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OM236514.1__UNY48467.1__rho14_3__00003
Bact-VirOM236514.1__UNY48467.1__rho14_3__00003
Identity
- Accession:
- OM236514 ↗
- Kingdom:
- phage
Quality
86.7
mean pLDDT
Taxonomy
TaxID: 2917162
Cluster
View cluster (5 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 166-370
Domain cluster:
rep: IMGVR_UViG_3300010237_000006-3300010237-Ga0136250_1000002017__D103-269
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF20441.4 best | TerL_nuclease | 138.4 | 4.00e-40 | 100.0% | 71.3% |
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2wbnA00 | 3.30.420.280 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.74 | 61.0 | 6.54e-01 | 100.0% | 98.3% |
| 5m1pB00 | 3.30.420.240 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.74 | 65.0 | 6.78e-01 | 100.0% | 100.0% |
| 3vthA03 | 3.30.420.360 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.72 | 39.0 | 5.13e-01 | 96.6% | 91.6% |
| 3ttcA03 | 3.30.420.360 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.71 | 39.0 | 5.03e-01 | 96.1% | 91.7% |
| 3thxA02 | 3.30.420.110 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › MutS, connector domain | 0.70 | 46.0 | 5.12e-01 | 92.7% | 82.4% |
| 5b1hA02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.70 | 29.0 | 4.03e-01 | 95.6% | 76.5% |
| 5ybwA02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.65 | 28.0 | 3.85e-01 | 95.6% | 78.6% |
| 1wkvA03 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.65 | 28.0 | 3.88e-01 | 95.1% | 79.0% |
| 3k59A01 | 2.40.50.590 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › DNA polymerase B, N domain, beta-barrel | 0.59 | 24.0 | 3.52e-01 | 75.1% | 85.9% |
| 3rn5A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 23.0 | 3.30e-01 | 77.1% | 78.3% |
| 4fkcA01 | 3.40.350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain | 0.57 | 39.0 | 4.57e-01 | 71.7% | 100.0% |
| 1l0wA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 25.0 | 3.37e-01 | 77.1% | 79.2% |
| 1wydA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 24.0 | 3.32e-01 | 78.5% | 78.4% |
| 1f21A00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.55 | 36.0 | 4.14e-01 | 86.3% | 88.8% |
| 5zg8A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 24.0 | 3.30e-01 | 78.5% | 80.4% |
| 3i7fA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 26.0 | 3.20e-01 | 78.0% | 70.3% |
| 1fguB01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 25.0 | 3.44e-01 | 76.6% | 87.6% |
| 4qtpD00 | 3.30.750.24 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain | 0.52 | 29.0 | 3.78e-01 | 86.8% | 96.5% |
| 4l5rC02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 21.0 | 3.07e-01 | 91.7% | 82.0% |
| 2ehgA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.51 | 35.0 | 3.98e-01 | 86.3% | 94.0% |
| 2p1zB00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 30.0 | 3.33e-01 | 75.1% | 71.3% |
| 2iyeA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.50 | 33.0 | 3.70e-01 | 92.2% | 84.7% |
| 3ig4A01 | 3.40.350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain | 0.50 | 40.0 | 4.31e-01 | 87.8% | 98.8% |
| 2wnsA00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.50 | 33.0 | 3.36e-01 | 75.1% | 67.5% |
ECOD (53)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4031863 | 2484.1.1.86 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TerL_nuclease | 0.96 | 94.0 | 9.00e-01 | 100.0% | 91.7% |
| 3947877 | 2484.1.1.86 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TerL_nuclease | 0.95 | 93.0 | 9.28e-01 | 100.0% | 97.6% |
| 4033330 | 2484.1.1.86 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TerL_nuclease | 0.94 | 92.0 | 9.01e-01 | 100.0% | 94.9% |
| 4010072 | 2484.1.1.86 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TerL_nuclease | 0.93 | 91.0 | 8.53e-01 | 100.0% | 90.4% |
| 2755869 | 2484.1.1.86 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TerL_nuclease | 0.93 | 90.0 | 8.76e-01 | 99.5% | 91.9% |
| 3590721 | 2484.1.1.86 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TerL_nuclease | 0.93 | 89.0 | 8.81e-01 | 100.0% | 96.2% |
| 3587035 | 2484.1.1.86 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TerL_nuclease | 0.91 | 87.0 | 8.62e-01 | 100.0% | 96.7% |
| 5083931 | 2484.1.1.77 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C | 0.86 | 70.0 | 7.59e-01 | 100.0% | 98.9% |
| 5031041 | 2484.1.1.77 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C | 0.82 | 71.0 | 7.34e-01 | 100.0% | 94.4% |
| 4975081 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.81 | 60.0 | 6.84e-01 | 95.1% | 100.0% |
| 4974990 | 2484.1.1.77 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C | 0.79 | 64.0 | 6.89e-01 | 100.0% | 97.1% |
| 4972935 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.79 | 63.0 | 6.78e-01 | 100.0% | 94.4% |
| 4975080 | 2484.1.1.77 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C | 0.79 | 63.0 | 6.70e-01 | 100.0% | 91.9% |
