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OM033134.1__ULG01358.1__phiA009_0015__00015

Bact-Vir

OM033134.1__ULG01358.1__phiA009_0015__00015

Identity

Accession:
OM033134 ↗
Kingdom:
phage

Quality

71.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Plateaulakevirus› Aeromonas_phage_phiA009

TaxID: 2904307

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-76
PDB
Domain cluster: rep: rifoxyc1_full_scaffold_3_prodigal-single.1__X__X__00232__D1-65
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1jqpA02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.61 43.0 3.10e-01 75.0% 94.3%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 47.0 4.82e-01 82.9% 98.6%
3s5wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 41.0 2.62e-01 72.4% 40.7%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 46.0 4.78e-01 82.9% 98.6%
2wtzA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.57 40.0 2.92e-01 73.7% 25.6%
3tu3B01 3.30.720.80 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.56 37.0 3.79e-01 82.9% 68.4%
3ic9A03 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 39.0 3.36e-01 72.4% 95.1%
5b4wA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 43.0 2.75e-01 86.8% 89.2%
3c4bA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 40.0 4.19e-01 76.3% 94.0%
1ijqA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.55 41.0 2.95e-01 81.6% 46.5%
2b4wA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 41.0 2.91e-01 84.2% 47.1%
3k2tA01 3.30.505.50 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain 0.55 29.0 3.46e-01 71.1% 80.4%
1yr1A00 3.40.50.10960 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 45.0 4.01e-01 97.4% 61.3%
3a0oA03 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.53 43.0 3.03e-01 94.7% 81.9%
1s68A02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.52 36.0 3.27e-01 73.7% 92.9%
2mdrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 36.0 3.44e-01 75.0% 78.7%
7b9cA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 38.0 2.49e-01 81.6% 52.4%
4dsdA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.51 41.0 3.58e-01 92.1% 65.9%
3dueA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.51 41.0 3.56e-01 93.4% 83.5%
3bwsA01 2.60.40.3070 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 36.0 3.50e-01 75.0% 97.6%
4bwgD00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 35.0 3.32e-01 73.7% 92.8%
2r6uA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.50 34.0 2.97e-01 71.1% 47.5%
3b59A02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.50 35.0 2.92e-01 98.7% 38.5%
2k49A00 2.30.29.80 Mainly Beta › Roll › PH-domain like › 0.50 35.0 3.06e-01 72.4% 83.1%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3245145 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.71 51.0 3.29e-01 75.0% 27.9%
4027502 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 47.0 5.10e-01 73.7% 96.9%
3414377 309.1.1.20 ↗ a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_C, M16C_assoc, PreP_C 0.62 47.0 2.62e-01 80.3% 26.1%
3987919 274.1.1.25 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGF 0.62 38.0 3.41e-01 84.2% 42.7%
4969515 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.62 43.0 2.70e-01 72.4% 35.5%
4002892 109.4.1.2561 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FATC 0.61 43.0 2.56e-01 73.7% 13.1%
3793797 5.1.5.93 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_EMC1_N 0.59 44.0 2.95e-01 81.6% 25.0%
3777718 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.58 43.0 2.50e-01 82.9% 23.2%
3579710 5.1.10.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.58 43.0 3.93e-01 81.6% 87.6%
3511321 5.1.4.298 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_ELP1_1st, Beta-prop_ELP1_2nd 0.57 47.0 2.86e-01 96.1% 57.6%
3930846 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.57 40.0 4.23e-01 77.6% 80.0%
2817443 5.1.4.37 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.57 42.0 2.62e-01 81.6% 21.6%
3577993 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 41.0 3.01e-01 81.6% 35.4%
4937122 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.55 39.0 4.00e-01 76.3% 92.0%
4031999 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.54 38.0 3.75e-01 75.0% 71.8%
4602962 2.1.1.2 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.54 44.0 3.59e-01 90.8% 84.0%
4279208 236.1.1.0 ↗ beta barrels › GroES-like › GroES-related › Alcohol dehydrogenase-like, N-terminal domain 0.53 40.0 3.14e-01 78.9% 48.5%
3538579 5.1.5.135 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Sema 0.52 41.0 2.53e-01 86.8% 89.3%
2641776 2.1.1.2 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.52 40.0 3.51e-01 88.2% 85.9%
3245838 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 43.0 2.41e-01 96.1% 33.9%
