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OL960573.1__UIU26781.1__SA126VB_65__00065

Bact-Vir

OL960573.1__UIU26781.1__SA126VB_65__00065

Identity

Accession:
OL960573 ↗
Kingdom:
phage

Quality

81.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Seuratvirus› Escherichia_phage_vB_EcoS_SA126VB

TaxID: 2909743

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 7-59
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1jeyB03 1.10.1600.10 Mainly Alpha › Orthogonal Bundle › Ku70; Chain: A; domain 4 › 0.61 33.0 2.67e-01 77.4% 25.5%
3hkoA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.56 45.0 3.09e-01 94.3% 95.1%
5vn6A00 3.60.130.10 Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like 0.55 41.0 2.73e-01 86.8% 33.0%
1zq1A02 3.40.50.1170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › L-asparaginase, N-terminal domain 0.53 41.0 2.85e-01 92.5% 48.6%
1vw4Z00 4.10.410.60 Few Secondary Structures › Irregular › Factor Xa Inhibitor › 0.51 40.0 3.86e-01 92.5% 75.8%
7r0kA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.51 36.0 2.65e-01 77.4% 56.0%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3965202 378.1.1.19 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_3 0.90 80.0 6.11e-01 94.3% 45.5%
3413123 3343.1.1.1 ↗ alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal 0.57 49.0 2.81e-01 100.0% 20.3%
3651174 221.1.1.172 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_UBP8 0.56 42.0 4.20e-01 84.9% 83.6%
3936851 3949.1.1.0 ↗ alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain 0.56 42.0 2.66e-01 84.9% 50.2%
3228624 387.1.1.0 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related 0.53 36.0 3.30e-01 77.4% 51.3%
3721311 109.21.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nup96 0.51 39.0 2.33e-01 98.1% 60.0%
5031046 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.51 37.0 3.14e-01 83.0% 59.2%
3176599 261.1.1.1 ↗ a+b complex topology › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › HECT 0.51 43.0 2.61e-01 100.0% 62.7%
4625711 570.1.1.1 ↗ alpha arrays › Pre-protein crosslinking domain of SecA › Pre-protein crosslinking domain of SecA › Pre-protein crosslinking domain of SecA › SecA_PP_bind 0.50 43.0 3.34e-01 100.0% 83.2%
D2 medium residues 60-115
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ijaA03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.63 52.0 3.92e-01 96.4% 66.7%
4ou7A00 1.10.8.1180 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.62 43.0 4.02e-01 98.2% 57.7%
1pjqA02 3.30.160.110 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain 0.62 31.0 3.76e-01 96.4% 72.2%
1u3eM01 3.90.75.20 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › 0.60 48.0 3.90e-01 87.5% 46.2%
3w6kC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 41.0 3.57e-01 91.1% 50.6%
3ga8A00 3.10.20.860 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 41.0 3.91e-01 92.9% 71.6%
1d5aA02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 39.0 2.80e-01 87.5% 77.4%
3uifA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.53 45.0 3.04e-01 100.0% 48.9%
4exbB00 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.52 43.0 2.87e-01 96.4% 54.1%
4i62A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.52 41.0 3.22e-01 94.6% 88.2%
4dnhA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 39.0 2.44e-01 87.5% 73.6%
2fuqA01 1.50.10.100 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase 0.51 44.0 2.75e-01 100.0% 41.2%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3965202 378.1.1.19 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_3 0.74 54.0 4.25e-01 85.7% 39.1%
3419380 4.1.1.25 ↗ beta barrels › SH3 › SH3 › SH3 › PAZ 0.67 43.0 4.05e-01 92.9% 52.9%
5010074 4.10.1.0 ↗ beta barrels › SH3 › Fumarylacetoacetate hydrolase, FAH, N-terminal domain › Fumarylacetoacetate hydrolase, FAH, N-terminal domain 0.67 45.0 4.15e-01 100.0% 53.3%
3622893 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.60 46.0 2.84e-01 83.9% 27.1%
3952733 5.1.8.10 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 › Peptidase_S9_N 0.60 41.0 2.71e-01 71.4% 22.2%
4424957 3804.1.1.0 ↗ alpha bundles › CRISPR-Cas system RNase C2c2 N-terminal domain › CRISPR-Cas system RNase C2c2 N-terminal domain › CRISPR-Cas system RNase C2c2 N-terminal domain 0.59 46.0 3.36e-01 91.1% 67.8%
3970650 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.57 49.0 3.26e-01 100.0% 48.6%
4915624 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.55 37.0 3.45e-01 92.9% 53.9%
3997997 109.1.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C 0.53 41.0 3.02e-01 89.3% 86.9%
1117568 2003.1.2.9 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GDI 0.53 41.0 2.57e-01 87.5% 73.6%
4953737 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.52 41.0 2.93e-01 100.0% 29.3%
3169604 2004.1.1.495 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TRAPPC10_1st 0.51 44.0 3.01e-01 100.0% 78.3%
3431805 5081.1.1.4 ↗ alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › DUF1751 0.51 41.0 3.05e-01 100.0% 96.1%
3460694 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.50 39.0 3.58e-01 100.0% 63.3%
3194261 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.50 41.0 3.41e-01 100.0% 91.3%