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OL964745.1__UJD20307.1__T47t1_94__00094

Bact-Vir

OL964745.1__UJD20307.1__T47t1_94__00094

Identity

Accession:
OL964745 ↗
Kingdom:
phage

Quality

65.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-70
PDB
D2 high residues 105-219
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23882.2 best DUF7235 33.5 4.00e-08 93.0% 23.9%
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4noiA01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.82 52.0 5.53e-01 72.2% 71.8%
6gmhK00 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.78 47.0 4.71e-01 72.2% 59.1%
1bdfA01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.78 52.0 5.42e-01 73.0% 73.6%
5xogK00 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.77 46.0 4.67e-01 72.2% 60.2%
1dfaA03 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.74 46.0 5.05e-01 96.5% 75.8%
3eeeA00 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.68 51.0 4.30e-01 97.4% 47.3%
2gjvA00 3.30.2000.10 Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like 0.68 62.0 5.89e-01 100.0% 94.9%
5hl8C00 3.30.1360.100 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM 0.67 43.0 5.10e-01 100.0% 94.9%
2rjzA02 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.65 50.0 5.31e-01 100.0% 94.9%
1bqsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 43.0 4.28e-01 76.5% 66.4%
3tf8B00 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.63 47.0 4.03e-01 100.0% 48.9%
3rd6A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.63 45.0 4.17e-01 73.9% 89.6%
1gyvA00 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.62 44.0 4.38e-01 98.3% 70.0%
2ab5B01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.62 42.0 4.07e-01 87.8% 61.7%
2ek0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.62 41.0 4.56e-01 76.5% 86.7%
2vtfA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 33.0 3.64e-01 77.4% 63.7%
3bn7A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 44.0 4.68e-01 84.3% 84.3%
2gx8A02 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 43.0 4.61e-01 90.4% 85.9%
1p1lA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 43.0 4.52e-01 92.2% 83.3%
5ih0A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 36.0 3.95e-01 90.4% 72.0%
1r6yA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 44.0 4.60e-01 85.2% 86.4%
2c5dC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 37.0 3.94e-01 72.2% 71.2%
2c42A03 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.58 46.0 3.81e-01 85.2% 91.0%
1tr0A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 42.0 4.41e-01 84.3% 82.1%
4gafB03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 38.0 3.91e-01 72.2% 69.1%
2bg9A01 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.58 52.0 4.30e-01 100.0% 78.1%
3o4oB03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 40.0 4.08e-01 71.3% 73.4%
4z9eA00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.58 41.0 4.65e-01 98.3% 100.0%
1kiaA01 3.30.46.10 Alpha Beta › 2-Layer Sandwich › Glycine N-methyltransferase; chain A, domain 1 › Glycine N-methyltransferase, chain A, domain 1 0.58 33.0 3.82e-01 98.3% 78.3%
4l3tA04 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.57 51.0 3.95e-01 100.0% 75.1%
7o4xA01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 42.0 4.51e-01 88.7% 91.9%
5ylyA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 36.0 3.72e-01 79.1% 66.1%
2bg9C01 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.55 50.0 4.10e-01 100.0% 77.5%
2e1bA02 3.30.980.10 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 0.55 49.0 4.74e-01 99.1% 96.1%
1jkmA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 49.0 3.47e-01 99.1% 78.2%
5xzqF00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 42.0 4.40e-01 85.2% 90.3%
1xzpB00 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.55 41.0 3.90e-01 77.4% 70.2%
2eixA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 35.0 3.70e-01 82.6% 70.8%
3bb5A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 40.0 4.15e-01 84.3% 86.4%
2ed6A01 2.60.40.2770 Mainly Beta › Sandwich › Immunoglobulin-like › WSSV envelope protein-like 0.54 48.0 4.39e-01 100.0% 78.6%
3u6yA00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.54 41.0 4.35e-01 99.1% 92.9%
3j7yU00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.53 43.0 4.38e-01 86.1% 88.3%
1e5tA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 47.0 3.36e-01 99.1% 76.2%
5c4iE01 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.53 43.0 3.58e-01 88.7% 92.9%
3c6kB03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 41.0 3.51e-01 100.0% 51.3%
2xe4A01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 46.0 3.29e-01 100.0% 72.6%
7ylrA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 35.0 3.65e-01 78.3% 74.3%
7pjjA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 36.0 3.48e-01 85.2% 63.1%
3nqzA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 35.0 3.98e-01 91.3% 97.6%
3fkaB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 40.0 3.97e-01 83.5% 95.8%
2wxwA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.51 36.0 3.26e-01 95.7% 53.2%
3qkbA00 3.30.110.70 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hypothetical protein apc22750. Chain B 0.51 37.0 4.11e-01 87.0% 94.7%
4fprB00 3.30.70.2910 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 40.0 3.95e-01 90.4% 78.9%
1k8kD01 3.30.1460.20 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.50 39.0 3.59e-01 100.0% 63.6%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4187121 305.1.1.1 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.81 52.0 5.19e-01 72.2% 63.3%
4403450 305.1.1.1 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.80 53.0 5.30e-01 72.2% 65.0%
