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OL960030.2__UJE34686.1__vBAbaPP1_68__00068

Bact-Vir

OL960030.2__UJE34686.1__vBAbaPP1_68__00068

Identity

Accession:
OL960030 ↗
Kingdom:
phage

Quality

87.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-60_127-162_181-213
PDB
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1e9fA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.71 60.0 5.16e-01 91.5% 96.0%
6hqvA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.70 53.0 4.85e-01 79.8% 100.0%
1khtB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.67 59.0 5.14e-01 94.6% 100.0%
3lv8A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.66 55.0 4.74e-01 89.9% 100.0%
3ld9A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.66 54.0 4.69e-01 85.3% 100.0%
3ug7C00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.65 49.0 3.66e-01 78.3% 100.0%
6n39A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.63 56.0 4.77e-01 95.3% 97.1%
2qg6A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 54.0 4.77e-01 95.3% 100.0%
4wsiB03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 51.0 4.37e-01 91.5% 93.1%
2xtmA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 50.0 4.28e-01 91.5% 93.2%
1zu4A02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 47.0 3.90e-01 83.7% 91.3%
2px0A02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 43.0 3.77e-01 79.1% 97.3%
5h7kA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 48.0 3.83e-01 89.9% 96.3%
5l3sB02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 44.0 3.72e-01 83.7% 90.0%
6wctD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 48.0 4.65e-01 95.3% 91.8%
1kgdA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 46.0 4.87e-01 93.0% 100.0%
1darA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 47.0 3.71e-01 91.5% 96.9%
2qgmA02 3.30.1870.10 Alpha Beta › 2-Layer Sandwich › EreA/ChaN-like, small alpha-beta sandwich › EreA-like; domain 2 0.53 24.0 3.07e-01 99.2% 72.2%
4ac9C01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 44.0 3.97e-01 91.5% 97.8%
3oesA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 43.0 4.08e-01 88.4% 100.0%
2hxsA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 47.0 4.20e-01 97.7% 98.3%
4b3xA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 44.0 4.05e-01 93.0% 100.0%
1z2aA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 44.0 4.10e-01 93.0% 100.0%
2yjnA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.51 41.0 3.40e-01 87.6% 99.6%
7bv3A01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.50 41.0 3.37e-01 91.5% 100.0%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4043560 2004.1.1.79 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Thymidylate_kin 0.74 59.0 5.06e-01 83.7% 100.0%
3703615 2004.1.1.202 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_28 0.73 68.0 5.55e-01 100.0% 90.9%
None 0.71 65.0 5.44e-01 98.4% 96.7%
3926318 2004.1.1.202 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_28 0.71 66.0 5.36e-01 100.0% 93.5%
3702353 2004.1.1.79 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Thymidylate_kin 0.71 61.0 5.06e-01 93.0% 100.0%
4105792 2004.1.1.79 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Thymidylate_kin 0.70 63.0 5.33e-01 97.7% 100.0%
3705437 2004.1.1.59 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE 0.69 62.0 4.87e-01 96.9% 96.9%
4313877 2004.1.1.79 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Thymidylate_kin 0.69 60.0 4.91e-01 93.8% 100.0%
None 0.68 60.0 5.02e-01 95.3% 99.5%
3220369 2004.1.1.94 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP_bind_1 0.66 57.0 4.52e-01 93.0% 100.0%
4938546 2004.1.1.64 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › APS_kinase 0.65 58.0 5.07e-01 96.9% 95.8%
3717394 2004.1.1.343 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_14 0.65 55.0 4.97e-01 91.5% 97.1%
4942854 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.64 59.0 5.05e-01 100.0% 99.5%
5078954 2004.1.1.16 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf 0.64 54.0 4.64e-01 91.5% 97.6%
4025098 2004.1.1.14 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU 0.64 55.0 4.45e-01 91.5% 85.5%
