Back to structures

OL955261.1__UIS25316.1__X__00116

Bact-Vir

OL955261.1__UIS25316.1__X__00116

Identity

Accession:
OL955261 ↗
Kingdom:
phage

Quality

95.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-59
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3dgpB00 3.30.70.1220 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › TFB5-like 0.76 60.0 5.86e-01 87.5% 82.5%
1a7jA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.76 67.0 4.25e-01 100.0% 26.9%
3dgpA00 3.30.70.2610 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.76 62.0 6.00e-01 89.3% 88.7%
2fwrA01 3.40.1170.30 Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › 0.72 55.0 5.49e-01 100.0% 82.5%
1kafA00 3.90.1150.20 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription regulator MotA, C-terminal domain 0.71 61.0 5.00e-01 100.0% 58.3%
1kutB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.70 52.0 4.42e-01 78.6% 73.0%
2pffB05 3.30.70.2430 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.70 56.0 5.47e-01 89.3% 98.4%
2gqrA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.68 50.0 4.12e-01 78.6% 72.0%
1zpwX00 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.68 54.0 4.82e-01 89.3% 65.9%
6k2eA01 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 53.0 5.05e-01 89.3% 77.9%
4a0fB02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.66 55.0 4.05e-01 100.0% 40.2%
1s7hA02 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 51.0 4.63e-01 89.3% 73.2%
1v72A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.65 54.0 4.62e-01 100.0% 63.4%
1lxjA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 51.0 4.28e-01 89.3% 61.2%
2eo5A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.65 53.0 4.10e-01 100.0% 47.3%
1xxaC00 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.65 54.0 5.02e-01 98.2% 93.2%
3kreA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.64 46.0 3.88e-01 78.6% 75.3%
1ydlA00 3.30.70.1220 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › TFB5-like 0.64 47.0 4.39e-01 80.4% 73.2%
2cw8A03 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.62 53.0 3.87e-01 100.0% 51.5%
2jmlA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.62 49.0 4.41e-01 89.3% 71.6%
3icjA03 3.10.310.70 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.61 49.0 4.16e-01 98.2% 51.0%
7chdE01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.61 44.0 3.23e-01 80.4% 64.5%
5i0hA02 1.20.5.4820 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.61 47.0 4.36e-01 85.7% 93.1%
1jg5A00 3.30.1410.10 Alpha Beta › 2-Layer Sandwich › Gtp Cyclohydrolase I Feedback Regulatory Protein; Chain: K › GTP cyclohydrolase I feedback regulatory protein GFRP 0.59 49.0 4.44e-01 100.0% 97.6%
4zj9A00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 43.0 3.68e-01 78.6% 96.8%
1qz9A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.59 48.0 3.76e-01 100.0% 48.3%
6jy1A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.58 47.0 3.77e-01 100.0% 49.6%
4o4bB00 3.30.470.160 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Inositol polyphosphate kinase 0.58 48.0 3.24e-01 100.0% 85.2%
1s12A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.57 46.0 4.09e-01 100.0% 84.0%
4r24B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.56 42.0 3.84e-01 87.5% 63.5%
6rpxA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 47.0 4.17e-01 98.2% 94.1%
4y4mC00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 44.0 2.99e-01 96.4% 70.2%
3rq1D01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.55 44.0 3.42e-01 100.0% 37.9%
4melA01 3.30.2230.10 Alpha Beta › 2-Layer Sandwich › DUSP-like › DUSP-like 0.55 42.0 3.40e-01 85.7% 64.9%
3ucsA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.55 40.0 3.54e-01 87.5% 55.6%
1ibaA00 3.30.1360.60 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Glucose permease domain IIB 0.54 41.0 3.77e-01 85.7% 75.6%
