←Back to structures
OM140653.1__UKL54230.1__vBYenM3117_004__00004
Bact-VirOM140653.1__UKL54230.1__vBYenM3117_004__00004
Identity
- Accession:
- OM140653 ↗
- Kingdom:
- phage
Quality
90.2
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Peduoviridae›
Graikaemvirus›
Yersinia_phage_vB_YenM_31.17
TaxID: 2914028
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-108_269-287
Domain cluster:
rep: ON470620.1__URC10465.1__X__00014__D8-100_259-275
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14491.12 best | DUF4435 | 43.4 | 5.10e-11 | 77.1% | 34.4% |
CATH (86)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1w25A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.70 | 56.0 | 5.25e-01 | 84.7% | 85.8% |
| 7lzaA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.70 | 55.0 | 5.53e-01 | 83.9% | 100.0% |
| 3ktoA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.69 | 55.0 | 5.47e-01 | 84.7% | 98.4% |
| 6ontA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.69 | 55.0 | 5.48e-01 | 84.7% | 98.3% |
| 2qxyA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.67 | 54.0 | 5.46e-01 | 86.4% | 99.2% |
| 1dcfA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.67 | 53.0 | 5.16e-01 | 84.7% | 91.0% |
| 3lufB02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.67 | 55.0 | 5.39e-01 | 87.3% | 97.6% |
| 1ab5A00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.67 | 54.0 | 5.35e-01 | 87.3% | 100.0% |
| 2zayA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.67 | 54.0 | 5.36e-01 | 87.3% | 100.0% |
| 3hv2A00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.66 | 53.0 | 5.08e-01 | 85.6% | 89.0% |
| 3grcA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.66 | 53.0 | 5.19e-01 | 84.7% | 98.4% |
| 2rdmA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.66 | 53.0 | 5.30e-01 | 87.3% | 98.4% |
| 3gl9A00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.66 | 53.0 | 5.35e-01 | 86.4% | 100.0% |
| 3jteA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.66 | 53.0 | 5.24e-01 | 87.3% | 96.0% |
| 1srrC00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.66 | 53.0 | 5.30e-01 | 87.3% | 99.2% |
| 3eodA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.66 | 52.0 | 5.25e-01 | 83.9% | 95.7% |
| 7yosA01 | 3.90.1640.30 | Alpha Beta › Alpha-Beta Complex › inorganic pyrophosphatase (n-terminal core) › | 0.66 | 47.0 | 4.02e-01 | 74.6% | 66.0% |
| 3a0uA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.65 | 52.0 | 5.29e-01 | 84.7% | 99.1% |
| 2jb9B00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.65 | 53.0 | 5.27e-01 | 87.3% | 99.2% |
| 3h5iA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.65 | 52.0 | 5.13e-01 | 84.7% | 96.0% |
| 3lteD00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.65 | 53.0 | 5.30e-01 | 89.0% | 100.0% |
| 4dzzA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.65 | 52.0 | 4.33e-01 | 86.4% | 100.0% |
| 2l82A00 | 3.40.50.11230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.65 | 51.0 | 4.61e-01 | 84.7% | 95.7% |
| 2rjoA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.65 | 51.0 | 4.79e-01 | 85.6% | 89.3% |
| 2q5cA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.65 | 50.0 | 5.36e-01 | 85.6% | 100.0% |
| 5z2xA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.64 | 50.0 | 3.68e-01 | 84.7% | 74.9% |
| 2f7lA03 | 3.40.120.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 | 0.64 | 40.0 | 4.36e-01 | 74.6% | 75.5% |
| 3brqB01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.64 | 50.0 | 4.87e-01 | 84.7% | 90.9% |
| 1gcaA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.63 | 50.0 | 4.67e-01 | 85.6% | 87.2% |
| 3nhmA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.63 | 50.0 | 5.11e-01 | 84.7% | 100.0% |