5082700 2003.1.3.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain 0.51 44.0 2.81e-01 97.4% 91.4%
4079885 274.1.1.25 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGF 0.51 34.0 3.21e-01 85.5% 55.8%
4014976 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 42.0 2.73e-01 100.0% 72.6%
5050497 2003.1.3.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Pyr_redox_2 0.50 43.0 2.46e-01 96.1% 74.4%
4028381 2.1.1.2 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.50 39.0 3.55e-01 84.2% 79.0%
D2 medium residues 79-120
PDB
Domain cluster: representative
CATH (77)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1bkbA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.72 54.0 4.67e-01 81.0% 86.2%
2weiA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.72 57.0 4.45e-01 88.1% 92.2%
6td3B01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.71 55.0 4.14e-01 85.7% 87.4%
2w5aA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.71 55.0 4.81e-01 85.7% 92.2%
2hw6A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.71 55.0 4.31e-01 85.7% 90.9%
2w4oA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.70 55.0 4.54e-01 88.1% 88.3%
2y7jA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.70 54.0 4.23e-01 85.7% 96.7%
2xzsA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.69 54.0 4.21e-01 85.7% 90.1%
4ks7A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.69 54.0 4.10e-01 85.7% 78.6%
4pmwA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 51.0 3.99e-01 81.0% 96.7%
2rghA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.69 54.0 3.36e-01 88.1% 55.8%
4jr7A02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.68 52.0 3.80e-01 85.7% 93.3%
3o2zP00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 51.0 3.67e-01 81.0% 66.4%
3a7fA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.68 52.0 4.05e-01 85.7% 86.0%
4fg9A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.68 54.0 4.39e-01 88.1% 89.9%
5jzjA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.67 56.0 4.38e-01 97.6% 96.8%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 58.0 4.75e-01 100.0% 68.4%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 57.0 5.58e-01 97.6% 97.9%
4o38A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.67 54.0 4.13e-01 90.5% 93.8%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.67 56.0 5.47e-01 95.2% 97.8%
1f8wA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.66 53.0 3.56e-01 90.5% 46.1%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.66 56.0 5.26e-01 97.6% 88.5%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 56.0 5.05e-01 100.0% 83.1%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 56.0 5.06e-01 100.0% 93.3%
6l6jA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.65 53.0 3.78e-01 95.2% 92.6%
3dghA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.65 53.0 3.88e-01 95.2% 95.9%
3icsA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.65 52.0 3.40e-01 90.5% 53.8%
4eqsA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.65 52.0 3.49e-01 90.5% 45.9%
3k30A03 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.64 52.0 3.76e-01 95.2% 94.7%
3f8dA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.64 52.0 3.84e-01 95.2% 95.1%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 55.0 4.68e-01 100.0% 63.0%
3iwaA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.64 50.0 3.46e-01 90.5% 42.7%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.64 56.0 5.20e-01 100.0% 83.3%
4m69A00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.64 49.0 2.97e-01 85.7% 26.8%
4tm3A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.64 51.0 2.99e-01 95.2% 41.5%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 54.0 4.79e-01 100.0% 84.4%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 56.0 4.51e-01 100.0% 57.5%
3cgbA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.64 50.0 3.38e-01 88.1% 46.4%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 53.0 5.14e-01 97.6% 93.9%
1xzpB00 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.63 48.0 3.52e-01 88.1% 40.5%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 54.0 4.81e-01 100.0% 74.6%
4eqmA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.63 53.0 4.26e-01 100.0% 92.1%
1igqB00 2.30.30.150 Mainly Beta › Roll › SH3 type barrels. › KorB, C-terminal domain 0.63 54.0 4.95e-01 100.0% 75.4%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 53.0 4.80e-01 100.0% 91.5%
1zuuA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 48.0 4.44e-01 88.1% 96.4%
1k1zA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 52.0 4.38e-01 100.0% 79.5%
3rauA00 1.25.40.280 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › alix/aip1 like domains 0.62 44.0 2.64e-01 78.6% 28.5%
