←Back to structures
OM223115.1__UKL15019.1__hairong_115__00115
Bact-VirOM223115.1__UKL15019.1__hairong_115__00115
Identity
- Accession:
- OM223115 ↗
- Kingdom:
- phage
Quality
83.8
mean pLDDT
Taxonomy
TaxID: 2912595
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-56
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4lizA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.72 | 52.0 | 3.88e-01 | 100.0% | 30.4% |
| 1cfyA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.63 | 47.0 | 3.64e-01 | 100.0% | 33.8% |
| 2avxA00 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.63 | 47.0 | 3.37e-01 | 83.0% | 95.9% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.62 | 55.0 | 3.86e-01 | 100.0% | 47.9% |
| 5lznA00 | 3.10.20.360 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › CKK domain | 0.62 | 38.0 | 3.08e-01 | 100.0% | 28.8% |
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.61 | 47.0 | 4.43e-01 | 100.0% | 69.7% |
| 2hhpA03 | 3.30.70.590 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Poly(A) polymerase predicted RNA binding domain | 0.61 | 51.0 | 3.82e-01 | 100.0% | 88.1% |
| 2d8bA01 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.61 | 50.0 | 3.69e-01 | 92.5% | 58.6% |
| 2h6uA00 | 2.60.40.180 | Mainly Beta › Sandwich › Immunoglobulin-like › Transthyretin/hydroxyisourate hydrolase domain | 0.60 | 47.0 | 3.73e-01 | 100.0% | 41.2% |
| 4bd9B01 | 4.10.410.10 | Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain | 0.59 | 36.0 | 3.60e-01 | 96.2% | 57.4% |
| 5l10B00 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.58 | 44.0 | 3.16e-01 | 84.9% | 95.9% |
| 3buxB03 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.58 | 41.0 | 3.68e-01 | 86.8% | 48.8% |
| 4yhbA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.56 | 46.0 | 3.65e-01 | 100.0% | 62.0% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.56 | 47.0 | 4.03e-01 | 100.0% | 57.6% |
| 1rlhA02 | 3.40.1520.10 | Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1634 › Ta1353-like | 0.56 | 47.0 | 3.92e-01 | 98.1% | 100.0% |
| 2iv2X02 | 3.40.50.740 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 46.0 | 3.01e-01 | 98.1% | 79.5% |
| 3fmwC03 | 3.40.30.120 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › | 0.55 | 39.0 | 3.11e-01 | 75.5% | 56.1% |
| 2pnqA00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.55 | 40.0 | 2.51e-01 | 83.0% | 95.0% |
| 3eipA00 | 3.10.50.20 | Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein | 0.53 | 42.0 | 3.81e-01 | 98.1% | 98.8% |
| 6ovpA00 | 3.30.1050.10 | Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain | 0.53 | 44.0 | 3.55e-01 | 100.0% | 61.0% |
| 7y6oA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 43.0 | 3.59e-01 | 100.0% | 50.5% |
| 1ln0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.53 | 44.0 | 3.81e-01 | 100.0% | 65.2% |
| 6womA02 | 3.30.1360.30 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › GAD-like domain | 0.52 | 39.0 | 3.03e-01 | 86.8% | 52.9% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.52 | 43.0 | 3.70e-01 | 100.0% | 56.4% |
| 4eq3A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 41.0 | 3.31e-01 | 100.0% | 43.5% |
| 4axhA03 | 3.30.1050.10 | Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain | 0.52 | 41.0 | 3.12e-01 | 88.7% | 51.6% |
| 1aalB00 | 4.10.410.10 | Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain | 0.52 | 36.0 | 3.57e-01 | 88.7% | 68.4% |
| 2c00A03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.52 | 38.0 | 3.60e-01 | 100.0% | 64.7% |
| 1iktA00 | 3.30.1050.10 | Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain | 0.51 | 42.0 | 3.44e-01 | 98.1% | 60.0% |
| 2cfuA03 | 3.30.1050.10 | Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain | 0.51 | 40.0 | 3.09e-01 | 88.7% | 51.2% |
| 6q61A00 | 4.10.410.10 | Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain | 0.51 | 36.0 | 3.49e-01 | 88.7% | 66.1% |
