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OM055665.1__UKL15215.1__X__00008
Bact-VirOM055665.1__UKL15215.1__X__00008
Identity
- Accession:
- OM055665 ↗
- Kingdom:
- phage
Quality
87.3
mean pLDDT
Taxonomy
Sangervirae›
Phixviricota›
Malgrandaviricetes›
Petitvirales›
Microviridae›
Vibrio_phage_vB_VpaM_PG19
TaxID: 2914022
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-56
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ixjA01 | 3.30.1300.80 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.75 | 49.0 | 4.34e-01 | 70.9% | 48.1% |
| 1fcqA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.72 | 49.0 | 3.02e-01 | 70.9% | 29.9% |
| 5oklA01 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.72 | 58.0 | 4.69e-01 | 87.3% | 100.0% |
| 3lcnB00 | 1.10.340.40 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain | 0.69 | 51.0 | 4.19e-01 | 78.2% | 73.2% |
| 1ctfA00 | 3.30.1390.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS | 0.67 | 54.0 | 5.03e-01 | 87.3% | 76.5% |
| 1uyvB02 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.67 | 46.0 | 2.89e-01 | 72.7% | 20.3% |
| 1ad6A00 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.66 | 48.0 | 3.32e-01 | 76.4% | 55.1% |
| 1cm0A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.66 | 51.0 | 3.73e-01 | 87.3% | 58.0% |
| 3k9dA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.64 | 53.0 | 3.55e-01 | 100.0% | 59.3% |
| 6h7bA01 | 1.10.1900.10 | Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › c-terminal domain of poly(a) binding protein | 0.64 | 47.0 | 4.29e-01 | 80.0% | 66.2% |
| 3tjmA02 | 1.10.1470.20 | Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › Fatty acid synthase; domain 2 | 0.63 | 46.0 | 3.98e-01 | 80.0% | 88.9% |
| 1nrwA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.62 | 49.0 | 3.63e-01 | 83.6% | 71.5% |
| 3ezqA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.60 | 51.0 | 4.13e-01 | 100.0% | 59.1% |
| 4g6dB02 | 6.10.140.1800 | Special › Helix non-globular › Helix Hairpins › | 0.59 | 43.0 | 3.74e-01 | 76.4% | 53.1% |
| 2qvwA04 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.58 | 45.0 | 3.50e-01 | 92.7% | 87.6% |
| 2a5yB01 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.58 | 46.0 | 3.84e-01 | 94.5% | 67.0% |
| 3me5A01 | 1.10.260.140 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › | 0.57 | 47.0 | 4.51e-01 | 98.2% | 82.8% |
| 3p2mA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.57 | 49.0 | 3.07e-01 | 94.5% | 60.5% |
| 3hduA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.56 | 39.0 | 2.88e-01 | 72.7% | 42.1% |
| 4i8oA03 | 1.10.8.1130 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Bacterial toxin RNase RnlA/LsoA, C-terminal Dmd-binding domain | 0.54 | 42.0 | 3.99e-01 | 96.4% | 73.1% |
| 4qgpB00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.52 | 36.0 | 3.01e-01 | 74.5% | 57.9% |
| 1vfiA00 | 1.10.246.100 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Vanadium-binding protein 2 | 0.51 | 36.0 | 3.13e-01 | 78.2% | 90.5% |
| 3v5uA01 | 6.10.280.80 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › NCX, peripheral helical region | 0.50 | 37.0 | 3.39e-01 | 81.8% | 63.2% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3611246 | 7579.1.1.59 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › LIDHydrolase | 0.82 | 62.0 | 3.81e-01 | 81.8% | 15.9% |
| 3594619 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.75 | 51.0 | 5.37e-01 | 70.9% | 78.0% |
| 4018586 | 7579.1.1.59 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › LIDHydrolase | 0.74 | 56.0 | 3.37e-01 | 81.8% | 14.0% |
| 4182238 | 308.1.1.2 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS | 0.71 | 56.0 | 4.89e-01 | 87.3% | 70.6% |
| 4441776 | 308.1.1.2 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS | 0.70 | 56.0 | 4.88e-01 | 87.3% | 72.3% |
| 3740127 | 308.1.1.2 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS | 0.70 | 56.0 | 4.95e-01 | 87.3% | 73.8% |
| 4560916 | 2002.1.1.68 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_56 | 0.70 | 48.0 | 2.83e-01 | 70.9% | 24.9% |
| 3635557 | 103.1.1.2 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › CUE | 0.69 | 49.0 | 4.80e-01 | 74.5% | 73.3% |
| 4028279 | 308.1.1.2 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS | 0.69 | 54.0 | 4.30e-01 | 87.3% | 52.2% |
| 3264673 | 101.1.2.498 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF25870 | 0.68 | 49.0 | 3.60e-01 | 74.5% | 35.4% |
| 4223134 | 101.8.1.2 ↗ | alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 | 0.65 | 52.0 | 3.79e-01 | 92.7% | 33.9% |
| 3493457 | 3949.1.1.0 ↗ | alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain | 0.63 | 49.0 | 4.76e-01 | 90.9% | 83.1% |
| 4650016 | 3949.1.1.1 ↗ | alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › IPPT | 0.60 | 50.0 | 4.81e-01 | 98.2% | 83.1% |
| 5065426 | 7558.1.1.3 ↗ | a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Lip_A_acyltrans | 0.58 | 48.0 | 3.18e-01 | 100.0% | 95.2% |