5cemA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.62 51.0 4.35e-01 97.6% 94.5%
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 52.0 4.95e-01 100.0% 90.4%
1efzA00 3.20.20.105 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Queuine tRNA-ribosyltransferase-like 0.60 48.0 2.79e-01 83.3% 13.7%
3q6aB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.60 49.0 3.58e-01 100.0% 84.3%
6vp6A03 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 49.0 2.95e-01 95.2% 19.3%
3oc4B01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 47.0 3.12e-01 90.5% 46.7%
3n9xA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 48.0 3.41e-01 100.0% 58.4%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 48.0 3.84e-01 100.0% 52.1%
3m2oA01 3.30.720.120 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.58 43.0 4.11e-01 83.3% 67.9%
2vpjA00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.58 49.0 3.01e-01 100.0% 26.3%
1ybyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 43.0 3.81e-01 83.3% 89.1%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 47.0 4.46e-01 100.0% 94.3%
1xfdA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.57 43.0 2.57e-01 100.0% 15.3%
2d9xA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 39.0 3.00e-01 76.2% 35.5%
4j31A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 41.0 2.44e-01 83.3% 40.7%
2pm6A00 1.25.40.1030 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.56 38.0 2.25e-01 71.4% 8.4%
3ghjA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.56 42.0 3.17e-01 83.3% 76.7%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.56 45.0 4.39e-01 100.0% 94.1%
1xipA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 45.0 2.68e-01 100.0% 16.6%
1f1sA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.54 43.0 3.68e-01 100.0% 75.6%
2vnuD04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 44.0 3.74e-01 100.0% 83.5%
1x0tA02 6.20.50.20 Special › Other non-globular › N-terminal domain of TfIIb › 0.54 38.0 3.79e-01 76.2% 73.3%
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 38.0 3.44e-01 81.0% 50.0%
2pn2A00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.54 38.0 2.79e-01 81.0% 32.1%
5ic7A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 42.0 2.59e-01 100.0% 37.1%
1u2kA02 1.10.420.10 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 2 › Peroxidase, domain 2 0.52 38.0 2.82e-01 81.0% 29.7%
2kcjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 37.0 2.94e-01 81.0% 36.1%
2ymsA00 2.40.128.630 Mainly Beta › Beta Barrel › Lipocalin › 0.51 41.0 3.09e-01 100.0% 58.1%
2rjqA02 3.40.1620.60 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.51 36.0 3.29e-01 90.5% 61.6%
2kv1A01 2.170.150.20 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Peptide methionine sulfoxide reductase. 0.50 36.0 3.04e-01 83.3% 54.7%
ECOD (87)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5083382 2.1.1.13 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-5a 0.73 55.0 4.85e-01 81.0% 90.0%
4475796 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.73 54.0 4.97e-01 81.0% 96.4%
4062751 2.1.1.13 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-5a 0.72 54.0 4.78e-01 81.0% 88.3%
4259370 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 53.0 4.89e-01 81.0% 94.5%
5057503 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.71 53.0 4.70e-01 81.0% 91.7%
3898672 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 53.0 4.62e-01 83.3% 76.9%
3952480 4.1.1.292 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Rv2311 0.70 53.0 5.19e-01 81.0% 82.2%
3455635 206.1.1.70 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 0.70 54.0 3.23e-01 85.7% 28.6%
5025080 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 54.0 5.11e-01 83.3% 94.0%
3953025 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 55.0 4.39e-01 81.0% 73.8%
None — 0.69 55.0 3.17e-01 90.5% 50.0%
4250239 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.69 52.0 4.47e-01 81.0% 86.2%
3909317 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 53.0 5.09e-01 85.7% 100.0%
3406803 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.69 55.0 4.69e-01 90.5% 74.3%
4104915 4.1.1.245 ↗ beta barrels › SH3 › SH3 › SH3 › SspH 0.69 60.0 5.36e-01 100.0% 76.7%
4169111 2003.1.2.12 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › DAO 0.69 54.0 3.43e-01 90.5% 58.2%
4064354 4.1.1.245 ↗ beta barrels › SH3 › SH3 › SH3 › SspH 0.68 59.0 5.31e-01 100.0% 78.3%
4963227 2.1.1.369 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF5812 0.68 49.0 4.36e-01 81.0% 83.1%
3639062 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.68 54.0 3.32e-01 90.5% 46.2%
3525406 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.67 58.0 4.33e-01 100.0% 44.5%
3201592 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.67 49.0 3.12e-01 81.0% 16.8%