| 4x83A03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 40.0 | 3.30e-01 | 100.0% | 47.1% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4515517 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.67 | 50.0 | 4.20e-01 | 79.2% | 88.9% |
| 4448678 | 4.1.1.307 ↗ | beta barrels › SH3 › SH3 › SH3 › PF26132 | 0.67 | 60.0 | 5.30e-01 | 100.0% | 97.3% |
| 4111785 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.66 | 49.0 | 4.07e-01 | 81.1% | 82.1% |
| 5048625 | 224.1.1.0 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like | 0.65 | 46.0 | 3.78e-01 | 100.0% | 40.0% |
| 4974405 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.65 | 48.0 | 4.09e-01 | 81.1% | 86.7% |
| 3999847 | 2007.2.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II | 0.63 | 51.0 | 3.70e-01 | 92.5% | 74.1% |
| 4977317 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.63 | 49.0 | 3.77e-01 | 84.9% | 65.5% |
| 3535929 | 386.1.1.248 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_ZNF592 | 0.63 | 46.0 | 3.28e-01 | 100.0% | 24.6% |
| 4947741 | 821.1.1.17 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF27096 | 0.63 | 48.0 | 4.17e-01 | 84.9% | 89.4% |
| 5002747 | 223.1.1.23 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_2 | 0.61 | 47.0 | 3.30e-01 | 86.8% | 90.3% |
| 4946939 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.60 | 44.0 | 3.07e-01 | 100.0% | 22.0% |
| 4004704 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.59 | 42.0 | 4.44e-01 | 100.0% | 95.6% |
| 4345353 | 322.1.1.2 ↗ | a+b two layers › HPr-like › HPr-like › HPr-like › 3H | 0.59 | 49.0 | 3.84e-01 | 96.2% | 91.7% |
| 4026201 | 304.51.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related | 0.59 | 49.0 | 3.60e-01 | 100.0% | 92.9% |
| 3710611 | 2007.2.3.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc | 0.58 | 45.0 | 3.02e-01 | 100.0% | 18.9% |
| 3488019 | 221.1.1.6 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA | 0.58 | 48.0 | 3.64e-01 | 100.0% | 50.7% |
| 3968122 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.58 | 42.0 | 4.33e-01 | 100.0% | 95.6% |
| 1286476 | 223.1.1.3 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF | 0.58 | 45.0 | 3.25e-01 | 86.8% | 95.8% |
| 3969006 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.58 | 43.0 | 4.52e-01 | 100.0% | 97.8% |
| 3734885 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.58 | 46.0 | 2.91e-01 | 100.0% | 15.9% |
| 3958897 | 4187.2.1.0 ↗ | a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 | 0.57 | 41.0 | 3.34e-01 | 100.0% | 36.7% |
| 5029599 | 12.5.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related | 0.57 | 41.0 | 3.24e-01 | 100.0% | 34.4% |
| 3601228 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.55 | 41.0 | 2.73e-01 | 84.9% | 92.3% |
| 3438348 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.55 | 43.0 | 3.92e-01 | 88.7% | 88.0% |
| 3420651 | 109.4.1.1521 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, DYW_deaminase, Eplus_motif, E_motif | 0.55 | 46.0 | 2.85e-01 | 100.0% | 27.1% |
| 3751173 | 4357.1.1.0 ↗ | beta barrels › WWE domain › WWE domain › WWE domain | 0.53 | 43.0 | 4.01e-01 | 100.0% | 100.0% |
| 2402555 | 4020.1.1.1 ↗ | a+b two layers › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › Aminotran_4 | 0.53 | 38.0 | 2.99e-01 | 81.1% | 76.0% |
| 4939739 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.53 | 43.0 | 4.28e-01 | 100.0% | 89.8% |
| 3060384 | 268.1.1.1 ↗ | a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › SCP2 | 0.53 | 43.0 | 3.43e-01 | 98.1% | 56.1% |
| 3501168 | 304.113.1.1 ↗ | a+b two layers › Alpha-beta plaits › Alpha subunit of glutamate synthase, insertion domain › Alpha subunit of glutamate synthase, insertion domain › GATase_2 | 0.52 | 40.0 | 3.38e-01 | 90.6% | 96.2% |
