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OM112209.1__UKL29995.1__X__00025

Bact-Vir

OM112209.1__UKL29995.1__X__00025

Identity

Accession:
OM112209 ↗
Kingdom:
phage

Quality

86.6 mean pLDDT

Taxonomy

TaxID: 2912239

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 37-49_78-144_257-283
PDB
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF10124.16 best Mu-like_gpT 27.7 2.40e-06 89.7% 24.2%
PF25209.3 Phage_capsid_4 31.9 2.40e-07 86.0% 31.6%
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7k0xA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.72 36.0 4.22e-01 85.0% 66.7%
4bfiB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.70 35.0 3.85e-01 91.6% 57.8%
8ediA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.70 37.0 3.76e-01 91.6% 52.9%
2x3gA00 3.30.70.1910 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.70 42.0 4.11e-01 97.2% 55.2%
2nyiA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.69 39.0 4.25e-01 99.1% 66.7%
4i0kA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 36.0 3.81e-01 86.9% 57.9%
1t7vA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 36.0 3.92e-01 93.5% 62.2%
6toaF01 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.66 48.0 4.52e-01 93.5% 62.3%
1ao7B00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 35.0 3.69e-01 86.9% 55.0%
3o4oB03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 39.0 3.89e-01 86.9% 56.9%
4ofyD02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 35.0 3.54e-01 87.9% 51.4%
3tupA02 3.30.70.380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain 0.65 38.0 4.01e-01 100.0% 64.6%
2wngA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 35.0 3.56e-01 87.9% 52.3%
5wl1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 35.0 3.63e-01 93.5% 55.4%
4frwA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 33.0 3.50e-01 86.0% 55.2%
1jw3A00 3.55.10.10 Alpha Beta › 3-Layer(bab) Sandwich › Archease, Possible Chaperone; Chain: A; domain 1 › Archease domain 0.63 38.0 3.51e-01 100.0% 45.7%
1dr9A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 34.0 3.64e-01 93.5% 58.9%
4za1C00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 34.0 3.72e-01 91.6% 63.0%
6ue9L02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 36.0 3.49e-01 92.5% 50.0%
2bkyX00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.62 36.0 3.90e-01 85.0% 68.6%
3f8uD03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 36.0 3.66e-01 89.7% 57.5%
2yweA03 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.61 34.0 3.80e-01 85.0% 69.5%
6ofsA04 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.61 41.0 3.47e-01 94.4% 40.2%
2c42A03 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.60 34.0 2.71e-01 83.2% 27.4%
3zxoA00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.59 34.0 3.25e-01 84.1% 46.4%
6x4tA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 32.0 3.60e-01 92.5% 65.9%
2raaA00 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.59 33.0 2.81e-01 84.1% 32.0%
1y0hB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 34.0 3.54e-01 85.0% 59.2%
6iomB01 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.59 30.0 3.53e-01 86.9% 68.8%
3qkbA00 3.30.110.70 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hypothetical protein apc22750. Chain B 0.58 44.0 4.64e-01 100.0% 91.5%
2rjzA02 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.57 35.0 3.63e-01 93.5% 64.6%
2f7vA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 39.0 3.92e-01 86.9% 68.5%
2rrnA01 3.30.70.2040 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 30.0 3.31e-01 88.8% 62.7%
3o3uN03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 34.0 3.43e-01 91.6% 56.8%
4i6yA02 3.30.70.420 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain 0.57 37.0 3.67e-01 90.7% 62.7%
3pfoA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 43.0 4.08e-01 85.0% 68.0%
4d70A00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.56 30.0 2.67e-01 97.2% 32.5%
5t89X05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 36.0 3.58e-01 85.0% 62.7%
2petA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 36.0 3.51e-01 92.5% 59.5%
1q2lA02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.55 37.0 2.90e-01 94.4% 31.2%
1ekrA00 3.30.70.640 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Molybdopterin cofactor biosynthesis C (MoaC) domain 0.55 43.0 3.95e-01 88.8% 62.9%
4bsjA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 38.0 3.61e-01 86.9% 61.8%
7pwfD02 3.30.1140.32 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain 0.53 30.0 3.34e-01 92.5% 69.7%
4pbdA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 33.0 3.45e-01 84.1% 67.6%
3m05B01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 30.0 3.23e-01 76.6% 64.1%
2c5dC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 30.0 3.06e-01 92.5% 57.7%
4of0A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 36.0 3.42e-01 87.9% 61.3%
4of8A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 28.0 2.90e-01 91.6% 53.4%
2gvhC01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.50 41.0 3.81e-01 87.9% 95.6%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5081698 2485.3.1.18 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 0.85 80.0 5.62e-01 100.0% 84.6%