| 2b4aA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.63 | 50.0 | 5.12e-01 | 86.4% | 99.1% |
| 1dbqA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.62 | 49.0 | 4.70e-01 | 83.9% | 91.8% |
| 2fcjB00 | 3.40.1360.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 › | 0.62 | 50.0 | 5.09e-01 | 86.4% | 89.8% |
| 2pjuA02 | 3.40.50.10660 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PrpR receptor domain-like | 0.62 | 36.0 | 4.05e-01 | 97.5% | 75.0% |
| 2ht1A02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.62 | 49.0 | 4.00e-01 | 100.0% | 44.9% |
| 3mizA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.62 | 49.0 | 4.70e-01 | 84.7% | 91.1% |
| 2h3hA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.61 | 48.0 | 4.51e-01 | 84.7% | 83.8% |
| 3h75A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.61 | 49.0 | 4.19e-01 | 85.6% | 66.1% |
| 7yiyA01 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.61 | 46.0 | 3.68e-01 | 80.5% | 60.2% |
| 4ry8A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.61 | 49.0 | 4.57e-01 | 87.3% | 83.1% |
| 4am8E01 | 3.40.50.1370 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase | 0.60 | 48.0 | 4.27e-01 | 84.7% | 76.0% |
| 2eggB01 | 3.40.50.10860 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 | 0.60 | 49.0 | 4.57e-01 | 88.1% | 89.3% |
| 1pq4A01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.60 | 48.0 | 4.44e-01 | 84.7% | 81.6% |
| 4kxvA02 | 3.40.50.970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | 0.60 | 49.0 | 4.15e-01 | 87.3% | 69.6% |
| 2kpoA00 | 3.40.50.11230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.60 | 47.0 | 4.85e-01 | 84.7% | 92.7% |
| 2z1dA01 | 3.40.50.11750 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HypD, alpha/beta domain 1 | 0.60 | 47.0 | 4.52e-01 | 85.6% | 71.6% |
| 5k9xA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.60 | 54.0 | 4.19e-01 | 100.0% | 64.4% |
| 1i4wA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.59 | 44.0 | 3.55e-01 | 100.0% | 38.1% |
| 1gdhA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.59 | 46.0 | 4.55e-01 | 83.9% | 96.1% |
| 3mfqA01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.59 | 47.0 | 4.46e-01 | 84.7% | 88.7% |
| 5hsgA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.59 | 49.0 | 4.83e-01 | 90.7% | 94.4% |
| 3lrtA02 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.59 | 43.0 | 4.20e-01 | 77.1% | 90.9% |
| 1wcwA01 | 3.40.50.10090 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.58 | 45.0 | 4.51e-01 | 83.9% | 99.2% |
| 2x7jA01 | 3.40.50.970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | 0.58 | 47.0 | 3.98e-01 | 86.4% | 91.8% |
| 3hwwA01 | 3.40.50.970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | 0.58 | 46.0 | 3.85e-01 | 84.7% | 88.2% |
| 3grfA01 | 3.40.50.1370 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase | 0.58 | 45.0 | 4.34e-01 | 84.7% | 71.7% |
| 3mw8A01 | 3.40.50.10090 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.58 | 44.0 | 4.43e-01 | 80.5% | 100.0% |
| 5t3oA02 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.58 | 42.0 | 4.01e-01 | 76.3% | 89.2% |
| 1m6yA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.57 | 41.0 | 3.60e-01 | 99.2% | 48.9% |
| 5ereA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.57 | 42.0 | 4.05e-01 | 78.0% | 86.1% |
| 2gn4B01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.57 | 44.0 | 3.59e-01 | 84.7% | 93.0% |
| 3om0A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.56 | 41.0 | 3.73e-01 | 75.4% | 86.9% |
| 3cq4A02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.56 | 45.0 | 3.64e-01 | 85.6% | 60.7% |