3582418 2.6.1.0 ↗ beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.67 51.0 3.49e-01 83.3% 50.7%
4975151 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 51.0 4.65e-01 81.0% 96.4%
3272351 2003.1.2.5 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like 0.67 53.0 3.20e-01 90.5% 41.6%
4013709 2003.1.2.58 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 0.67 54.0 3.15e-01 90.5% 28.4%
None — 0.67 59.0 3.18e-01 100.0% 5.2%
3336463 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.67 53.0 4.36e-01 88.1% 47.4%
4987320 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 50.0 4.45e-01 81.0% 81.7%
3212056 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 49.0 4.04e-01 81.0% 81.2%
161180 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.66 52.0 3.84e-01 90.5% 86.8%
3923813 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 58.0 5.03e-01 100.0% 87.7%
5071421 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.66 52.0 3.38e-01 90.5% 50.7%
3896519 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 54.0 5.09e-01 90.5% 100.0%
3603442 101.8.1.1 ↗ alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f,Anticodon_2 0.66 55.0 3.12e-01 100.0% 9.1%
4946165 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 57.0 5.25e-01 100.0% 81.8%
3765126 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 56.0 5.16e-01 97.6% 96.4%
3749194 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.66 54.0 4.82e-01 97.6% 82.8%
4524466 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.66 57.0 4.88e-01 100.0% 70.0%
4168836 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.65 50.0 4.21e-01 83.3% 85.7%
4307428 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.65 52.0 3.41e-01 90.5% 52.8%
3481726 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 51.0 4.64e-01 90.5% 90.0%
4002958 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.65 52.0 4.96e-01 90.5% 78.0%
3482868 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 53.0 4.93e-01 97.6% 96.4%
3590194 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.64 52.0 3.36e-01 90.5% 50.7%
4947995 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 56.0 5.17e-01 100.0% 80.0%
3958255 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.64 49.0 2.91e-01 88.1% 49.9%
3914746 4.1.1.128 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_4 0.64 56.0 4.78e-01 100.0% 67.1%
340344 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.64 50.0 3.68e-01 88.1% 86.7%
4119319 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.64 49.0 2.83e-01 90.5% 32.9%
3428809 387.1.1.0 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related 0.64 42.0 4.57e-01 73.8% 96.7%
4122811 2005.1.1.17 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f 0.64 52.0 3.20e-01 100.0% 15.4%
4246369 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.63 49.0 2.86e-01 90.5% 34.4%
5079023 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 50.0 4.97e-01 90.5% 88.9%
4890270 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.63 53.0 4.94e-01 97.6% 85.2%
5058672 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 47.0 4.26e-01 83.3% 93.2%
None — 0.63 45.0 2.64e-01 78.6% 8.5%
None — 0.63 51.0 2.92e-01 95.2% 32.8%
4249063 2002.1.1.121 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,Mob_synth_C 0.62 43.0 2.54e-01 71.4% 9.2%
1879626 5.1.4.38 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC1 0.62 49.0 3.15e-01 92.9% 32.3%
3446217 5.1.3.65 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.62 46.0 2.84e-01 85.7% 22.8%
4218690 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.62 50.0 3.68e-01 95.2% 89.6%
3708593 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 45.0 3.34e-01 81.0% 74.8%
3948516 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.61 45.0 3.93e-01 81.0% 89.2%
3707400 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.61 49.0 2.80e-01 95.2% 30.7%
3601532 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.61 49.0 2.81e-01 95.2% 37.8%
3760425 109.4.1.37 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › BRO1 0.61 44.0 2.61e-01 81.0% 25.2%
3469800 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 50.0 4.16e-01 97.6% 65.0%
3616382 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.61 48.0 4.49e-01 100.0% 88.3%
3471065 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.60 48.0 2.81e-01 95.2% 31.8%
3618504 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.60 44.0 3.97e-01 88.1% 55.0%
4117744 2003.1.2.16 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.59 45.0 2.79e-01 90.5% 41.0%
4028623 5.1.3.135 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Kelch_KLHDC2_KLHL20_DRC7, Beta-prop_ATRN-LZTR1 0.59 45.0 2.84e-01 100.0% 27.1%
