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OL964735.1__UJD20032.1__T73t3_83__00083

Bact-Vir

OL964735.1__UJD20032.1__T73t3_83__00083

Identity

Accession:
OL964735 ↗
Kingdom:
phage

Quality

68.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Tequatrovirus› Escherichia_phage_T4

TaxID: 2681598

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 12-68
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26871.1 best Phage_T4_Y04L 51.0 2.00e-13 66.7% 37.4%
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ffvB04 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.63 43.0 2.96e-01 71.9% 25.8%
7uvpA02 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.59 34.0 3.22e-01 78.9% 46.4%
7a0hA01 3.30.1140.60 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › F-actin capping protein, alpha subunit 0.58 42.0 3.44e-01 77.2% 44.6%
1f02T00 4.10.820.10 Few Secondary Structures › Irregular › Translocated Intimin Receptor; Chain T › Translocated intimin receptor, central domain 0.56 47.0 4.53e-01 94.7% 97.0%
1d0xA04 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.55 41.0 3.25e-01 84.2% 89.8%
8be0A01 3.40.91.90 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain 0.55 48.0 3.31e-01 96.5% 98.4%
3egyX00 3.30.572.10 Alpha Beta › 2-Layer Sandwich › Thymidylate Synthase; Chain A › Thymidylate synthase/dCMP hydroxymethylase domain 0.55 43.0 2.94e-01 89.5% 73.5%
1jphA00 3.20.20.210 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 0.55 40.0 2.44e-01 77.2% 45.7%
1t6aA02 3.30.310.120 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein 0.52 41.0 3.64e-01 84.2% 73.1%
2dlbA00 3.10.20.330 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Protein of unknown function YopT 0.52 41.0 3.95e-01 96.5% 75.7%
2ej9A01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.52 44.0 3.11e-01 98.2% 30.9%
2uvaG11 6.10.60.10 Special › Helix non-globular › Hydrophobic Seed Protein › 0.50 34.0 3.44e-01 80.7% 74.5%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3454324 2004.1.1.51 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sulfotransfer_1 0.68 52.0 3.65e-01 84.2% 60.0%
4838547 834.1.1.1 ↗ a+b two layers › Photosystem I subunit PsaD › Photosystem I subunit PsaD › Photosystem I subunit PsaD › PsaD 0.62 33.0 2.86e-01 84.2% 31.5%
3719555 109.4.1.761 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Telomere_reg-2 0.60 43.0 2.47e-01 77.2% 8.7%
2754401 3343.1.1.2 ↗ alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal,GCP_N_terminal 0.58 50.0 2.86e-01 98.2% 27.7%
3640451 109.16.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › TROVE domain-like › TROVE domain-like › DUF2828 0.58 45.0 2.75e-01 84.2% 58.4%
2682 101.1.2.120 ↗ alpha arrays › HTH › HTH › winged helix domain › DDRGK 0.57 33.0 3.09e-01 84.2% 44.4%
3193327 314.1.1.12 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat 0.57 49.0 3.08e-01 96.5% 22.9%
3519143 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.57 46.0 2.86e-01 87.7% 73.1%
3222762 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.56 41.0 3.75e-01 80.7% 77.5%
4965179 5040.1.1.0 ↗ extended segments › Cytochrome c oxidase subunit II-like, transmembrane region › Cytochrome c oxidase subunit II-like, transmembrane region › Cytochrome c oxidase subunit II-like, transmembrane region 0.56 47.0 4.24e-01 89.5% 100.0%
3283003 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.56 44.0 3.69e-01 86.0% 68.4%
5083960 1075.1.2.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX 0.56 49.0 3.45e-01 100.0% 85.3%
3739430 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 37.0 3.17e-01 75.4% 43.3%
3806413 4133.1.1.0 ↗ alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like 0.56 43.0 3.15e-01 84.2% 61.9%
4011414 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.56 44.0 2.96e-01 86.0% 28.8%
3169604 2004.1.1.495 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TRAPPC10_1st 0.55 43.0 2.88e-01 84.2% 30.9%
3616474 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.55 43.0 3.31e-01 84.2% 41.6%
5083115 1075.1.2.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain 0.55 43.0 3.10e-01 91.2% 34.1%
3648918 7566.1.1.1 ↗ a/b three-layered sandwiches › HflX family GTPase N-terminal domain › HflX family GTPase N-terminal domain › HflX family GTPase N-terminal domain › GTP-bdg_N,GTP-bdg_M 0.54 43.0 2.88e-01 87.7% 35.3%
3370099 212.1.1.10 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › RNase_PH 0.54 42.0 3.37e-01 87.7% 43.2%
3743565 109.4.1.313 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › UTP20_N 0.54 40.0 2.47e-01 78.9% 23.7%
4352871 601.7.1.40 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › Cas13a_C 0.54 47.0 2.69e-01 98.2% 27.1%
3788625 5001.1.1.120 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › TRP 0.54 44.0 2.70e-01 93.0% 24.5%
3529614 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 43.0 3.95e-01 89.5% 100.0%
5059557 2004.1.1.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.53 40.0 2.62e-01 82.5% 68.0%
1588516 323.1.1.0 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.53 39.0 2.84e-01 80.7% 80.6%
4140359 190.1.1.7 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › MATalpha_HMGbox 0.52 40.0 3.07e-01 87.7% 55.3%
4933113 101.1.9.150 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Cas12f1-like_TNB 0.51 32.0 2.53e-01 73.7% 32.7%
4545587 5.1.3.154 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF30361 0.51 42.0 2.53e-01 96.5% 13.7%
4670452 2007.6.1.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS 0.51 38.0 2.55e-01 78.9% 27.8%
4940743 2008.1.1.114 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF4143 0.51 40.0 3.27e-01 84.2% 49.0%