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OL960030.2__UJE34739.1__vBAbaPP1_121__00121

Bact-Vir

OL960030.2__UJE34739.1__vBAbaPP1_121__00121

Identity

Accession:
OL960030 ↗
Kingdom:
phage

Quality

69.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-92
PDB
Domain cluster: representative
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4fqnC00 1.20.1160.20 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › 0.76 57.0 5.60e-01 100.0% 74.1%
2p11A02 1.10.286.50 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › 0.71 56.0 5.74e-01 100.0% 90.5%
7nmqA01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.66 56.0 3.67e-01 100.0% 21.4%
2mx8A01 1.10.274.70 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain 0.66 57.0 5.13e-01 100.0% 78.8%
3ddhA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.65 55.0 5.45e-01 100.0% 90.1%
1q5nA03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.65 50.0 4.96e-01 100.0% 81.5%
3s6jE02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.64 46.0 4.81e-01 97.4% 85.5%
2w02B01 1.10.150.640 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle 0.62 42.0 4.30e-01 100.0% 74.3%
3q1xA01 1.10.3130.10 Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › serine acetyltransferase, domain 1 0.61 54.0 4.47e-01 98.7% 71.2%
2qytA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.59 43.0 3.97e-01 76.9% 65.3%
3b8mC01 3.30.1890.10 Alpha Beta › 2-Layer Sandwich › Bacterial polysaccharide co-polymerase-like › FepE-like 0.59 51.0 4.18e-01 100.0% 55.6%
3gw6D02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 46.0 3.63e-01 84.6% 68.9%
7wu8B01 1.20.1160.20 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › 0.58 42.0 4.20e-01 94.9% 77.2%
4akgA08 1.10.472.130 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Dynein motor, AAA2 domain, small subdomain 0.57 49.0 4.01e-01 100.0% 59.0%
2hszA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.57 45.0 4.57e-01 97.4% 89.3%
3zxxA00 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.57 40.0 2.84e-01 79.5% 21.9%
3tf8B00 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.57 51.0 3.89e-01 100.0% 80.4%
3x3bA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.57 48.0 3.45e-01 100.0% 52.8%
2gytA01 1.10.287.2070 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.57 41.0 4.25e-01 98.7% 83.1%
2if1A00 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.57 38.0 3.30e-01 97.4% 42.9%
3aq1B02 3.30.260.10 Alpha Beta › 2-Layer Sandwich › GROEL; domain 2 › TCP-1-like chaperonin intermediate domain 0.57 48.0 4.35e-01 96.2% 83.6%
2hjmA01 1.20.120.460 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › protein pf1176 like 0.57 47.0 4.64e-01 97.4% 86.0%
3g2bA00 1.10.10.1150 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) 0.56 35.0 3.39e-01 96.2% 53.3%
5i47B02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.55 33.0 3.50e-01 98.7% 67.2%
4mlmA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.54 46.0 3.59e-01 100.0% 77.7%
1v4aA03 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.54 42.0 3.43e-01 85.9% 59.5%
1a41A02 1.20.120.380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 0.52 39.0 3.68e-01 79.5% 69.1%
2ckzA01 6.10.140.870 Special › Helix non-globular › Helix Hairpins › 0.52 28.0 3.49e-01 97.4% 87.5%
1abvA00 1.10.520.20 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase 0.51 43.0 3.99e-01 100.0% 77.1%
4up8A02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.51 44.0 2.79e-01 100.0% 27.4%
7p2yd01 1.10.520.20 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase 0.51 44.0 4.13e-01 100.0% 81.8%
4xaxB02 1.20.58.1290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › CarD-like, C-terminal domain 0.51 36.0 3.36e-01 74.4% 98.0%
1u8bA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.50 32.0 3.49e-01 78.2% 82.0%
4mouC02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.50 35.0 3.83e-01 97.4% 100.0%
