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OL963731.1__USM11567.1__vBCbaSRXM_122__00122

Bact-Vir

OL963731.1__USM11567.1__vBCbaSRXM_122__00122

Identity

Accession:
OL963731 ↗
Kingdom:
phage

Quality

84.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-89
PDB
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF10544.16 best T5orf172 30.6 5.40e-07 93.1% 83.7%
PF13455.13 MUG113 38.0 2.70e-09 75.9% 83.6%
D2 high residues 100-156
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF13384.13 best HTH_23 26.1 8.20e-06 75.4% 62.0%
PF04545.23 Sigma70_r4 28.1 1.60e-06 56.1% 58.0%
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6uglB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.85 63.0 6.25e-01 77.2% 82.8%
6v7xB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 62.0 6.30e-01 78.9% 87.5%
3ulqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 62.0 6.17e-01 78.9% 82.8%
4gvpA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.82 61.0 4.04e-01 78.9% 23.8%
6cc0A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 61.0 5.67e-01 78.9% 70.0%
3p7nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 60.0 5.54e-01 78.9% 66.7%
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 59.0 5.25e-01 78.9% 60.0%
2jn6A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.78 52.0 4.56e-01 70.2% 50.6%
5y9sC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 57.0 5.04e-01 78.9% 65.9%
3fxqB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 57.0 4.86e-01 78.9% 63.3%
2m8gX00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.74 52.0 4.89e-01 75.4% 60.0%
5fo5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 54.0 4.65e-01 78.9% 61.4%
1lvaA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 53.0 5.19e-01 78.9% 88.7%
1wi9A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 53.0 5.28e-01 77.2% 96.6%
4ijaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 53.0 5.16e-01 78.9% 88.9%
1biaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 55.0 5.34e-01 84.2% 89.1%
1c0wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 52.0 4.84e-01 78.9% 78.1%
1p4wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 60.0 5.16e-01 91.2% 70.1%
4b43A01 1.10.10.2480 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.71 48.0 4.52e-01 70.2% 58.8%
2isyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 52.0 3.93e-01 78.9% 41.3%
3dv8A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 52.0 4.72e-01 78.9% 73.1%
6jqsA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 61.0 5.76e-01 91.2% 89.6%
3tgnB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 55.0 5.37e-01 87.7% 81.0%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 51.0 3.92e-01 78.9% 41.1%
4nb5B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 50.0 4.42e-01 80.7% 63.5%
3mklA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 55.0 4.56e-01 96.5% 71.2%
3i71B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 43.0 4.33e-01 70.2% 72.4%
1s6lA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 48.0 5.04e-01 82.5% 98.1%
1eyvB00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.61 44.0 3.31e-01 75.4% 82.0%
3py8A04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.60 48.0 3.67e-01 91.2% 75.7%
5trdA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 50.0 4.41e-01 94.7% 98.8%
2f4lA03 3.10.28.20 Alpha Beta › Roll › Endonuclease I-creI › Acetamidase/Formamidase-like domains 0.58 40.0 3.61e-01 71.9% 77.5%
4pg4A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.56 42.0 3.22e-01 89.5% 80.7%
1konA01 1.10.10.200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Integrase, N-terminal zinc-binding domain 0.55 38.0 3.64e-01 78.9% 61.8%
2uyyA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.55 43.0 3.47e-01 91.2% 66.7%
1xb2B01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.54 38.0 3.82e-01 78.9% 71.7%
3r2cA00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.53 45.0 3.48e-01 98.2% 92.0%
1vquA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.53 41.0 3.92e-01 86.0% 77.6%
4hehA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.52 43.0 3.96e-01 100.0% 68.7%
1tzvA00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.52 40.0 3.12e-01 87.7% 41.1%
4bfmA00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.50 42.0 2.62e-01 91.2% 97.1%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4963466 101.1.1.368 alpha arrays › HTH › HTH › Three-helical HTH › HTH_58 0.93 65.0 7.26e-01 75.4% 91.1%
3890615 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.92 61.0 6.52e-01 73.7% 78.0%
5058447 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.88 62.0 6.33e-01 75.4% 76.4%
2753461 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.86 63.0 5.64e-01 77.2% 64.5%
3941764 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.84 62.0 5.91e-01 77.2% 75.4%
4578719 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.83 62.0 6.02e-01 78.9% 76.2%
3977009 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.83 62.0 5.73e-01 78.9% 74.3%