| 4j1qA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.56 | 49.0 | 3.40e-01 | 97.5% | 38.6% |
| 2k2wA00 | 3.40.50.10980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nibrin, BRCT2 domain | 0.56 | 44.0 | 4.59e-01 | 84.7% | 93.7% |
| 3wnvA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.56 | 44.0 | 4.17e-01 | 85.6% | 93.0% |
| 3g88A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 40.0 | 3.19e-01 | 95.8% | 36.8% |
| 1z0sA01 | 3.40.50.10330 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Probable inorganic polyphosphate/atp-NAD kinase; domain 1 | 0.55 | 43.0 | 4.23e-01 | 81.4% | 77.4% |
| 2p11A01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.55 | 43.0 | 4.10e-01 | 85.6% | 100.0% |
| 4toiA01 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.55 | 43.0 | 3.84e-01 | 85.6% | 64.0% |
| 3hh8A02 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.55 | 43.0 | 4.25e-01 | 86.4% | 87.8% |
| 5jo9A00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 48.0 | 3.91e-01 | 100.0% | 67.8% |
| 3o03A00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 48.0 | 3.83e-01 | 100.0% | 63.0% |
| 3bb8A01 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.54 | 42.0 | 3.27e-01 | 85.6% | 47.6% |
| 1vddA03 | 3.40.1360.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 › | 0.54 | 40.0 | 4.40e-01 | 78.8% | 100.0% |
| 3bchA01 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.54 | 43.0 | 3.66e-01 | 85.6% | 60.9% |
| 2h9aA01 | 3.20.20.20 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like | 0.53 | 47.0 | 3.72e-01 | 99.2% | 72.8% |
| 1p5dX03 | 3.40.120.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 | 0.53 | 38.0 | 3.83e-01 | 73.7% | 76.5% |
| 3f6tA03 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.53 | 42.0 | 3.54e-01 | 88.1% | 80.5% |
| 6fwrA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 40.0 | 3.37e-01 | 79.7% | 80.0% |
| 3lyhA00 | 3.40.50.1400 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 37.0 | 3.74e-01 | 73.7% | 89.2% |
| 5by7A02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.52 | 34.0 | 3.22e-01 | 83.9% | 52.7% |
| 3merA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 40.0 | 3.61e-01 | 84.7% | 91.3% |
| 3ispB02 | 3.40.190.290 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › | 0.51 | 43.0 | 3.66e-01 | 89.8% | 88.5% |
| 3uhjC01 | 3.40.50.1970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 38.0 | 3.52e-01 | 78.0% | 77.6% |
| 4pneA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 35.0 | 2.73e-01 | 70.3% | 65.9% |
ECOD (82)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3981354 | 2006.1.3.14 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › DUF4435 | 0.92 | 77.0 | 5.95e-01 | 85.6% | 99.6% |
| 4987302 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.72 | 58.0 | 5.60e-01 | 84.7% | 93.8% |
| 5018335 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.69 | 55.0 | 5.37e-01 | 84.7% | 92.3% |
| 4927745 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.69 | 54.0 | 5.37e-01 | 83.9% | 99.2% |
| 4010336 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.69 | 56.0 | 5.35e-01 | 86.4% | 88.1% |
| 385830 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.69 | 55.0 | 5.21e-01 | 84.7% | 89.1% |
| 4946584 | 2007.1.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like | 0.68 | 54.0 | 5.30e-01 | 84.7% | 96.9% |
| 5018153 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.68 | 56.0 | 5.08e-01 | 87.3% | 79.4% |
| 3985284 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.68 | 54.0 | 5.27e-01 | 85.6% | 90.8% |
| 4929745 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.67 | 53.0 | 5.12e-01 | 84.7% | 90.2% |
| 5045312 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.66 | 53.0 | 5.12e-01 | 84.7% | 90.8% |