4154361 2004.1.1.14 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU 0.63 54.0 4.61e-01 91.5% 98.0%
3301261 2004.1.1.73 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.63 53.0 4.08e-01 91.5% 97.3%
3966465 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.62 54.0 4.57e-01 91.5% 100.0%
4668518 2004.1.1.59 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE 0.62 55.0 4.62e-01 97.7% 91.8%
5049275 2004.1.1.206 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_31 0.61 53.0 4.19e-01 93.0% 100.0%
None 0.61 50.0 3.85e-01 88.4% 95.9%
3614151 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.60 50.0 4.12e-01 92.2% 93.5%
3710218 2004.1.1.65 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › 6PF2K 0.59 52.0 4.49e-01 97.7% 94.3%
5019381 2004.1.1.67 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CbiA 0.59 53.0 4.23e-01 96.9% 99.6%
4999348 2004.1.1.16 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf 0.58 52.0 4.36e-01 97.7% 97.2%
4296626 2004.1.1.14 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU 0.57 49.0 3.70e-01 92.2% 93.4%
None 0.57 45.0 3.74e-01 83.7% 87.4%
3592486 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 47.0 4.05e-01 89.1% 98.5%
3996721 2004.1.1.16 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf 0.55 47.0 4.14e-01 92.2% 94.2%
3497098 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 47.0 3.97e-01 90.7% 94.8%
5082030 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 47.0 3.71e-01 92.2% 89.8%
3641480 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 47.0 3.36e-01 93.0% 85.1%
5066918 2004.1.1.97 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.54 46.0 4.17e-01 91.5% 95.4%
5053786 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 46.0 4.07e-01 91.5% 96.7%
4020230 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 40.0 4.28e-01 76.7% 100.0%
3619950 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 46.0 3.42e-01 92.2% 81.8%
5077896 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.52 46.0 4.20e-01 98.4% 98.3%
5052576 2004.1.1.16 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf 0.51 44.0 3.94e-01 95.3% 97.3%
D2 medium residues 61-126_163-180
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3nbxX03 1.20.58.1510 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 49.0 4.64e-01 76.2% 78.2%
2d9dA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.64 48.0 4.73e-01 78.6% 78.7%
3lbxB01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 46.0 4.28e-01 78.6% 83.2%
5nl6A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 45.0 4.22e-01 78.6% 80.6%
3eslA01 1.20.58.2070 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 44.0 4.68e-01 88.1% 88.0%
2bnlC00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.60 43.0 3.71e-01 76.2% 91.0%
3anwA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 46.0 4.23e-01 90.5% 85.0%
2f76X00 1.10.150.490 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Retroviral GAG p10 protein 0.55 41.0 3.85e-01 77.4% 89.0%
2jx4A01 6.10.140.460 Special › Helix non-globular › Helix Hairpins › 0.51 30.0 3.56e-01 72.6% 100.0%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3866248 4163.1.1.5 alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Use1 0.66 48.0 5.15e-01 78.6% 92.9%
4537668 1134.1.1.8 alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain › Use1 0.65 47.0 4.98e-01 78.6% 86.7%
3597463 650.1.1.0 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.57 42.0 4.30e-01 78.6% 82.5%
3511170 1134.1.1.0 alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain 0.56 39.0 4.05e-01 77.4% 80.0%
3753345 609.1.1.0 alpha bundles › Domain of poly(ADP-ribose) polymerase › Domain of poly(ADP-ribose) polymerase › Domain of poly(ADP-ribose) polymerase 0.55 38.0 3.42e-01 72.6% 65.0%
3713532 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.55 37.0 3.83e-01 77.4% 73.8%
3783883 650.1.1.11 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › RPT 0.54 40.0 4.09e-01 84.5% 83.7%
3199268 4970.1.1.0 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.53 40.0 4.26e-01 86.9% 90.7%
3472756 2002.1.1.56 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Dus 0.50 44.0 3.08e-01 100.0% 61.4%