3576958 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.57 44.0 3.05e-01 100.0% 42.1%
5032252 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 42.0 4.11e-01 85.7% 88.0%
4025894 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 39.0 2.99e-01 81.0% 28.4%
5050109 375.1.1.31 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.56 43.0 3.65e-01 95.2% 62.4%
3987799 4221.1.1.1 ↗ a+b two layers › YkuJ-like › YkuJ-like › YkuJ-like › DUF1797 0.55 44.0 3.92e-01 100.0% 64.3%
3580264 366.1.1.8 ↗ few secondary structure elements › Blood coagulation inhibitor (disintegrin) › Blood coagulation inhibitor (disintegrin) › Blood coagulation inhibitor (disintegrin) › ADAMTS_CR_3 0.54 46.0 3.48e-01 90.5% 50.0%
3641336 2003.1.5.353 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PIP5K 0.53 36.0 2.38e-01 73.8% 15.1%
5043972 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.52 38.0 2.99e-01 76.2% 33.3%
4948056 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 38.0 2.95e-01 76.2% 33.0%
3896520 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 38.0 3.50e-01 83.3% 66.7%
3495913 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 40.0 3.69e-01 90.5% 78.3%
4440689 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.51 35.0 3.19e-01 76.2% 80.0%
3713064 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.51 34.0 3.64e-01 71.4% 100.0%
3271679 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 36.0 2.64e-01 83.3% 30.3%
4977068 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.50 36.0 2.79e-01 76.2% 30.8%
D3 medium residues 126-178
PDB
Domain cluster: representative
CATH (60)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qcuB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.72 52.0 3.42e-01 77.4% 56.3%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 51.0 5.38e-01 73.6% 100.0%
2wqmA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.71 51.0 4.71e-01 77.4% 91.4%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 54.0 5.49e-01 81.1% 94.3%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.71 51.0 5.07e-01 75.5% 83.3%
4tm3A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.71 60.0 3.52e-01 94.3% 39.6%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 57.0 5.06e-01 88.7% 84.0%
3cgbA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.69 50.0 3.51e-01 77.4% 46.4%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 55.0 5.11e-01 86.8% 84.8%
3ossC00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.69 50.0 4.68e-01 77.4% 84.6%
3s5wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.69 58.0 3.44e-01 94.3% 39.5%
1x8bA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.68 52.0 4.50e-01 83.0% 92.9%
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 53.0 5.47e-01 83.0% 96.1%
2x7fC01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.68 48.0 4.01e-01 75.5% 88.3%
3dghA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.67 55.0 4.24e-01 92.5% 89.4%
3a7fA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.67 47.0 3.96e-01 75.5% 83.9%
3f8dA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.67 55.0 4.26e-01 94.3% 87.0%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.66 49.0 4.86e-01 79.2% 91.1%
5cqfA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.65 53.0 3.18e-01 94.3% 39.4%
6l6jA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.65 54.0 3.99e-01 92.5% 78.7%
4kbmB01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.64 50.0 4.98e-01 88.7% 92.7%
3rauA00 1.25.40.280 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › alix/aip1 like domains 0.64 43.0 2.63e-01 71.7% 42.5%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.64 51.0 4.65e-01 92.5% 78.7%
2bklA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.64 56.0 3.43e-01 100.0% 17.2%
4adiA01 2.60.98.30 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Rubella membrane glycoprotein E1, domain 1 0.63 48.0 4.31e-01 84.9% 85.7%
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 51.0 5.21e-01 100.0% 94.2%
5xilA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.61 53.0 4.04e-01 98.1% 64.1%
2cn2A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 52.0 3.14e-01 100.0% 17.4%
2fyxA00 3.30.70.1290 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transposase IS200-like 0.61 52.0 3.94e-01 98.1% 42.3%
7obmA01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.60 49.0 3.12e-01 100.0% 17.8%
3hj4A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.60 50.0 3.89e-01 100.0% 83.2%
1xipA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 51.0 3.12e-01 100.0% 31.3%
4zm3B01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.59 52.0 3.85e-01 100.0% 69.7%
7ne4A01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.58 47.0 2.96e-01 100.0% 15.5%
2dt9A01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.58 48.0 4.32e-01 98.1% 67.6%