| 3933562 | 4357.1.1.3 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE_2 | 0.52 | 43.0 | 3.10e-01 | 100.0% | 90.2% |
| 4945301 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 37.0 | 2.85e-01 | 83.0% | 53.3% |
| 3405565 | 221.1.1.6 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA | 0.51 | 42.0 | 3.62e-01 | 100.0% | 77.9% |
| 3551231 | 221.1.1.87 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N_2 | 0.51 | 39.0 | 3.35e-01 | 94.3% | 84.8% |
| 3926176 | 4357.1.1.3 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE_2 | 0.51 | 42.0 | 3.57e-01 | 100.0% | 87.0% |
| 3738599 | 221.1.1.51 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › USP7_C2 | 0.51 | 41.0 | 3.53e-01 | 96.2% | 76.8% |
D2
high
residues 66-154
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3hvnA01 | 3.90.840.10 | Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain | 0.65 | 46.0 | 3.71e-01 | 100.0% | 38.4% |
| 2qbuA02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.63 | 28.0 | 2.79e-01 | 94.4% | 36.5% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.62 | 37.0 | 3.76e-01 | 97.8% | 57.6% |
| 1djsA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 35.0 | 3.38e-01 | 96.6% | 49.0% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.59 | 37.0 | 3.69e-01 | 97.8% | 59.6% |
| 4ksnA00 | 6.20.250.80 | Special › Other non-globular › Double Stranded RNA Binding Domain › | 0.56 | 38.0 | 4.23e-01 | 100.0% | 93.8% |
| 4d0qA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.54 | 37.0 | 3.09e-01 | 98.9% | 39.1% |
| 5lp7E01 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.51 | 40.0 | 3.16e-01 | 87.6% | 87.7% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3413323 | 11.1.1.610 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_DSCAM-DSCAML_C | 0.70 | 41.0 | 3.92e-01 | 100.0% | 48.6% |
| 3285401 | 3986.2.1.0 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd | 0.69 | 41.0 | 4.39e-01 | 96.6% | 69.3% |
| 4954132 | 1137.1.1.1 ↗ | a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase | 0.66 | 28.0 | 2.79e-01 | 92.1% | 35.8% |
| 4394681 | 862.1.1.4 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › RepB_primase | 0.64 | 42.0 | 3.22e-01 | 100.0% | 29.3% |
| 5012895 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.62 | 38.0 | 4.48e-01 | 98.9% | 98.2% |
| 5013194 | 3115.4.1.0 ↗ | a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 | 0.61 | 38.0 | 4.40e-01 | 96.6% | 98.2% |
| 5053865 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.58 | 38.0 | 3.83e-01 | 100.0% | 65.6% |
| 3341380 | 11.10.1.5 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 | 0.57 | 43.0 | 3.63e-01 | 100.0% | 48.0% |
| 4939155 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.57 | 39.0 | 3.60e-01 | 100.0% | 53.8% |
| 3255691 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 37.0 | 3.70e-01 | 96.6% | 65.6% |
| 4962335 | 3115.5.1.1 ↗ | a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB › PaaB | 0.56 | 34.0 | 3.78e-01 | 97.8% | 80.0% |
| 3529236 | 11.1.1.229 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IRK_C | 0.55 | 44.0 | 3.58e-01 | 100.0% | 45.3% |
| 4648475 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.53 | 34.0 | 3.90e-01 | 98.9% | 98.3% |
| 3892842 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.52 | 34.0 | 3.72e-01 | 100.0% | 89.2% |
| 3505201 | 1.1.3.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › UFD1_N1 | 0.51 | 32.0 | 3.85e-01 | 93.3% | 100.0% |
| 3868244 | 11.1.1.29 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG | 0.51 | 33.0 | 3.24e-01 | 94.4% | 60.0% |
| 1421567 | 375.1.1.12 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_S27e | 0.51 | 31.0 | 3.64e-01 | 94.4% | 96.4% |
| 3648714 | 11.2.1.37 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF6598 | 0.50 | 45.0 | 3.93e-01 | 100.0% | 94.8% |