1pzwA00 3.40.1800.20 Alpha Beta › 3-Layer(aba) Sandwich › His-Me finger endonuclease fold › 0.54 43.0 3.88e-01 91.1% 68.8%
3igrA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 39.0 2.75e-01 80.4% 42.1%
2z0zA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 45.0 3.18e-01 100.0% 41.2%
7po9A01 3.40.1800.20 Alpha Beta › 3-Layer(aba) Sandwich › His-Me finger endonuclease fold › 0.53 43.0 3.74e-01 91.1% 60.5%
4lhfA00 6.10.200.10 Special › Helix non-globular › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › Regulatory phage protein Cox 0.52 37.0 3.46e-01 80.4% 73.4%
3vwdA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 37.0 2.64e-01 75.0% 48.0%
1z4hA01 1.10.238.160 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › 0.52 38.0 3.86e-01 85.7% 98.3%
1uw1A00 3.10.450.210 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 36.0 3.37e-01 80.4% 61.2%
2p6wA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.51 42.0 2.99e-01 100.0% 30.1%
2od0A00 3.30.1460.30 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › YgaC/TfoX-N like chaperone 0.50 40.0 3.50e-01 100.0% 65.0%
3shpA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 35.0 2.56e-01 71.4% 77.2%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3258420 4340.1.1.2 a+b complex topology › TFB5-related › TFB5-related › TFB5-related › Tfb2_C 0.78 62.0 6.26e-01 85.7% 96.4%
3182508 4340.1.1.0 a+b complex topology › TFB5-related › TFB5-related › TFB5-related 0.78 62.0 6.33e-01 87.5% 100.0%
3998708 5104.1.1.2 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › CDC45 0.76 66.0 4.87e-01 100.0% 53.3%
4773815 4340.1.1.2 a+b complex topology › TFB5-related › TFB5-related › TFB5-related › Tfb2_C 0.76 62.0 6.00e-01 89.3% 88.7%
5078264 2004.1.1.120 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ResIII 0.76 67.0 4.32e-01 100.0% 23.2%
2320836 4340.1.1.1 a+b complex topology › TFB5-related › TFB5-related › TFB5-related › Tfb5 0.75 59.0 5.63e-01 87.5% 78.8%
3781580 5104.1.1.2 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › CDC45 0.75 65.0 5.14e-01 100.0% 47.9%
3409500 3696.1.1.1 a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › HARP 0.74 65.0 6.06e-01 100.0% 82.9%
4526098 3696.1.1.1 a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › HARP 0.74 65.0 5.79e-01 100.0% 71.2%
4945605 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.73 59.0 5.63e-01 87.5% 87.7%
3533206 3696.1.1.1 a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › HARP 0.73 64.0 6.14e-01 100.0% 86.2%
3470093 3696.1.1.1 a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › HARP 0.72 62.0 5.97e-01 100.0% 87.7%
3621547 3696.1.1.0 a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related 0.72 63.0 6.01e-01 100.0% 86.2%
5033087 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.72 62.0 5.04e-01 100.0% 56.4%
4600736 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.71 62.0 5.10e-01 100.0% 56.2%
4426624 304.56.1.2 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.71 55.0 4.89e-01 87.5% 62.4%
4966680 3696.1.1.0 a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related 0.71 61.0 5.86e-01 100.0% 86.2%
4651803 304.56.1.2 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.70 54.0 4.69e-01 87.5% 57.0%
5071628 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.70 56.0 5.20e-01 87.5% 78.6%
5025261 304.57.1.0 a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like 0.69 53.0 4.74e-01 87.5% 63.5%
5059723 306.3.1.0 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like 0.69 59.0 5.66e-01 98.2% 89.2%
3839289 304.54.1.0 a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like 0.68 58.0 5.26e-01 100.0% 77.5%
4990495 306.6.1.0 a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like 0.67 57.0 5.47e-01 100.0% 92.3%
3385434 2484.1.1.261 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27038 0.66 50.0 3.70e-01 100.0% 32.9%
119083 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.66 55.0 4.79e-01 100.0% 68.8%