1dysA00 3.20.20.40 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 1, 4-beta cellobiohydrolase 0.50 42.0 2.80e-01 96.2% 93.6%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3800478 304.28.1.9 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › Patched 0.74 59.0 3.35e-01 85.9% 11.7%
5049715 592.2.1.0 alpha arrays › PWI domain-like › YugE-like › YugE-like 0.65 58.0 4.97e-01 100.0% 88.8%
3689958 3589.1.1.1 a+b complex topology › RNAi polymerase N-terminal domain › RNAi polymerase N-terminal domain › RNAi polymerase N-terminal domain › RdRP 0.64 49.0 3.43e-01 84.6% 25.1%
5034157 1015.1.1.2 alpha complex topology › Insulin-induced gene (Insig) homologs › Insulin-induced gene (Insig) homologs › Insulin-induced gene (Insig) homologs › Caroten_synth 0.63 48.0 3.65e-01 84.6% 81.0%
4945646 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.63 54.0 4.87e-01 100.0% 73.9%
3714910 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.62 52.0 3.33e-01 100.0% 18.1%
3708807 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.62 52.0 4.22e-01 100.0% 47.7%
3262460 101.1.2.661 alpha arrays › HTH › HTH › winged helix domain › HTH_9, POLR3C_WHD 0.61 56.0 3.59e-01 100.0% 75.1%
5061183 3355.1.1.14 alpha complex topology › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › Lactate_perm 0.61 48.0 3.06e-01 88.5% 32.6%
3788920 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.59 39.0 3.73e-01 100.0% 57.8%
3313262 633.4.1.1 alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.59 50.0 4.63e-01 100.0% 85.7%
5013440 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 38.0 3.23e-01 91.0% 37.1%
3700555 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.58 40.0 3.81e-01 71.8% 61.1%
3786267 102.1.1.149 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DUF7078 0.58 50.0 4.82e-01 100.0% 98.9%
4010964 192.29.1.102 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Fung_rhodopsin 0.58 45.0 3.96e-01 87.2% 74.4%
3613353 3345.1.1.0 alpha arrays › MRG domain › MRG domain › MRG domain 0.58 49.0 3.76e-01 100.0% 86.8%
3701188 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.58 45.0 4.17e-01 87.2% 67.6%
3621979 3198.1.1.1 alpha bundles › ABA-1 repeat unit › ABA-1 repeat unit › ABA-1 repeat unit › NPA 0.57 47.0 4.15e-01 100.0% 60.0%
3512291 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.55 40.0 2.63e-01 75.6% 24.3%
3602236 284.1.3.3 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › DUF4346 0.55 37.0 3.55e-01 98.7% 57.9%
5027304 3926.1.1.1 alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.55 47.0 3.74e-01 100.0% 45.7%
3973500 601.1.2.144 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › HBM 0.55 47.0 4.21e-01 100.0% 91.3%
3606337 7579.1.1.44 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_6 0.55 43.0 2.84e-01 84.6% 86.1%
4961983 3755.1.1.32 alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related › ATP-synt_D 0.54 46.0 3.39e-01 100.0% 36.5%
3404575 101.1.15.1 alpha arrays › HTH › HTH › HAT1, C-terminal domain › MOZ_SAS 0.53 37.0 3.58e-01 79.5% 63.3%
4995204 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.53 38.0 4.02e-01 76.9% 84.3%
3203331 5050.1.1.32 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Acatn 0.53 44.0 3.24e-01 93.6% 38.6%
1736235 101.1.1.51 alpha arrays › HTH › HTH › Three-helical HTH › Slx4 0.53 35.0 3.68e-01 84.6% 76.8%
2986816 563.1.1.0 alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase 0.53 44.0 3.57e-01 100.0% 46.8%
4984373 3926.1.1.1 alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.52 44.0 3.39e-01 100.0% 39.5%
4659623 101.1.2.236 alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD 0.52 47.0 4.14e-01 100.0% 83.5%
5015087 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.52 44.0 3.22e-01 100.0% 72.2%
3209189 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 43.0 3.51e-01 91.0% 51.1%
5060556 3016.1.1.5 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › SHMT 0.51 42.0 3.37e-01 93.6% 65.9%