2ymsA00 2.40.128.630 Mainly Beta › Beta Barrel › Lipocalin › 0.58 49.0 3.82e-01 100.0% 87.9%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.58 47.0 2.94e-01 100.0% 53.6%
3pubA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.57 44.0 3.26e-01 90.6% 97.5%
1fvuB00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.57 44.0 3.49e-01 88.7% 74.4%
4m0hA01 2.60.120.1440 Mainly Beta › Sandwich › Jelly Rolls › 0.57 45.0 3.47e-01 94.3% 82.7%
3qr8A02 6.20.150.10 Special › Other non-globular › Chondroitinase Ac; Chain A, domain 3 › 0.57 36.0 3.32e-01 77.4% 45.2%
2hc5A01 3.30.160.170 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like 0.56 46.0 3.92e-01 98.1% 66.3%
2vt8A00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.56 44.0 3.45e-01 98.1% 83.2%
3i35A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 41.0 4.03e-01 83.0% 94.7%
6ywnA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.55 44.0 3.71e-01 100.0% 93.5%
4rbnA01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 47.0 3.63e-01 100.0% 53.5%
2mqdA00 3.30.1460.60 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.55 42.0 3.50e-01 96.2% 79.0%
3tviA02 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.54 46.0 3.33e-01 98.1% 32.7%
4p78C00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.54 41.0 3.94e-01 90.6% 84.8%
3oajA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.54 41.0 3.10e-01 86.8% 41.0%
4hc5D00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 40.0 3.20e-01 88.7% 79.4%
4emyA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 45.0 3.25e-01 100.0% 46.5%
1vgyA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.53 44.0 2.90e-01 100.0% 36.8%
5tf2A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 41.0 2.68e-01 100.0% 37.9%
5wceA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.52 42.0 3.28e-01 94.3% 44.2%
4zrlA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.52 42.0 3.44e-01 100.0% 90.6%
1kw3B02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 39.0 2.97e-01 88.7% 35.7%
3payB02 2.60.40.2090 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 41.0 3.21e-01 98.1% 58.3%
8ouzD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 42.0 2.83e-01 98.1% 88.6%
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.50 32.0 3.11e-01 71.7% 53.0%
ECOD (71)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4675886 2003.1.3.8 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Mqo 0.78 57.0 3.24e-01 77.4% 46.4%
1492426 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.74 54.0 3.82e-01 77.4% 52.6%
3605643 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.72 62.0 3.81e-01 100.0% 35.7%
3784770 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.72 57.0 5.05e-01 84.9% 93.3%
3317787 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 50.0 5.19e-01 75.5% 96.0%
3486271 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 57.0 4.74e-01 86.8% 57.8%
3657336 206.1.1.74 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr 0.71 49.0 3.06e-01 75.5% 13.0%
3570700 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.70 54.0 4.24e-01 84.9% 46.1%
3205488 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.69 52.0 3.37e-01 81.1% 25.5%
3973131 2003.1.3.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain 0.68 58.0 3.41e-01 94.3% 39.8%
3722142 206.1.1.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.68 48.0 3.10e-01 75.5% 27.2%
4984648 512.1.1.0 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.68 58.0 5.15e-01 100.0% 70.0%
3261529 5.1.5.27 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › APEH_N 0.67 57.0 3.46e-01 100.0% 23.6%
3969301 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.67 55.0 4.21e-01 94.3% 88.5%
4941250 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.67 51.0 4.73e-01 90.6% 65.7%
3618688 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.66 49.0 3.06e-01 81.1% 17.2%
5017134 208.1.1.1 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep 0.66 45.0 3.04e-01 71.7% 21.5%
4101533 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.66 46.0 2.78e-01 75.5% 38.5%
3389161 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 55.0 4.55e-01 92.5% 57.9%
3790784 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.66 56.0 3.56e-01 96.2% 19.2%
3220598 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.65 54.0 3.94e-01 94.3% 92.9%
3201592 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.65 45.0 2.96e-01 71.7% 17.7%
3819875 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.65 56.0 3.51e-01 100.0% 37.0%
3469420 206.1.2.2 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › PIP5K 0.64 45.0 2.81e-01 77.4% 85.0%
3402605 316.1.1.36 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central 0.64 46.0 3.26e-01 79.2% 24.8%