4344485 242.2.1.2 a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › tRNA_int_endo_N 0.65 55.0 4.86e-01 96.4% 64.7%
4982212 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.65 55.0 4.41e-01 100.0% 54.2%
5068029 4271.1.1.0 alpha complex topology › PriB N-terminal domain-like › PriB N-terminal domain-like › PriB N-terminal domain-like 0.65 56.0 3.93e-01 100.0% 29.5%
5062191 304.5.1.0 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.65 52.0 4.81e-01 89.3% 74.3%
3782670 314.1.1.6 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB 0.64 53.0 3.48e-01 100.0% 69.8%
5007506 304.5.1.0 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.64 48.0 4.39e-01 89.3% 60.0%
3781824 242.3.1.1 a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I › MutS_I 0.64 54.0 4.23e-01 100.0% 44.6%
4970860 377.3.1.0 few secondary structure elements › Glucocorticoid receptor-like › SAP30 zinc finger › SAP30 zinc finger 0.64 52.0 4.96e-01 91.1% 90.8%
5004815 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.64 48.0 4.70e-01 87.5% 83.1%
5076665 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.63 49.0 4.60e-01 87.5% 80.0%
3811947 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.63 53.0 4.43e-01 100.0% 62.9%
4937496 306.2.1.0 a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › C-terminal domain of arginine repressor 0.63 51.0 4.97e-01 100.0% 96.9%
4194607 3016.1.1.10 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › GDC-P 0.62 52.0 4.93e-01 100.0% 92.9%
3994712 3016.1.1.10 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › GDC-P 0.62 51.0 4.35e-01 98.2% 63.0%
4404464 242.3.1.1 a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I › MutS_I 0.61 52.0 4.28e-01 100.0% 50.9%
4108740 3016.1.1.10 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › GDC-P 0.61 50.0 4.28e-01 100.0% 61.0%
4263340 3016.1.1.10 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › GDC-P 0.61 51.0 4.57e-01 100.0% 77.6%
2697035 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.61 44.0 3.13e-01 78.6% 58.9%
3257399 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 53.0 5.09e-01 100.0% 90.8%
4076762 3016.1.1.1 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 0.61 49.0 4.29e-01 100.0% 62.0%
3631465 3016.1.1.2 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 0.60 49.0 4.65e-01 100.0% 94.5%
3704761 101.1.9.90 alpha arrays › HTH › HTH › Putative DNA-binding domain › NOL10_2nd 0.60 46.0 4.82e-01 89.3% 98.0%
5078462 1075.1.2.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX 0.60 49.0 3.19e-01 94.6% 21.6%
3983963 101.1.9.41 alpha arrays › HTH › HTH › Putative DNA-binding domain › ORF6N 0.60 48.0 4.03e-01 94.6% 81.9%
5006035 304.128.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB 0.60 44.0 4.19e-01 83.9% 71.4%
4507561 3012.1.1.9 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › SecD_1st 0.59 43.0 3.19e-01 78.6% 32.9%
4955639 3016.1.1.2 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 0.58 47.0 4.59e-01 100.0% 95.4%
5047814 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.57 46.0 3.94e-01 91.1% 60.0%
3180751 101.1.9.90 alpha arrays › HTH › HTH › Putative DNA-binding domain › NOL10_2nd 0.57 43.0 4.42e-01 89.3% 90.9%
4564454 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.57 43.0 3.65e-01 89.3% 54.3%
5002190 304.7.1.21 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › PF30773 0.56 46.0 4.35e-01 96.4% 87.1%
4127927 327.19.1.1 a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain › MutL_C 0.56 43.0 4.11e-01 89.3% 82.9%
5070666 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.54 41.0 4.12e-01 87.5% 100.0%
3174527 101.1.2.281 alpha arrays › HTH › HTH › winged helix domain › Tfb2 0.54 43.0 3.55e-01 96.4% 57.4%
3726379 896.1.1.2 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP14 0.51 44.0 3.64e-01 100.0% 67.6%
2671023 108.1.1.27 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6 0.50 42.0 4.01e-01 98.2% 86.6%