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OM112210.1__UKL30019.1__X__00020

Bact-Vir

OM112210.1__UKL30019.1__X__00020

Identity

Accession:
OM112210 ↗
Kingdom:
phage

Quality

62.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bacillus_phage_PK2

TaxID: 2912240

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-91
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5trdA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 61.0 6.06e-01 92.6% 76.2%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 59.0 5.42e-01 95.1% 67.0%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 60.0 5.26e-01 100.0% 61.7%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 57.0 5.31e-01 93.8% 68.0%
3l9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 58.0 5.67e-01 93.8% 79.8%
3e97A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 55.0 5.62e-01 92.6% 87.2%
1fpqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 59.0 5.11e-01 96.3% 61.2%
2kpmA01 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.64 53.0 5.46e-01 90.1% 98.7%
1kyzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 51.0 4.80e-01 97.5% 73.8%
1dq3A04 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.61 46.0 4.17e-01 95.1% 57.9%
4ctaA02 3.30.70.2860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 39.0 4.03e-01 97.5% 76.0%
4nmyA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.55 46.0 3.58e-01 96.3% 87.3%
2onlC01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 40.0 3.95e-01 77.8% 72.1%
3o6qA02 3.30.70.2720 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 38.0 3.46e-01 72.8% 84.2%
2yweA03 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.55 36.0 3.60e-01 97.5% 65.9%
2rrnA01 3.30.70.2040 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 38.0 3.77e-01 97.5% 72.3%
2h4pA01 3.30.497.10 Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 0.53 43.0 3.17e-01 93.8% 68.1%
2ab5B01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.53 44.0 3.88e-01 100.0% 60.9%
6wy9B02 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.51 38.0 3.68e-01 100.0% 68.4%
3wx4A00 3.30.70.2770 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 33.0 3.20e-01 72.8% 55.1%
4x28C02 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.51 38.0 3.60e-01 100.0% 65.3%
5dzxA02 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.51 36.0 3.26e-01 87.7% 55.1%
2anrA02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.51 34.0 3.50e-01 76.5% 73.3%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995778 101.1.2.368 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_36 0.87 75.0 7.41e-01 100.0% 87.1%
4669204 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.85 70.0 4.32e-01 100.0% 16.7%
3964741 101.1.2.368 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_36 0.85 73.0 6.74e-01 100.0% 74.0%
5083844 101.1.2.242 ↗ alpha arrays › HTH › HTH › winged helix domain › RepL 0.84 71.0 6.55e-01 100.0% 72.0%
5083571 101.1.2.242 ↗ alpha arrays › HTH › HTH › winged helix domain › RepL 0.84 71.0 6.21e-01 100.0% 63.5%
5083436 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.83 68.0 5.95e-01 100.0% 60.9%
5036041 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.82 68.0 6.43e-01 100.0% 74.7%
4963911 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.82 66.0 5.95e-01 97.5% 64.8%
5078007 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.82 61.0 6.40e-01 95.1% 85.3%
4964147 101.1.2.30 ↗ alpha arrays › HTH › HTH › winged helix domain › TrmB 0.80 64.0 6.04e-01 97.5% 72.6%
5079724 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.77 59.0 5.40e-01 95.1% 62.9%
4478972 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.77 62.0 5.55e-01 95.1% 63.6%
5049103 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.76 64.0 6.60e-01 93.8% 98.7%
4959927 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.75 62.0 4.77e-01 92.6% 41.8%
3738672 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 62.0 6.01e-01 95.1% 82.2%
4446584 101.1.2.55 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.74 59.0 5.93e-01 97.5% 86.3%
5051534 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.73 62.0 4.69e-01 97.5% 40.5%
