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OM105886.1__UJE15714.1__SEA_LIGMA_59__00059

Bact-Vir

OM105886.1__UJE15714.1__SEA_LIGMA_59__00059

Identity

Accession:
OM105886 ↗
Kingdom:
phage

Quality

80.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sourvirus› Gordonia_phage_Ligma

TaxID: 2910925

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 7-105
PDB
Domain cluster: rep: OR253912.1__WNM74954.1__SEA_MOSSROSE_61__00061__D14-85
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24198.2 best DUF7423 54.5 1.90e-14 79.8% 94.4%
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2a9uA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.68 51.0 4.72e-01 79.8% 68.3%
2ehwA00 6.10.140.1220 Special › Helix non-globular › Helix Hairpins › 0.64 44.0 4.22e-01 71.7% 88.7%
1kt1A03 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.60 52.0 4.46e-01 97.0% 60.1%
3n2oA03 1.20.58.930 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 46.0 4.69e-01 84.8% 90.6%
3eabE00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.58 40.0 4.24e-01 70.7% 96.5%
4bwrA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 44.0 2.88e-01 99.0% 17.3%
4iggB02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.58 40.0 3.82e-01 72.7% 79.3%
1hn0A02 1.50.10.100 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase 0.57 50.0 3.43e-01 100.0% 49.2%
7zmgL01 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.57 39.0 4.26e-01 72.7% 85.0%
3ztaA00 1.10.490.130 Mainly Alpha › Orthogonal Bundle › Globin-like › 0.56 45.0 4.06e-01 87.9% 77.7%
2w0gA00 1.20.58.610 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Cdc37, Hsp90 binding domain 0.55 49.0 4.50e-01 100.0% 91.5%
3ismC01 1.25.40.240 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ku, C-terminal domain 0.54 48.0 4.15e-01 100.0% 89.6%
2q24A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 43.0 3.65e-01 90.9% 80.9%
4yvoA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.52 43.0 4.09e-01 99.0% 76.5%
3vkgA15 1.10.8.1220 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.51 34.0 3.54e-01 100.0% 72.3%
4fymF00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 45.0 3.54e-01 99.0% 71.8%
3nrgA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.50 43.0 3.46e-01 100.0% 64.1%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3660 633.10.1.1 ↗ alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like › 23S_rRNA_IVP 0.61 46.0 4.39e-01 77.8% 71.7%
3738327 109.4.1.536 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Mei4 0.61 55.0 4.14e-01 100.0% 78.3%
4309318 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.59 46.0 4.52e-01 82.8% 94.3%
3668432 6026.1.1.0 ↗ alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain 0.59 40.0 3.80e-01 70.7% 59.1%
5050406 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.58 42.0 4.54e-01 75.8% 90.6%
3386456 3718.1.1.0 ↗ alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT 0.58 40.0 4.39e-01 100.0% 90.0%
5070319 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 49.0 4.38e-01 98.0% 95.9%
3462342 6155.1.1.0 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.56 46.0 4.14e-01 88.9% 81.3%
3735874 109.4.1.356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.56 49.0 3.25e-01 100.0% 28.8%
3450523 109.4.1.1286 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_12 0.55 41.0 3.51e-01 97.0% 47.3%
4282858 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 44.0 2.53e-01 90.9% 63.5%
3508752 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 41.0 3.92e-01 96.0% 72.2%
3785926 101.1.15.3 ↗ alpha arrays › HTH › HTH › HAT1, C-terminal domain › HAT1_C_fung 0.51 41.0 4.01e-01 92.9% 85.2%
3280988 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.50 34.0 3.68e-01 70.7% 86.3%
3250598 633.6.1.2 ↗ alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › ACOX 0.50 37.0 3.18e-01 79.8% 46.2%