Back to structures

OL964745.1__UJD20450.1__T47t1_237__00237

Bact-Vir

OL964745.1__UJD20450.1__T47t1_237__00237

Identity

Accession:
OL964745 ↗
Kingdom:
phage

Quality

90.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 47-109
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00186.25 best DHFR_1 30.1 4.90e-07 85.7% 16.4%
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1juvA00 3.40.430.10 Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A 0.91 84.0 5.71e-01 96.8% 48.2%
2w9hA00 3.40.430.10 Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A 0.77 55.0 4.03e-01 87.3% 29.9%
3cg4A00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.69 55.0 4.38e-01 87.3% 52.4%
1i4nA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.67 58.0 3.93e-01 100.0% 44.6%
1jcmP00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.67 57.0 3.85e-01 100.0% 42.9%
3i42A00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.67 52.0 4.26e-01 85.7% 53.4%
2w43A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.65 56.0 4.32e-01 96.8% 72.9%
3d6jA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.65 53.0 4.15e-01 92.1% 76.2%
3tr2B00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.64 55.0 3.85e-01 100.0% 56.1%
3ky8A01 3.40.430.10 Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A 0.64 52.0 3.80e-01 90.5% 34.5%
1tq8A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.64 49.0 3.98e-01 85.7% 62.2%
3fmgA01 3.40.50.11130 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycoprotein VP7, domain 1 0.62 48.0 3.77e-01 87.3% 49.3%
3ix9A00 3.40.430.10 Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A 0.62 57.0 4.11e-01 100.0% 76.5%
3vayA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.62 51.0 3.95e-01 92.1% 72.7%
4a9aA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 48.0 3.69e-01 90.5% 88.0%
4eyeA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.61 53.0 4.06e-01 100.0% 63.5%
4o53A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.61 53.0 3.58e-01 100.0% 66.1%
7jt8I02 3.90.190.20 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Mur ligase, C-terminal domain 0.61 50.0 3.95e-01 95.2% 76.4%
2aqhA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.61 53.0 3.52e-01 100.0% 63.8%
4x7rA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.60 48.0 3.46e-01 92.1% 56.9%
4lw8A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.60 50.0 3.57e-01 100.0% 69.3%
5eccA00 3.40.430.10 Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A 0.60 54.0 4.01e-01 100.0% 75.8%
7ui4A01 3.20.20.105 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Queuine tRNA-ribosyltransferase-like 0.59 50.0 3.36e-01 98.4% 61.8%
2uyoA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.59 49.0 3.33e-01 100.0% 57.5%
6tdxG01 3.40.1380.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit 0.58 48.0 3.43e-01 95.2% 72.4%
1cz3B00 3.40.430.10 Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A 0.58 52.0 3.82e-01 100.0% 76.2%
3ve9A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.58 48.0 3.50e-01 98.4% 53.9%
2ymmB01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.58 47.0 3.73e-01 96.8% 70.3%
3hdcA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.58 45.0 3.67e-01 87.3% 53.1%
2qrlA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 48.0 3.59e-01 100.0% 98.9%
2v6fA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 49.0 3.11e-01 100.0% 44.2%
7uqyB01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.56 45.0 3.34e-01 100.0% 100.0%
3qg5C02 3.30.160.210 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › DNA double-strand break repair nuclease 0.56 48.0 4.70e-01 100.0% 97.2%
1j0aA02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 43.0 3.77e-01 90.5% 65.4%
3bcvA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.55 45.0 3.30e-01 96.8% 91.8%
2gpjA02 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.55 45.0 3.64e-01 100.0% 91.7%
2cb9A01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 41.0 3.13e-01 87.3% 86.8%
4yhbA02 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.54 44.0 3.61e-01 96.8% 76.5%
4gx0B04 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 45.0 3.63e-01 96.8% 64.1%
3majA01 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 42.0 2.79e-01 90.5% 21.2%
8sp0A01 3.40.50.10140 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Toll/interleukin-1 receptor homology (TIR) domain 0.52 43.0 3.42e-01 100.0% 60.4%
3l8uA00 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.52 44.0 3.45e-01 100.0% 69.5%
2czrA01 3.40.1350.70 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › TBP-interacting protein, N-terminal domain 0.51 40.0 3.43e-01 90.5% 50.9%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
10266 7501.1.1.1 a/b three-layered sandwiches › Dihydrofolate reductases › Dihydrofolate reductases › Dihydrofolate reductases › DHFR_1 0.91 84.0 5.71e-01 96.8% 48.2%
3100074 2007.1.3.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.71 55.0 4.45e-01 85.7% 53.7%
4076512 2007.1.3.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.68 55.0 4.40e-01 88.9% 52.0%
4944058 2007.1.3.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.66 53.0 4.40e-01 88.9% 55.7%
3961923 2007.1.3.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.66 52.0 4.42e-01 87.3% 59.0%