| 3662749 | 2007.1.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like | 0.66 | 50.0 | 5.50e-01 | 83.9% | 100.0% |
| 3732437 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.66 | 52.0 | 4.27e-01 | 84.7% | 72.3% |
| 4642315 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.66 | 52.0 | 5.01e-01 | 84.7% | 89.6% |
| 3289878 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.66 | 52.0 | 4.99e-01 | 84.7% | 88.9% |
| 3059030 | 2006.1.2.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases | 0.65 | 47.0 | 4.00e-01 | 74.6% | 65.3% |
| 3254345 | 2007.1.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like | 0.65 | 52.0 | 5.11e-01 | 84.7% | 96.8% |
| 2050795 | 2007.1.10.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › PrpR receptor domain-like › PrpR_N | 0.65 | 43.0 | 4.74e-01 | 72.0% | 86.7% |
| 3981338 | 2007.1.2.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_1 | 0.65 | 54.0 | 5.13e-01 | 89.8% | 94.3% |
| 4127803 | 2007.1.3.16 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › KaiA_N | 0.64 | 51.0 | 4.94e-01 | 84.7% | 93.8% |
| 3958965 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.63 | 39.0 | 3.60e-01 | 99.2% | 47.3% |
| 3253433 | 2007.1.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like | 0.63 | 50.0 | 4.81e-01 | 84.7% | 92.6% |
| 3839371 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.63 | 51.0 | 4.87e-01 | 86.4% | 89.6% |
| 5000624 | 2007.24.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › AtpF-like › AtpF-like › ATP-synt_F | 0.62 | 46.0 | 4.89e-01 | 78.8% | 100.0% |
| 4667111 | 7510.1.1.0 ↗ | a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like | 0.62 | 49.0 | 4.63e-01 | 85.6% | 91.0% |
| 3980542 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.62 | 49.0 | 4.52e-01 | 83.9% | 78.7% |
| 3688246 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.62 | 50.0 | 4.78e-01 | 88.1% | 96.4% |
| None | — | 0.62 | 42.0 | 3.53e-01 | 95.8% | 41.0% | |
| 4551376 | 2007.1.2.5 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Bmp | 0.62 | 49.0 | 3.63e-01 | 85.6% | 79.9% |
| 5051856 | 7528.1.1.3 ↗ | a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › PGM_PMM_III | 0.61 | 44.0 | 4.35e-01 | 74.6% | 80.0% |
| 3799585 | 7574.1.1.8 ↗ | a/b three-layered sandwiches › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Transket_pyr | 0.61 | 49.0 | 4.19e-01 | 87.3% | 69.2% |
| 4066970 | 2004.1.1.41 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADK | 0.60 | 48.0 | 3.99e-01 | 85.6% | 95.2% |
| 3286890 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.60 | 47.0 | 4.02e-01 | 84.7% | 80.5% |
| 4449371 | 7574.1.1.0 ↗ | a/b three-layered sandwiches › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) | 0.60 | 48.0 | 4.08e-01 | 85.6% | 73.8% |
| 3377324 | 2007.1.3.33 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Receiver_CRE1 | 0.60 | 46.0 | 4.30e-01 | 83.9% | 85.2% |
| 3880854 | 2003.1.5.100 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DUF938 | 0.60 | 45.0 | 3.77e-01 | 99.2% | 45.9% |
| 5035273 | 2007.12.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Beta-D-glucan exohydrolase, C-terminal domain › Beta-D-glucan exohydrolase, C-terminal domain | 0.60 | 45.0 | 4.34e-01 | 81.4% | 84.3% |
| 5063893 | 2003.1.5.209 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF29244 | 0.59 | 40.0 | 3.52e-01 | 99.2% | 45.6% |
| 5024580 | 7515.1.1.6 ↗ | a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Phosphodiest | 0.59 | 45.0 | 3.36e-01 | 81.4% | 42.6% |
| 4108459 | 2003.1.5.23 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_4 | 0.58 | 49.0 | 4.06e-01 | 94.1% | 85.8% |