4954449 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.77 60.0 6.42e-01 100.0% 93.9%
4169524 305.1.1.1 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.77 53.0 5.37e-01 73.0% 70.4%
4057397 305.1.1.1 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.77 53.0 5.36e-01 71.3% 70.4%
4397160 305.1.1.1 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.77 52.0 5.09e-01 73.0% 64.0%
4161001 305.1.1.0 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase 0.76 49.0 5.39e-01 73.0% 78.9%
5008407 873.1.1.12 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › PF27313 0.76 52.0 5.11e-01 97.4% 64.8%
5029814 328.1.1.1 a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.68 39.0 5.01e-01 95.7% 100.0%
4934956 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.68 48.0 5.36e-01 100.0% 98.8%
3589403 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.68 63.0 6.22e-01 100.0% 95.8%
4574941 242.1.1.5 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N 0.67 48.0 4.93e-01 83.5% 76.4%
3560266 11.1.1.622 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_TMEM131L_3 0.67 43.0 4.21e-01 76.5% 59.2%
3839261 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.66 48.0 4.80e-01 97.4% 73.1%
3609293 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 41.0 3.79e-01 73.0% 49.7%
4977026 873.1.1.1 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R 0.66 49.0 4.69e-01 99.1% 66.7%
4466356 314.1.1.12 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat 0.65 52.0 3.88e-01 85.2% 66.4%
5074977 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.64 49.0 5.34e-01 100.0% 100.0%
5077042 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.64 49.0 5.31e-01 100.0% 97.9%
3706634 304.102.1.2 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruD 0.63 53.0 4.05e-01 91.3% 91.1%
3502475 304.102.1.2 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruD 0.63 45.0 3.69e-01 74.8% 91.4%
4992518 873.1.1.0 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.62 47.0 4.26e-01 100.0% 57.5%
4988662 873.1.1.0 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.62 50.0 4.87e-01 100.0% 77.7%
4928530 328.1.1.0 a+b two layers › IF3-like › AlbA-like › AlbA-like 0.62 40.0 4.67e-01 73.0% 93.8%
3227845 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.61 42.0 2.93e-01 70.4% 22.2%
4201044 304.109.1.10 a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › PF27137 0.61 46.0 4.54e-01 83.5% 75.8%
4881516 11.12.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD 0.60 55.0 4.47e-01 100.0% 78.7%
3254842 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.60 44.0 3.26e-01 95.7% 29.2%
5065326 328.1.1.0 a+b two layers › IF3-like › AlbA-like › AlbA-like 0.60 41.0 4.45e-01 74.8% 83.2%
4029891 328.1.1.1 a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.60 42.0 4.84e-01 99.1% 98.8%
5082575 304.109.1.0 a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e 0.60 40.0 4.58e-01 73.0% 97.5%
3776363 873.1.1.5 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB 0.60 50.0 4.08e-01 91.3% 95.3%
3316508 302.1.1.0 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain 0.59 47.0 4.29e-01 85.2% 89.3%
4941817 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.59 46.0 4.71e-01 84.3% 88.1%
3215795 11.12.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD 0.59 53.0 4.31e-01 100.0% 79.1%
3786767 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.58 41.0 4.28e-01 92.2% 79.0%
5078753 873.1.1.0 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.58 49.0 4.32e-01 100.0% 62.4%
4024812 304.114.1.0 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.58 40.0 4.18e-01 91.3% 78.1%
3401074 11.1.1.179 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.57 40.0 4.06e-01 72.2% 75.7%
1916704 872.12.1.1 a+b two layers › Dodecin subunit-like › Francisella virulence factor › Francisella virulence factor › PF30739 0.57 42.0 4.36e-01 76.5% 98.1%
4948199 328.1.1.0 a+b two layers › IF3-like › AlbA-like › AlbA-like 0.57 42.0 4.61e-01 95.7% 93.7%
4979177 328.1.1.1 a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.56 42.0 4.52e-01 95.7% 90.0%
3520570 328.1.1.1 a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.56 42.0 4.37e-01 95.7% 81.8%
4943974 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 39.0 3.96e-01 72.2% 73.6%
4934212 328.1.1.1 a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.56 42.0 4.57e-01 98.3% 94.7%
3611836 304.112.1.0 a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.55 39.0 4.15e-01 86.1% 85.0%
5044328 304.109.1.0 a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e 0.55 46.0 3.65e-01 89.6% 51.3%
3600809 328.1.1.0 a+b two layers › IF3-like › AlbA-like › AlbA-like 0.55 43.0 3.81e-01 99.1% 57.6%
5026790 328.1.1.1 a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.55 42.0 4.45e-01 99.1% 91.0%
3734371 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.54 42.0 4.26e-01 87.0% 84.3%
4986024 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.54 42.0 3.22e-01 86.1% 68.0%
4001475 273.1.1.1 a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.54 43.0 3.58e-01 86.1% 73.2%
3685597 2003.1.5.73 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.54 42.0 3.35e-01 100.0% 41.7%
3998603 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.52 35.0 3.96e-01 100.0% 90.0%
3938992 7579.1.1.42 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Hydrolase_4 0.51 43.0 3.13e-01 92.2% 60.1%
3712894 273.1.1.2 a+b three layers › PR-1-like › PR-1-like › PR-1-like › CEP76_C 0.51 38.0 3.63e-01 80.0% 81.4%
3607007 306.5.1.0 a+b two layers › Glucose permease domain IIB-like › GTP cyclohydrolase I feedback regulatory protein, GFRP › GTP cyclohydrolase I feedback regulatory protein, GFRP 0.51 45.0 4.47e-01 100.0% 100.0%