4890673 2485.3.1.9 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF4043 0.82 78.0 5.24e-01 100.0% 79.7%
3963274 2485.3.1.9 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF4043 0.80 75.0 5.03e-01 100.0% 91.8%
2538948 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.79 74.0 5.23e-01 100.0% 82.3%
2988313 2485.3.1.18 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 0.78 73.0 5.29e-01 100.0% 83.8%
4929755 2485.3.1.18 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 0.77 72.0 5.20e-01 100.0% 81.5%
2989356 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.75 70.0 5.00e-01 100.0% 85.4%
3899648 11.1.1.179 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.75 41.0 4.16e-01 87.9% 54.3%
2651377 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.75 69.0 4.92e-01 100.0% 82.8%
4132858 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.75 41.0 4.18e-01 87.9% 55.2%
3970088 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.75 42.0 4.51e-01 90.7% 63.2%
4313471 2485.3.1.11 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › SrpI-like 0.73 67.0 4.77e-01 100.0% 80.3%
2546181 2485.3.1.13 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp13-like 0.71 64.0 4.56e-01 100.0% 74.6%
3719272 872.3.1.5 a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_2 0.68 42.0 5.02e-01 99.1% 95.7%
3603456 304.8.1.82 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF27325 0.67 39.0 4.27e-01 86.0% 68.9%
3934459 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 37.0 3.88e-01 93.5% 59.0%
3854631 11.1.1.108 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 0.66 35.0 3.57e-01 87.9% 52.4%
4935067 304.126.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C 0.66 34.0 3.81e-01 94.4% 62.4%
4342449 305.1.1.1 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.65 42.0 4.08e-01 93.5% 58.3%
3186484 302.1.1.0 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain 0.65 50.0 5.38e-01 84.1% 97.8%
3902779 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 37.0 3.90e-01 92.5% 62.0%
3961836 11.1.1.214 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Pur_ac_phosph_N 0.64 37.0 3.89e-01 94.4% 62.0%
4962041 304.55.1.0 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains 0.61 44.0 3.55e-01 96.3% 39.5%
4220147 304.126.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C 0.60 33.0 3.69e-01 95.3% 67.1%
3391269 11.1.1.179 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.60 40.0 3.96e-01 87.9% 63.5%
3354506 304.28.1.10 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › Helitron_like_N 0.59 45.0 4.65e-01 97.2% 84.6%
5013821 872.1.1.0 a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like 0.58 45.0 4.35e-01 97.2% 73.3%
5017604 872.3.1.1 a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_1 0.57 43.0 4.68e-01 100.0% 95.6%
4415556 331.10.2.1 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › AdoMet_dc 0.57 48.0 3.82e-01 89.7% 49.0%
3301593 304.8.1.23 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Helitron_like_N 0.57 44.0 4.17e-01 96.3% 67.7%
141279 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.57 44.0 4.12e-01 86.0% 67.2%
3931456 304.42.1.1 a+b two layers › Alpha-beta plaits › Molybdenum cofactor biosynthesis protein C, MoaC › Molybdenum cofactor biosynthesis protein C, MoaC › MoaC 0.57 44.0 3.79e-01 88.8% 51.8%
3705145 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.57 49.0 4.17e-01 96.3% 92.8%
3701983 304.153.1.0 a+b two layers › Alpha-beta plaits › Collagenase G catalytic helper subdomain › Collagenase G catalytic helper subdomain 0.57 46.0 4.00e-01 93.5% 55.4%
3850650 304.8.1.60 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ADGRG2_N 0.56 39.0 3.67e-01 90.7% 59.2%
4082913 304.42.1.1 a+b two layers › Alpha-beta plaits › Molybdenum cofactor biosynthesis protein C, MoaC › Molybdenum cofactor biosynthesis protein C, MoaC › MoaC 0.56 42.0 3.76e-01 88.8% 55.0%
5054179 304.42.1.1 a+b two layers › Alpha-beta plaits › Molybdenum cofactor biosynthesis protein C, MoaC › Molybdenum cofactor biosynthesis protein C, MoaC › MoaC 0.54 42.0 3.83e-01 88.8% 61.4%
2388573 309.1.1.0 a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase 0.54 36.0 3.04e-01 92.5% 39.5%
3753929 11.1.1.290 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ASTN1_2_fn3 0.53 39.0 3.45e-01 85.0% 52.9%
4877694 304.51.1.3 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_assoc 0.52 39.0 3.87e-01 84.1% 73.5%
4257138 11.1.1.581 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Tag1_C 0.52 40.0 3.53e-01 94.4% 56.9%
3403552 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 31.0 2.87e-01 86.9% 45.9%
3543444 11.1.1.108 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 0.51 29.0 2.93e-01 92.5% 55.2%
5012405 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.50 42.0 3.64e-01 89.7% 98.1%
D2 medium residues 145-256_284-300
PDB
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF25209.3 best Phage_capsid_4 36.8 7.40e-09 95.3% 45.0%
PF10124.16 Mu-like_gpT 40.3 3.40e-10 62.8% 24.9%