| 3611285 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.58 | 46.0 | 4.59e-01 | 84.7% | 100.0% |
| 3383505 | 2006.1.3.11 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › TOP6A-Spo11_Toprim | 0.58 | 47.0 | 4.14e-01 | 86.4% | 99.4% |
| 4999505 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.58 | 42.0 | 3.39e-01 | 99.2% | 38.3% |
| 4938630 | 7574.1.1.7 ↗ | a/b three-layered sandwiches › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › TPP_enzyme_N | 0.58 | 46.0 | 4.14e-01 | 86.4% | 80.0% |
| 4162018 | 7574.1.1.7 ↗ | a/b three-layered sandwiches › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › TPP_enzyme_N | 0.58 | 46.0 | 3.99e-01 | 84.7% | 87.8% |
| 1005394 | 2007.1.2.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_1 | 0.58 | 42.0 | 4.47e-01 | 77.1% | 98.0% |
| 5077931 | 7515.1.1.6 ↗ | a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Phosphodiest | 0.57 | 46.0 | 3.29e-01 | 88.1% | 41.6% |
| 3704865 | 7568.1.1.0 ↗ | a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain | 0.57 | 43.0 | 3.88e-01 | 78.8% | 56.4% |
| None | — | 0.57 | 41.0 | 3.16e-01 | 100.0% | 32.3% | |
| 3955326 | 7574.1.1.7 ↗ | a/b three-layered sandwiches › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › TPP_enzyme_N | 0.57 | 45.0 | 4.01e-01 | 86.4% | 77.8% |
| 4969233 | 2007.1.3.73 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › DUF2325 | 0.57 | 45.0 | 4.81e-01 | 87.3% | 100.0% |
| 3253744 | 7573.1.1.9 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran, Pribosyl_synth | 0.57 | 41.0 | 3.72e-01 | 76.3% | 81.2% |
| 4957145 | 2006.1.3.11 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › TOP6A-Spo11_Toprim | 0.57 | 47.0 | 4.11e-01 | 89.8% | 100.0% |
| 3484555 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.57 | 43.0 | 3.79e-01 | 80.5% | 85.1% |
| 5000538 | 2006.1.4.3 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › NYN | 0.57 | 43.0 | 4.18e-01 | 81.4% | 98.5% |
| 5051159 | 2003.1.7.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › IF-2B | 0.56 | 42.0 | 3.54e-01 | 78.8% | 81.5% |
| 3973658 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.56 | 39.0 | 3.15e-01 | 98.3% | 34.3% |
| 4021620 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.56 | 44.0 | 4.05e-01 | 84.7% | 64.4% |
| 4936294 | 2007.1.3.73 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › DUF2325 | 0.56 | 44.0 | 4.53e-01 | 84.7% | 93.6% |
| 4620729 | 2003.1.5.46 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS | 0.56 | 43.0 | 3.59e-01 | 83.1% | 78.6% |
| 3327055 | 2007.1.14.6 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › CbiX | 0.56 | 38.0 | 3.68e-01 | 70.3% | 76.4% |
| 4047278 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.56 | 39.0 | 3.55e-01 | 74.6% | 52.1% |
| 4423899 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.55 | 38.0 | 3.53e-01 | 74.6% | 53.5% |
| 3740636 | 2006.1.3.11 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › TOP6A-Spo11_Toprim | 0.55 | 43.0 | 3.91e-01 | 85.6% | 100.0% |
| 3408206 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.55 | 42.0 | 3.84e-01 | 81.4% | 88.1% |
| 4951454 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.55 | 37.0 | 2.90e-01 | 99.2% | 30.2% |
| 5010887 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.55 | 39.0 | 3.57e-01 | 74.6% | 60.6% |
| 3736485 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.55 | 39.0 | 3.55e-01 | 72.9% | 55.6% |
| 3849450 | 7568.1.1.14 ↗ | a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › NIBRIN_BRCT_II | 0.54 | 43.0 | 4.51e-01 | 84.7% | 92.7% |
| 4100838 | 2006.1.3.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › DNA_gyraseB_C,Toprim | 0.54 | 46.0 | 3.80e-01 | 94.1% | 85.3% |