3228509 101.1.4.12 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › MSC 0.72 62.0 5.24e-01 95.1% 57.8%
3798291 101.1.15.0 ↗ alpha arrays › HTH › HTH › HAT1, C-terminal domain 0.72 55.0 5.29e-01 95.1% 72.2%
4241167 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.72 65.0 5.05e-01 100.0% 48.8%
4666309 101.1.21.0 ↗ alpha arrays › HTH › HTH › HTH in T7 RNA polymerase 0.71 64.0 4.54e-01 98.8% 77.4%
3680635 101.1.2.154 ↗ alpha arrays › HTH › HTH › winged helix domain › CDT1_C 0.71 61.0 5.57e-01 95.1% 72.4%
3979499 101.1.2.8 ↗ alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C 0.70 61.0 5.83e-01 100.0% 82.1%
5023661 101.1.2.30 ↗ alpha arrays › HTH › HTH › winged helix domain › TrmB 0.70 61.0 5.22e-01 100.0% 61.2%
3368421 101.1.2.497 ↗ alpha arrays › HTH › HTH › winged helix domain › PF25874 0.69 58.0 5.06e-01 95.1% 60.0%
3826927 101.1.2.497 ↗ alpha arrays › HTH › HTH › winged helix domain › PF25874 0.68 56.0 5.61e-01 95.1% 88.2%
3337440 101.1.2.497 ↗ alpha arrays › HTH › HTH › winged helix domain › PF25874 0.68 58.0 5.71e-01 95.1% 89.4%
3723823 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 59.0 5.70e-01 95.1% 92.2%
5048954 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 58.0 5.15e-01 95.1% 67.0%
3386835 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 59.0 4.72e-01 100.0% 52.5%
4961794 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 57.0 4.94e-01 96.3% 64.8%
4027193 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 54.0 5.26e-01 93.8% 82.2%
3706721 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 54.0 5.54e-01 98.8% 97.3%
3501318 101.1.2.394 ↗ alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 0.64 57.0 3.65e-01 100.0% 23.8%
3498779 101.1.2.34 ↗ alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding 0.62 52.0 5.20e-01 93.8% 91.8%
3876482 4956.1.1.1 ↗ a+b two layers › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5 0.62 40.0 4.11e-01 74.1% 67.5%
3480455 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 51.0 5.20e-01 93.8% 97.5%
3233808 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 50.0 4.37e-01 95.1% 73.8%
3683636 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.60 44.0 4.50e-01 93.8% 81.8%
4290870 101.1.1.279 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma54_CBD 0.60 53.0 4.27e-01 100.0% 80.0%
3278355 327.16.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system 0.57 38.0 3.90e-01 72.8% 71.8%
4029970 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.54 36.0 3.62e-01 97.5% 67.5%
3410137 4252.1.1.11 ↗ beta barrels › AttH-like › AttH-like › AttH-like › DUF4464 0.54 39.0 3.48e-01 76.5% 92.4%
3984393 101.1.9.88 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Phage_pRha 0.54 39.0 3.64e-01 80.2% 60.0%
4056101 810.1.1.2 ↗ a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT 0.53 39.0 3.57e-01 85.2% 60.0%
5058891 304.19.1.1 ↗ a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha 0.52 38.0 3.77e-01 95.1% 72.9%
4580987 3636.1.1.0 ↗ a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain 0.52 44.0 3.61e-01 97.5% 88.7%
3834564 387.1.5.15 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › SLR1-BP 0.52 30.0 3.65e-01 74.1% 93.9%
3972123 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.52 34.0 3.22e-01 96.3% 53.3%
5041224 306.2.1.0 ↗ a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › C-terminal domain of arginine repressor 0.51 44.0 4.41e-01 97.5% 92.9%
3573006 327.11.2.54 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_PARP14_5 0.51 35.0 3.66e-01 76.5% 77.3%
3885537 327.16.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system 0.51 35.0 3.69e-01 72.8% 81.3%
3728863 70.3.1.1 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.51 43.0 3.50e-01 95.1% 58.1%
3945562 1.1.7.111 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › T6SS_TssF 0.51 41.0 3.65e-01 86.4% 73.0%
3741369 3018.1.1.0 ↗ a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like 0.51 38.0 3.71e-01 84.0% 97.9%
3931023 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.51 41.0 2.91e-01 90.1% 29.2%
4091138 304.24.1.3 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III 0.50 33.0 3.28e-01 96.3% 62.2%
D2 medium residues 150-218
PDB