| 3647077 | 2487.1.1.7 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA | 0.50 | 42.0 | 3.20e-01 | 95.5% | 99.6% |
D3
high
residues 172-222_296-417
Domain cluster:
rep: RTP_09252017_15_scaffold_29_prodigal-single.1__X__X__00322__D3-175
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14025.12 best | DUF4241 | 32.6 | 1.20e-07 | 94.2% | 98.4% |
D4
high
residues 224-291
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3q23A03 | 6.10.140.1360 | Special › Helix non-globular › Helix Hairpins › | 0.75 | 52.0 | 5.18e-01 | 73.5% | 69.4% |
| 3euaA02 | 1.10.10.2240 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.66 | 34.0 | 3.56e-01 | 91.2% | 51.6% |
| 3bg2A03 | 1.10.3410.10 | Mainly Alpha › Orthogonal Bundle › putative deoxyguanosinetriphosphate triphosphohydrolase fold › putative deoxyguanosinetriphosphate triphosphohydrolase like domain | 0.66 | 54.0 | 4.77e-01 | 88.2% | 65.6% |
| 6nyyE01 | 1.20.58.760 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Peptidase M41 | 0.63 | 55.0 | 4.16e-01 | 100.0% | 87.9% |
| 4l8iB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.63 | 53.0 | 4.56e-01 | 100.0% | 58.0% |
| 2e5zA01 | 1.10.10.790 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module | 0.63 | 33.0 | 3.56e-01 | 97.1% | 59.3% |
| 3a8tA02 | 1.10.287.890 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain | 0.63 | 48.0 | 4.11e-01 | 82.4% | 82.0% |
| 4w4kA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.62 | 46.0 | 4.35e-01 | 79.4% | 95.1% |
| 4ioeA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.62 | 50.0 | 4.58e-01 | 94.1% | 67.8% |
| 2ce7B03 | 1.20.58.760 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Peptidase M41 | 0.62 | 54.0 | 4.10e-01 | 100.0% | 78.6% |
| 4gzrC00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.60 | 45.0 | 4.71e-01 | 100.0% | 91.8% |
| 7k2tA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.58 | 39.0 | 2.75e-01 | 70.6% | 20.3% |
| 2c5zA00 | 1.10.1740.100 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Set2, Rpb1 interacting domain | 0.58 | 46.0 | 4.23e-01 | 88.2% | 64.5% |
| 3smtA02 | 3.90.1420.10 | Alpha Beta › Alpha-Beta Complex › set domain protein methyltransferase, domain 2 › Rubisco LSMT, substrate-binding domain | 0.57 | 45.0 | 3.49e-01 | 88.2% | 64.0% |
| 1u7lA02 | 1.20.1460.10 | Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 | 0.57 | 50.0 | 3.69e-01 | 100.0% | 80.3% |
| 3rkgA02 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.57 | 45.0 | 3.34e-01 | 85.3% | 59.8% |
| 4abmD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.56 | 48.0 | 4.68e-01 | 95.6% | 100.0% |
| 2osaA00 | 1.10.555.10 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein | 0.56 | 41.0 | 2.99e-01 | 79.4% | 64.8% |
| 3g80A00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.55 | 43.0 | 4.28e-01 | 97.1% | 83.6% |
| 2p4vA01 | 1.10.287.180 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain | 0.55 | 47.0 | 4.59e-01 | 95.6% | 88.2% |
| 3zbhA00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.54 | 47.0 | 4.32e-01 | 98.5% | 76.7% |
| 2wssW01 | 1.10.520.20 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase | 0.53 | 36.0 | 3.33e-01 | 73.5% | 51.6% |
| 3floB00 | 1.10.3200.20 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › DNA Polymerase alpha, zinc finger | 0.52 | 45.0 | 3.36e-01 | 98.5% | 41.7% |
| 3r84B00 | 6.10.280.160 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Mediator of RNA polymerase II transcription subunit 22 | 0.52 | 44.0 | 4.24e-01 | 100.0% | 82.5% |
| 3icxA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.51 | 41.0 | 4.01e-01 | 91.2% | 100.0% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3247392 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.71 | 49.0 | 3.78e-01 | 72.1% | 72.0% |
| 3286525 | 4168.1.1.1 ↗ | alpha duplicates or obligate multimers › HAMP domain › HAMP domain › HAMP domain › HAMP | 0.71 | 45.0 | 4.29e-01 | 82.4% | 55.0% |