| 4976916 | 2006.1.4.3 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › NYN | 0.54 | 38.0 | 3.85e-01 | 73.7% | 95.0% |
| 4031134 | 2004.1.1.88 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › cobW | 0.54 | 41.0 | 3.48e-01 | 82.2% | 78.1% |
| 4133184 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.54 | 38.0 | 3.54e-01 | 73.7% | 58.7% |
| 3400467 | 7568.1.1.4 ↗ | a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT_2 | 0.54 | 40.0 | 4.25e-01 | 87.3% | 89.5% |
| 4544368 | 4978.1.1.1 ↗ | a/b three-layered sandwiches › a/b domain in AF0625-like proteins › a/b domain in AF0625-like proteins › a/b domain in AF0625-like proteins › tRNA_deacylase | 0.54 | 37.0 | 4.17e-01 | 79.7% | 100.0% |
| 4243850 | 7528.1.1.2 ↗ | a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › PGM_PMM_II | 0.52 | 34.0 | 3.69e-01 | 83.1% | 78.0% |
| 5064209 | 2002.1.1.106 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › GDPD | 0.52 | 45.0 | 3.48e-01 | 93.2% | 45.1% |
| 5003842 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.52 | 41.0 | 3.61e-01 | 84.7% | 82.7% |
| 4023170 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.52 | 37.0 | 3.51e-01 | 75.4% | 58.7% |
| 4209208 | 2007.1.2.17 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › DUF2325 | 0.52 | 39.0 | 4.28e-01 | 87.3% | 100.0% |
| 4637998 | 2007.2.2.7 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Phosphotyrosine protein phosphatases I-like › DUF2325 | 0.51 | 39.0 | 4.27e-01 | 87.3% | 100.0% |
| 4979672 | 2006.1.4.3 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › NYN | 0.50 | 37.0 | 3.76e-01 | 77.1% | 89.5% |
D2
high
residues 110-266
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14491.12 best | DUF4435 | 29.3 | 1.00e-06 | 94.9% | 62.6% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2oznB01 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.57 | 28.0 | 3.61e-01 | 90.4% | 86.3% |
| 7swlB02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.56 | 33.0 | 3.83e-01 | 86.0% | 84.5% |
| 4mnrA02 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.54 | 47.0 | 3.74e-01 | 95.5% | 95.9% |
| 1s1fA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.51 | 39.0 | 2.90e-01 | 79.0% | 61.0% |
| 7lb8B01 | 1.10.3470.10 | Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC | 0.51 | 44.0 | 3.58e-01 | 96.2% | 95.6% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3981354 | 2006.1.3.14 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › DUF4435 | 0.96 | 74.0 | 6.36e-01 | 100.0% | 55.1% |
| 5074340 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.60 | 41.0 | 4.31e-01 | 71.3% | 75.7% |
| 3700655 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.56 | 37.0 | 3.72e-01 | 100.0% | 63.0% |
| 3344083 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.54 | 28.0 | 2.44e-01 | 82.2% | 30.8% |
| 3309169 | 101.1.1.121 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 | 0.54 | 36.0 | 3.95e-01 | 81.5% | 81.5% |
| 4403831 | 1002.1.1.1 ↗ | alpha complex topology › Fluoride ion channel › Fluoride ion channel › Fluoride ion channel › CRCB | 0.54 | 27.0 | 2.99e-01 | 83.4% | 55.5% |
| 4211751 | 1002.1.1.1 ↗ | alpha complex topology › Fluoride ion channel › Fluoride ion channel › Fluoride ion channel › CRCB | 0.52 | 27.0 | 2.97e-01 | 84.1% | 58.4% |
| 4664985 | 1002.1.1.0 ↗ | alpha complex topology › Fluoride ion channel › Fluoride ion channel › Fluoride ion channel | 0.52 | 27.0 | 3.00e-01 | 82.8% | 60.8% |
| 4625218 | 563.1.1.1 ↗ | alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP | 0.52 | 30.0 | 2.93e-01 | 98.1% | 50.0% |
| 1843009 | 3783.1.1.1 ↗ | alpha bundles › Toxin RnlA C-terminal domain › Toxin RnlA C-terminal domain › Toxin RnlA C-terminal domain › RnlA-toxin_DBD | 0.51 | 30.0 | 3.00e-01 | 73.9% | 51.7% |