3741612 101.1.2.90 alpha arrays › HTH › HTH › winged helix domain › HTH_9 0.51 45.0 4.32e-01 94.9% 96.7%
4001659 101.1.2.236 alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD 0.51 47.0 3.57e-01 100.0% 94.9%
4113442 101.26.1.2 alpha arrays › HTH › Tex N-terminal domain › Tex N-terminal domain › HTH_44 0.51 43.0 3.58e-01 97.4% 54.5%
5050213 192.2.1.87 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › ATP-synt_D 0.50 42.0 3.33e-01 100.0% 44.7%
1147772 101.1.2.90 alpha arrays › HTH › HTH › winged helix domain › HTH_9 0.50 45.0 4.45e-01 96.2% 100.0%
5056727 3926.1.1.1 alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.50 42.0 3.24e-01 100.0% 41.0%
D2 high residues 113-212
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4gkfA00 1.10.520.30 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain 0.59 44.0 3.87e-01 79.0% 68.5%
4unfA02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.58 42.0 3.99e-01 99.0% 64.1%
2zopA00 1.10.520.30 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain 0.58 39.0 3.81e-01 85.0% 61.6%
4g84A01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.58 45.0 3.09e-01 82.0% 33.6%
1i36A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.57 33.0 3.36e-01 96.0% 56.6%
4zvaA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.56 45.0 3.93e-01 85.0% 59.1%
1n81A00 1.10.3030.10 Mainly Alpha › Orthogonal Bundle › Gametocyte protein Pfg27 › Gametocyte protein Pfg27 0.56 50.0 4.12e-01 100.0% 69.4%
3fbzA01 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 43.0 4.28e-01 84.0% 90.2%
2wsiA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.54 42.0 3.11e-01 85.0% 85.3%
1rjgA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 45.0 3.32e-01 97.0% 35.7%
1eb6A00 3.40.390.10 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) 0.52 41.0 3.49e-01 87.0% 85.3%
5b00A00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.52 44.0 3.30e-01 96.0% 73.9%
5m0nA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.51 46.0 3.02e-01 99.0% 48.9%
2uuqA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.51 45.0 3.06e-01 100.0% 71.6%
3rlfF04 1.10.3720.10 Mainly Alpha › Orthogonal Bundle › MetI-like fold › MetI-like 0.51 38.0 2.93e-01 78.0% 54.7%
2rldA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.51 38.0 3.69e-01 80.0% 88.6%
6e1kA01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.51 38.0 3.75e-01 81.0% 72.3%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.50 31.0 3.59e-01 87.0% 92.5%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4961708 1075.3.1.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 0.61 43.0 3.20e-01 74.0% 97.1%
4263423 194.1.1.1 alpha complex topology › Serum albumin-like › Serum albumin-like › Serum albumin-like › Serum_albumin 0.61 38.0 3.09e-01 100.0% 33.2%
4269992 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.59 39.0 4.33e-01 80.0% 88.0%
4936739 3921.1.1.1 alpha complex topology › Na(+)-translocating NADH-quinone reductase subunit D › Na(+)-translocating NADH-quinone reductase subunit D › Na(+)-translocating NADH-quinone reductase subunit D › Rnf-Nqr 0.56 43.0 3.49e-01 84.0% 62.1%
2462244 1075.5.1.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE 0.53 39.0 3.13e-01 79.0% 82.6%
4995497 1075.5.1.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE 0.52 39.0 3.05e-01 79.0% 81.8%
3976610 162.1.1.1 alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD 0.51 46.0 4.61e-01 100.0% 97.0%
4345287 4006.1.1.1 alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.51 26.0 2.67e-01 87.0% 47.0%
3183807 601.14.1.1 alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin › Hemerythrin 0.50 40.0 3.07e-01 87.0% 85.3%
4030639 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.50 37.0 3.56e-01 78.0% 87.0%
3592211 633.21.1.0 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.50 37.0 3.61e-01 78.0% 95.5%