4295835 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.82 57.0 6.24e-01 80.7% 91.1%
3962552 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.82 61.0 5.52e-01 78.9% 65.3%
5050961 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.82 55.0 6.37e-01 77.2% 100.0%
5070991 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.82 57.0 5.33e-01 73.7% 95.7%
4993585 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.82 64.0 6.27e-01 82.5% 80.0%
4610234 101.1.2.89 alpha arrays › HTH › HTH › winged helix domain › HTH_DeoR 0.81 63.0 6.21e-01 82.5% 83.3%
4318089 101.1.2.92 alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.81 63.0 6.20e-01 82.5% 83.3%
3949663 101.1.1.307 alpha arrays › HTH › HTH › Three-helical HTH › DUF3071 0.81 55.0 6.32e-01 75.4% 100.0%
3603081 101.1.2.40 alpha arrays › HTH › HTH › winged helix domain › CPSase_L_D3 0.81 60.0 5.46e-01 78.9% 84.0%
3964284 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 58.0 5.73e-01 75.4% 71.7%
3968886 101.1.1.77 alpha arrays › HTH › HTH › Three-helical HTH › HTH_50 0.81 55.0 5.25e-01 70.2% 63.1%
5045632 101.1.2.881 alpha arrays › HTH › HTH › winged helix domain › UPF0175 0.81 56.0 5.93e-01 71.9% 86.0%
5052578 101.1.1.371 alpha arrays › HTH › HTH › Three-helical HTH › UPF0175 0.81 54.0 6.21e-01 71.9% 100.0%
3324592 101.1.1.196 alpha arrays › HTH › HTH › Three-helical HTH › RWP-RK 0.80 54.0 6.21e-01 80.7% 100.0%
1769338 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.80 62.0 5.76e-01 82.5% 71.4%
3971154 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.79 64.0 5.89e-01 84.2% 72.9%
5062514 101.1.1.371 alpha arrays › HTH › HTH › Three-helical HTH › UPF0175 0.79 54.0 5.97e-01 73.7% 91.1%
5053441 101.1.1.371 alpha arrays › HTH › HTH › Three-helical HTH › UPF0175 0.78 56.0 5.51e-01 82.5% 71.7%
3287759 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.78 58.0 5.58e-01 78.9% 73.8%
3985435 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 52.0 5.84e-01 71.9% 100.0%
3645591 101.1.1.362 alpha arrays › HTH › HTH › Three-helical HTH › RF-1 0.77 58.0 4.95e-01 80.7% 55.6%
3436375 101.1.2.459 alpha arrays › HTH › HTH › winged helix domain › RWP-RK 0.77 55.0 5.99e-01 82.5% 95.6%
3619451 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 66.0 6.32e-01 94.7% 90.8%
3991300 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 67.0 5.99e-01 100.0% 75.0%
4971829 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.72 54.0 5.04e-01 80.7% 71.4%
3808581 101.1.4.86 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › RWP-RK 0.72 57.0 5.46e-01 89.5% 76.9%
4630551 589.1.2.1 alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › TF C-terminus (Pfam 05698) › Trigger_C 0.71 54.0 3.69e-01 82.5% 23.9%
4039434 589.1.2.1 alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › TF C-terminus (Pfam 05698) › Trigger_C 0.71 54.0 3.58e-01 82.5% 21.8%
3931341 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 54.0 4.61e-01 87.7% 52.2%
4062311 589.1.2.1 alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › TF C-terminus (Pfam 05698) › Trigger_C 0.69 51.0 3.49e-01 77.2% 24.9%
3949796 589.1.2.0 alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › TF C-terminus (Pfam 05698) 0.68 51.0 3.19e-01 82.5% 15.3%
3259994 4964.1.1.1 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A 0.68 52.0 4.04e-01 84.2% 59.2%
4169333 4964.1.1.1 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A 0.67 54.0 4.23e-01 89.5% 84.0%
3463281 101.1.1.196 alpha arrays › HTH › HTH › Three-helical HTH › RWP-RK 0.67 57.0 5.52e-01 96.5% 84.6%
4484832 589.1.2.1 alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › TF C-terminus (Pfam 05698) › Trigger_C 0.67 51.0 3.71e-01 82.5% 30.6%
4443980 589.1.2.1 alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › TF C-terminus (Pfam 05698) › Trigger_C 0.66 50.0 3.49e-01 82.5% 24.1%
4575680 589.1.2.1 alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › TF C-terminus (Pfam 05698) › Trigger_C 0.65 49.0 3.44e-01 82.5% 27.6%
4170915 589.1.2.1 alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › TF C-terminus (Pfam 05698) › Trigger_C 0.65 49.0 3.49e-01 82.5% 26.9%
4602976 298.1.1.2 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Homoserine_dh 0.64 49.0 3.47e-01 84.2% 46.1%
3629297 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 50.0 4.21e-01 89.5% 63.0%
3963328 2006.1.1.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.60 45.0 2.99e-01 80.7% 25.8%
2970332 4964.1.1.0 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.59 47.0 3.60e-01 89.5% 75.5%
4480608 589.1.2.1 alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › TF C-terminus (Pfam 05698) › Trigger_C 0.59 51.0 3.56e-01 96.5% 57.8%
4848450 304.48.1.6 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_A 0.58 46.0 3.53e-01 89.5% 75.5%
4110549 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.57 39.0 3.21e-01 96.5% 38.2%
3278074 7579.1.1.44 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_6 0.54 43.0 2.83e-01 91.2% 63.6%