5024789 2003.1.1.22 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GFO_IDH_MocA 0.65 53.0 4.03e-01 92.1% 52.9%
3970921 7545.1.1.1 a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DsrE 0.65 52.0 4.30e-01 92.1% 74.2%
4968801 7501.1.1.2 a/b three-layered sandwiches › Dihydrofolate reductases › Dihydrofolate reductases › Dihydrofolate reductases › RibD_C 0.62 54.0 3.69e-01 100.0% 60.4%
4952359 2007.10.1.0 a/b three-layered sandwiches › Flavodoxin-like › Hypothetical protein MTH538 › Hypothetical protein MTH538 0.62 49.0 4.02e-01 87.3% 52.5%
3664739 2006.1.1.16 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_like,Hydrolase_6 0.62 49.0 3.61e-01 92.1% 74.4%
4993793 7545.1.1.3 a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DrsE_2 0.62 49.0 3.95e-01 92.1% 77.0%
4260097 2003.1.1.143 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NmrA, NAD_binding_10 0.61 54.0 3.41e-01 100.0% 43.9%
3710751 2003.1.1.5 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › ADH_zinc_N 0.61 53.0 3.88e-01 100.0% 63.9%
3182597 2003.1.1.143 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NmrA, NAD_binding_10 0.61 54.0 3.37e-01 100.0% 48.3%
3989593 2003.1.7.5 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › 5-FTHF_cyc-lig 0.61 44.0 3.24e-01 77.8% 35.0%
4030539 314.1.1.12 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat 0.61 51.0 3.32e-01 100.0% 98.2%
2580403 7501.1.1.1 a/b three-layered sandwiches › Dihydrofolate reductases › Dihydrofolate reductases › Dihydrofolate reductases › DHFR_1 0.60 53.0 3.81e-01 96.8% 70.9%
5037087 2003.1.1.5 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › ADH_zinc_N 0.60 52.0 3.37e-01 100.0% 34.8%
4609343 7512.1.1.12 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_tran_28_C 0.60 51.0 3.78e-01 100.0% 84.4%
3935413 2006.1.6.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.60 47.0 3.38e-01 87.3% 34.9%
137569 7501.1.1.2 a/b three-layered sandwiches › Dihydrofolate reductases › Dihydrofolate reductases › Dihydrofolate reductases › RibD_C 0.60 52.0 3.81e-01 100.0% 75.1%
4975041 2003.1.5.35 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › LCM 0.59 51.0 3.42e-01 100.0% 52.6%
5057881 2003.1.5.42 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_21 0.59 49.0 3.35e-01 100.0% 63.0%
3878541 2007.9.1.2 a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › SEFIR 0.59 47.0 3.48e-01 93.7% 56.8%
2604197 7514.1.1.2 a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › SIP 0.58 46.0 3.89e-01 92.1% 74.8%
3966175 2007.1.3.6 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › FleQ 0.58 44.0 3.56e-01 87.3% 45.0%
1841334 7501.1.1.1 a/b three-layered sandwiches › Dihydrofolate reductases › Dihydrofolate reductases › Dihydrofolate reductases › DHFR_1 0.58 52.0 3.94e-01 100.0% 63.8%
5066525 2004.1.1.67 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CbiA 0.58 47.0 3.25e-01 95.2% 99.2%
2722571 7512.1.1.0 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.58 41.0 4.13e-01 77.8% 97.0%
3970400 2003.1.5.165 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11, Methyltransf_23 0.57 50.0 3.32e-01 100.0% 51.3%
3969931 7512.1.1.10 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_28 0.57 47.0 3.36e-01 100.0% 80.4%
3921925 2003.1.5.66 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.57 47.0 3.32e-01 98.4% 82.6%
5057136 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.57 48.0 3.42e-01 100.0% 76.4%
5083576 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.56 47.0 3.35e-01 100.0% 78.7%
135007 2485.1.1.4 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › AhpC-TSA 0.56 43.0 3.40e-01 87.3% 46.3%
5077076 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.56 48.0 3.31e-01 100.0% 75.4%
5063790 2006.1.4.12 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_6 0.56 48.0 3.97e-01 100.0% 54.2%
5020658 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.55 45.0 3.01e-01 100.0% 73.8%
3219507 2006.1.6.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.55 41.0 3.17e-01 87.3% 39.6%
3164506 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.55 44.0 3.03e-01 100.0% 62.4%
3331343 2006.1.6.12 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_2 0.54 42.0 3.26e-01 87.3% 95.5%
5021827 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 42.0 3.01e-01 90.5% 80.0%
3466832 207.1.1.143 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14, LRR_R13L1-DRL21 0.54 39.0 2.24e-01 79.4% 9.0%
3286098 7512.1.1.20 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › EryCIII-like_C 0.54 46.0 3.41e-01 100.0% 85.6%
5035272 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.53 42.0 2.73e-01 88.9% 26.0%
5072742 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.53 42.0 2.91e-01 100.0% 76.7%
3909298 1160.1.1.1 beta duplicates or obligate multimers › Endoglin orphan region (OR) domain › Endoglin orphan region (OR) domain › Endoglin orphan region (OR) domain › TGFBR3_N 0.52 44.0 3.35e-01 100.0% 55.9%
3316459 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.52 38.0 2.48e-01 82.5% 29.7%
3955005 7516.1.1.0 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases 0.51 42.0 3.00e-01 100.0% 69.8%
3684326 207.1.1.95 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14 0.50 38.0 2.65e-01 84.1% 39.6%