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OM046624.1__UNA05768.1__vBYenM4218_054__00054

Bact-Vir

OM046624.1__UNA05768.1__vBYenM4218_054__00054

Identity

Accession:
OM046624 ↗
Kingdom:
phage

Quality

87.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Peduoviridae› Firavirus› Yersinia_phage_vB_YenM_42.18

TaxID: 2918926

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 25-107
PDB
Domain cluster: rep: OR089151.1__WIT94469.1__CRP19_000038__00038__D32-107
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1m1gB03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.81 46.0 5.19e-01 100.0% 74.6%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 45.0 5.32e-01 100.0% 82.5%
3pmiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 43.0 4.78e-01 100.0% 72.3%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.72 47.0 4.49e-01 100.0% 57.9%
1u3oA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 45.0 4.98e-01 97.6% 90.3%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.67 41.0 4.47e-01 100.0% 76.1%
1azpA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.65 43.0 4.73e-01 97.6% 84.8%
1ou8A00 2.30.30.220 Mainly Beta › Roll › SH3 type barrels. › SspB-like 0.57 43.0 3.99e-01 100.0% 63.2%
2nysA00 2.30.30.220 Mainly Beta › Roll › SH3 type barrels. › SspB-like 0.57 44.0 3.92e-01 100.0% 59.0%
3so6A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 46.0 3.99e-01 98.8% 83.9%
1uyvB02 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.54 35.0 2.38e-01 95.2% 18.9%
3d8dA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 45.0 3.90e-01 97.6% 89.9%
1wguA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 45.0 4.11e-01 96.4% 97.4%
2ffsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 33.0 2.76e-01 92.8% 36.6%
7byjA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 45.0 4.37e-01 96.4% 89.5%
3voqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 45.0 4.09e-01 98.8% 81.9%
3cueC00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 38.0 3.29e-01 79.5% 86.7%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.51 44.0 3.90e-01 96.4% 82.3%
1mknA00 2.20.60.10 Mainly Beta › Single Sheet › Heparin-binding Growth Factor, Midkine; Chain A › Pleiotrophin/Midkine, N-terminal domain 0.51 30.0 3.34e-01 83.1% 78.0%
1h10A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 44.0 3.98e-01 97.6% 83.8%
3n7cA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 43.0 4.00e-01 96.4% 93.5%
1ntvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 43.0 3.59e-01 96.4% 79.6%
2lkoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 44.0 3.74e-01 97.6% 71.7%
2gnxA02 3.30.450.240 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.50 34.0 3.23e-01 72.3% 76.1%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4084890 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 54.0 5.98e-01 98.8% 96.9%
4185547 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 54.0 5.44e-01 100.0% 76.5%
4946972 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 48.0 4.65e-01 100.0% 61.1%
4250402 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 36.0 4.63e-01 94.0% 95.6%
165392 4.1.2.1 ↗ beta barrels › SH3 › SH3 › Stringent starvation protein B, SspB › SspB 0.58 44.0 3.95e-01 100.0% 57.5%
3484017 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 48.0 4.29e-01 96.4% 91.2%
4980209 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 48.0 3.92e-01 94.0% 78.6%
3744190 220.1.1.43 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SIN1_PH 0.56 47.0 4.24e-01 96.4% 81.7%
3992152 220.1.1.5 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.55 46.0 3.90e-01 97.6% 80.7%
3517079 220.1.1.47 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_16 0.55 45.0 3.89e-01 96.4% 75.9%
4303134 220.1.1.191 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF28624 0.54 45.0 3.73e-01 94.0% 76.1%
4018795 220.1.1.43 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SIN1_PH 0.54 45.0 4.04e-01 96.4% 78.2%
3919311 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.54 45.0 3.99e-01 95.2% 85.6%
3214387 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 46.0 4.50e-01 95.2% 98.9%
3791314 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.54 46.0 3.94e-01 96.4% 73.3%
3919705 220.1.1.47 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_16 0.53 44.0 2.88e-01 96.4% 21.8%
3905551 220.1.1.6 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PID,DAB2_SBM 0.53 45.0 3.67e-01 96.4% 68.5%
3627817 220.1.1.47 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_16 0.53 44.0 3.14e-01 96.4% 34.2%
3412704 220.1.1.5 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.53 44.0 3.66e-01 98.8% 81.2%
3996686 220.1.1.47 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_16 0.53 44.0 3.72e-01 96.4% 69.3%
3918879 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 44.0 3.70e-01 95.2% 65.3%
3612244 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 45.0 3.95e-01 95.2% 92.0%
3527300 220.1.1.5 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.53 45.0 3.63e-01 97.6% 78.2%
4332725 295.1.1.2 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › SsgA 0.52 46.0 3.95e-01 96.4% 80.8%
3788003 220.1.1.112 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_10 0.52 44.0 3.72e-01 95.2% 73.8%
3798262 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 43.0 3.68e-01 96.4% 70.0%
3795297 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 46.0 4.13e-01 97.6% 85.1%
3558744 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 44.0 3.87e-01 95.2% 82.4%
3887822 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 43.0 3.82e-01 95.2% 77.6%
3936376 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 43.0 3.86e-01 94.0% 94.2%
5045772 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 42.0 3.91e-01 96.4% 83.5%
3635615 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 42.0 3.39e-01 95.2% 56.2%
3886411 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 43.0 3.73e-01 95.2% 73.3%
3925891 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 43.0 4.28e-01 96.4% 92.2%
3743110 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.51 46.0 4.23e-01 98.8% 84.8%
3196743 220.1.1.4 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.51 44.0 3.89e-01 98.8% 79.5%
3413648 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 42.0 3.61e-01 96.4% 82.8%
3923613 220.1.1.5 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.51 43.0 3.50e-01 96.4% 89.7%
3479701 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 43.0 3.91e-01 96.4% 83.5%
3916003 220.1.1.61 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C_FAK1 0.51 44.0 3.97e-01 96.4% 74.8%
4656099 220.1.1.5 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.51 42.0 3.44e-01 96.4% 67.1%
3734667 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 42.0 3.40e-01 96.4% 58.3%
4550958 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.51 41.0 3.72e-01 88.0% 81.4%
3591998 220.1.1.11 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.50 42.0 3.88e-01 95.2% 93.6%
967 220.1.1.5 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.50 42.0 3.51e-01 96.4% 77.6%
3719117 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.50 43.0 2.66e-01 96.4% 19.3%
3938388 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 40.0 2.35e-01 86.7% 17.5%
3796100 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.50 42.0 3.54e-01 96.4% 65.3%
3519329 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 42.0 3.60e-01 95.2% 87.1%