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OM046629.1__UNA06034.1__vBYenM3014_039__00039

Bact-Vir

OM046629.1__UNA06034.1__vBYenM3014_039__00039

Identity

Accession:
OM046629 ↗
Kingdom:
phage

Quality

83.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Yersinia_phage_vB_YenM_30.14

TaxID: 2918925

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-73
PDB
Domain cluster: rep: MK798142.1__QDH45660.1__AAM22_gp85__00085__D6-74
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4jz8B00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.63 46.0 2.96e-01 77.1% 40.2%
3uoxB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.63 51.0 3.38e-01 88.6% 93.6%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.59 41.0 3.53e-01 72.9% 72.6%
2oikA00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.58 49.0 3.86e-01 91.4% 86.3%
2p92A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.57 41.0 3.73e-01 75.7% 57.9%
4qmfD02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.53 36.0 3.28e-01 85.7% 53.3%
6jy1A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 45.0 3.61e-01 92.9% 69.2%
4i98C01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 37.0 3.67e-01 100.0% 70.7%
4kn7D01 1.10.132.30 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain 0.50 40.0 3.22e-01 84.3% 51.1%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3521467 3016.1.1.21 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › PDXDC1-like_cen 0.73 49.0 4.51e-01 70.0% 55.6%
3868720 101.1.1.516 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HU-CCDC81_euk_2 0.61 40.0 4.65e-01 94.3% 94.0%
3314731 3887.2.1.1 ↗ a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung 0.59 41.0 3.59e-01 88.6% 47.6%
3210590 304.160.1.3 ↗ a+b two layers › Alpha-beta plaits › Gas vesicle protein GvpF › Gas vesicle protein GvpF › PF28298 0.59 41.0 3.27e-01 72.9% 68.9%
3611854 2484.1.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.57 40.0 2.89e-01 72.9% 64.9%
3718433 304.112.1.0 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.57 41.0 3.05e-01 78.6% 29.2%
3641171 3016.1.1.12 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Alliinase_C 0.56 44.0 3.70e-01 84.3% 78.3%
3270655 5001.1.1.5 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 0.54 42.0 2.85e-01 84.3% 29.4%
3222775 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.53 43.0 2.85e-01 91.4% 23.1%
5034659 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.52 38.0 3.64e-01 100.0% 65.9%
4796697 101.1.2.55 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.50 37.0 3.54e-01 100.0% 66.7%
4990436 101.1.2.109 ↗ alpha arrays › HTH › HTH › winged helix domain › Rio2_N 0.50 32.0 3.21e-01 72.9% 61.3%