| 3401813 | 174.1.1.2 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Jagunal | 0.71 | 49.0 | 3.57e-01 | 72.1% | 49.7% |
| 3606235 | 604.7.1.0 ↗ | alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A | 0.70 | 49.0 | 3.59e-01 | 72.1% | 81.8% |
| 3079134 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.66 | 48.0 | 3.18e-01 | 80.9% | 34.7% |
| 3362557 | 4177.1.1.8 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_3 | 0.65 | 49.0 | 3.49e-01 | 82.4% | 77.6% |
| 3670514 | 4992.1.1.0 ↗ | extended segments › RelB-like › RelB-like › RelB-like | 0.65 | 54.0 | 4.92e-01 | 95.6% | 85.3% |
| 4638067 | 3567.1.1.29 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › OCIA | 0.64 | 58.0 | 5.38e-01 | 100.0% | 98.8% |
| 4511746 | 150.5.1.51 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › WXG100_2 | 0.64 | 57.0 | 4.22e-01 | 100.0% | 97.1% |
| 4442740 | 4070.1.1.1 ↗ | alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M41 | 0.64 | 55.0 | 3.95e-01 | 100.0% | 78.1% |
| 5067204 | 4070.1.1.1 ↗ | alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M41 | 0.64 | 55.0 | 4.09e-01 | 100.0% | 80.5% |
| 3911035 | 4.1.1.12 ↗ | beta barrels › SH3 › SH3 › SH3 › PWWP | 0.63 | 50.0 | 3.94e-01 | 89.7% | 87.1% |
| 1552160 | 4070.1.1.1 ↗ | alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M41 | 0.62 | 54.0 | 3.95e-01 | 100.0% | 71.4% |
| 5001407 | 3646.1.1.1 ↗ | alpha complex topology › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › CbiQ | 0.61 | 52.0 | 3.45e-01 | 98.5% | 27.7% |
| 3552917 | 7022.1.1.1 ↗ | alpha bundles › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein › MBOAT | 0.61 | 46.0 | 3.44e-01 | 89.7% | 30.6% |
| 5063587 | 611.9.1.0 ↗ | alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain | 0.60 | 49.0 | 4.65e-01 | 100.0% | 75.3% |
| 3468013 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.59 | 46.0 | 4.07e-01 | 83.8% | 60.0% |
| 3588291 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.59 | 51.0 | 4.83e-01 | 100.0% | 81.2% |
| 3200559 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.59 | 50.0 | 3.29e-01 | 100.0% | 100.0% |
| 4497185 | 185.1.1.1 ↗ | alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin › Tryp_alpha_amyl | 0.59 | 44.0 | 3.71e-01 | 82.4% | 86.7% |
| 3593203 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.58 | 49.0 | 4.43e-01 | 100.0% | 81.0% |
| 3956415 | 150.5.1.51 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › WXG100_2 | 0.58 | 45.0 | 2.93e-01 | 85.3% | 60.3% |
| 3801856 | 3755.4.1.75 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › PF28572 | 0.57 | 44.0 | 3.20e-01 | 83.8% | 91.3% |
| 3316951 | 4177.1.1.2 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR | 0.56 | 50.0 | 3.46e-01 | 100.0% | 63.5% |
| 3670246 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.56 | 41.0 | 3.96e-01 | 76.5% | 100.0% |
| 4104255 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.56 | 47.0 | 4.09e-01 | 92.6% | 96.2% |
| 3708367 | 192.7.1.4 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Val_tRNA-synt_C | 0.56 | 48.0 | 4.82e-01 | 95.6% | 94.3% |
| 4026896 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.54 | 40.0 | 3.11e-01 | 83.8% | 34.8% |
| 3932729 | 630.1.1.0 ↗ | a+b complex topology › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain | 0.53 | 46.0 | 3.76e-01 | 95.6% | 57.6% |
| 3707005 | 3599.1.1.0 ↗ | alpha superhelices › Mitochondrial malonyl-CoA decarboxylase helical domain › Mitochondrial malonyl-CoA decarboxylase helical domain › Mitochondrial malonyl-CoA decarboxylase helical domain | 0.52 | 45.0 | 3.50e-01 | 97.1% | 73.3% |
| 3270116 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.51 | 44.0 | 4.01e-01 | 98.5% | 71.6% |
| 3723774 | 109.1.1.7 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C_3 | 0.51 | 44.0 | 3.63e-01 | 100.0% | 53.8% |