| 5081671 | 2484.1.1.76 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_3C | 0.78 | 64.0 | 6.78e-01 | 100.0% | 95.6% |
| 5031052 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.77 | 73.0 | 7.33e-01 | 100.0% | 97.6% |
| 5002634 | 2484.1.1.77 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C | 0.76 | 63.0 | 6.77e-01 | 100.0% | 97.8% |
| 4034552 | 2484.1.1.76 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_3C | 0.76 | 61.0 | 6.56e-01 | 100.0% | 96.6% |
| 4988089 | 2484.1.1.77 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C | 0.75 | 66.0 | 6.90e-01 | 100.0% | 98.9% |
| 4995715 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.75 | 72.0 | 6.59e-01 | 100.0% | 95.7% |
| 4367636 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.74 | 46.0 | 5.12e-01 | 93.7% | 77.0% |
| 5082827 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.74 | 66.0 | 6.61e-01 | 100.0% | 91.9% |
| 5041440 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.73 | 70.0 | 6.95e-01 | 100.0% | 97.1% |
| 4936004 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.73 | 46.0 | 5.16e-01 | 93.7% | 78.2% |
| 1949055 | 2484.1.1.77 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C | 0.73 | 63.0 | 6.60e-01 | 100.0% | 97.4% |
| 4559426 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.72 | 44.0 | 4.96e-01 | 93.2% | 77.5% |
| 4352731 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.72 | 44.0 | 4.88e-01 | 93.7% | 74.1% |
| 4124429 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.71 | 44.0 | 4.91e-01 | 93.2% | 76.4% |
| 3232231 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.71 | 47.0 | 4.91e-01 | 92.7% | 72.4% |
| 3645277 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.71 | 46.0 | 4.99e-01 | 93.2% | 76.6% |
| 3486799 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.70 | 47.0 | 4.97e-01 | 93.2% | 76.1% |
| 4250365 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.69 | 43.0 | 4.70e-01 | 93.7% | 72.6% |
| 3172513 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.69 | 46.0 | 5.05e-01 | 93.2% | 81.2% |
| None | — | 0.67 | 47.0 | 3.09e-01 | 93.2% | 18.2% | |
| 3839150 | 2484.1.1.80 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HypF_C | 0.67 | 37.0 | 4.92e-01 | 72.2% | 100.0% |
| 3628473 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.66 | 44.0 | 4.86e-01 | 93.7% | 81.8% |
| 5052285 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.66 | 30.0 | 4.04e-01 | 93.7% | 81.0% |
| 3408448 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.65 | 48.0 | 4.82e-01 | 93.2% | 74.6% |
| 4190886 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.64 | 43.0 | 4.53e-01 | 93.7% | 74.1% |
| 3478602 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.63 | 46.0 | 4.61e-01 | 93.2% | 74.1% |
| 3514373 | 2484.1.1.80 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HypF_C | 0.59 | 35.0 | 4.36e-01 | 73.2% | 93.8% |
| 3934027 | 2484.1.1.4 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H | 0.59 | 41.0 | 4.35e-01 | 71.2% | 88.6% |
| 4982246 | 3521.1.1.0 ↗ | a+b three layers › Polymerase basic protein 2 cap-binding domain › Polymerase basic protein 2 cap-binding domain › Polymerase basic protein 2 cap-binding domain | 0.58 | 24.0 | 3.44e-01 | 71.2% | 79.0% |
| 5069792 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.58 | 27.0 | 3.45e-01 | 93.2% | 74.8% |
| 4032398 | 2484.1.1.67 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 | 0.57 | 34.0 | 4.26e-01 | 86.8% | 93.8% |
| 3266685 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.56 | 50.0 | 3.05e-01 | 93.2% | 30.7% |
| 5081609 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.56 | 26.0 | 3.42e-01 | 77.6% | 77.3% |
| 4612839 | 2484.1.1.4 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H | 0.55 | 36.0 | 4.16e-01 | 87.3% | 88.4% |
| 4639740 | 2484.1.1.4 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H | 0.55 | 36.0 | 4.17e-01 | 87.3% | 89.5% |
| 3966848 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.54 | 36.0 | 4.24e-01 | 87.3% | 93.8% |
| 5074502 | 231.1.4.2 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › Apc (acetophenone carboxylase) beta subunit middle domain › DUF2070 | 0.54 | 30.0 | 3.95e-01 | 94.6% | 97.4% |
| 1314498 | 2496.1.1.2 ↗ | a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like › STAS | 0.51 | 29.0 | 3.73e-01 | 87.8% | 96.6% |
| 165511 | 2484.1.1.67 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 | 0.51 | 35.0 | 3.98e-01 | 86.3% | 94.0% |
| 4046363 | 2484.1.1.4 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H | 0.51 | 34.0 | 3.87e-01 | 87.3% | 88.1% |
D2
medium
residues 2-152
Domain cluster:
rep: KX578043.1__AOT27930.1__X__00015__D87-267
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03354.22 best | TerL_ATPase | 44.8 | 1.60e-11 | 52.3% | 41.0% |
| PF20441.4 | TerL_nuclease | 34.6 | 1.70e-08 | 43.0% | 21.3% |