4025065 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.64 48.0 2.92e-01 81.1% 17.2%
3218983 316.1.1.36 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central 0.63 47.0 3.46e-01 81.1% 30.0%
2866962 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.63 53.0 4.30e-01 98.1% 63.0%
4093836 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 55.0 5.27e-01 96.2% 91.7%
3437239 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.63 49.0 2.98e-01 84.9% 22.5%
4116168 316.1.1.36 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central 0.62 46.0 3.31e-01 81.1% 26.2%
3479066 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.62 45.0 3.62e-01 79.2% 38.2%
3635775 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.62 44.0 3.17e-01 79.2% 25.6%
4870495 304.169.1.1 ↗ a+b two layers › Alpha-beta plaits › RspWYL1 C-terminal domain › RspWYL1 C-terminal domain › WYL 0.61 51.0 4.18e-01 98.1% 61.1%
5014689 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.61 51.0 4.97e-01 100.0% 95.0%
3664013 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.61 47.0 2.97e-01 86.8% 28.5%
3544618 4292.2.1.0 ↗ a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.61 51.0 4.48e-01 100.0% 95.3%
4946684 2004.1.1.308 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.61 52.0 3.18e-01 98.1% 23.1%
4991694 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 51.0 3.23e-01 98.1% 25.6%
3514010 5.1.4.218 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_IFT80_2nd 0.61 48.0 3.11e-01 92.5% 40.4%
3240076 389.1.2.0 ↗ few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain 0.61 47.0 4.45e-01 88.7% 84.6%
5002092 283.2.1.0 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like 0.61 47.0 4.10e-01 90.6% 55.6%
3803793 5.1.5.66 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_1 0.59 46.0 2.92e-01 86.8% 25.8%
3245031 316.1.1.36 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central 0.59 44.0 3.57e-01 81.1% 39.1%
3710675 375.1.1.7 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.59 41.0 4.25e-01 75.5% 97.9%
4094714 4292.2.1.1 ↗ a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain › FlaG 0.58 47.0 4.19e-01 100.0% 76.5%
3186839 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 47.0 2.89e-01 96.2% 36.5%
4023351 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.57 48.0 3.62e-01 100.0% 43.8%
5033078 304.8.1.10 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.57 46.0 4.31e-01 98.1% 71.4%
4987642 304.8.1.10 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.57 46.0 3.66e-01 98.1% 41.7%
4972785 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 44.0 4.50e-01 90.6% 100.0%
3190226 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 42.0 3.31e-01 83.0% 89.9%
4966836 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 42.0 4.21e-01 86.8% 98.2%
4400911 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.56 37.0 3.95e-01 88.7% 92.5%
5054123 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.56 45.0 4.26e-01 100.0% 90.0%
3465992 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.56 46.0 2.91e-01 98.1% 35.5%
3980798 79.1.1.13 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Gp5_trimer_C 0.55 39.0 3.23e-01 77.4% 42.9%
4024012 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 44.0 3.07e-01 92.5% 40.4%
3186255 223.1.1.21 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › HODM_asu-like 0.54 46.0 2.85e-01 96.2% 62.2%
5012656 330.5.1.0 ↗ a+b two layers › dsRBD-like › Bacillus phage protein › Bacillus phage protein 0.54 46.0 4.02e-01 100.0% 78.8%
3584345 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.54 40.0 3.16e-01 88.7% 66.7%
3593059 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.53 42.0 3.34e-01 100.0% 82.2%
3487462 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.53 42.0 3.35e-01 98.1% 64.6%
4172303 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.53 37.0 2.86e-01 75.5% 72.8%
4202852 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.53 39.0 3.16e-01 81.1% 82.9%
3672651 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.52 42.0 3.13e-01 100.0% 75.9%
3388135 4292.2.1.1 ↗ a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain › FlaG 0.52 41.0 3.87e-01 100.0% 84.0%
3456076 5.1.3.159 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF7595 0.52 43.0 2.90e-01 98.1% 31.8%
3435547 5.3.1.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.52 41.0 3.31e-01 94.3% 62.5%
3673032 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 39.0 3.65e-01 84.9% 90.0%
4663920 79.1.1.13 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Gp5_trimer_C 0.52 38.0 3.08e-01 84.9% 38.3%
D4 medium residues 193-296
PDB
Domain cluster: rep: NC_027299.1__YP_009146220.1__SUFP_046__00046__D4-101
D5 medium residues 364-467
PDB