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OM236515.1__UNY48545.1__spr_24__00024

Bact-Vir

OM236515.1__UNY48545.1__spr_24__00024

Identity

Accession:
OM236515 ↗
Kingdom:
phage

Quality

78.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Spbetavirus› Bacillus_phage_SPR

TaxID: 10725

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-45
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23491.2 best bPH_8 42.6 5.70e-11 100.0% 45.1%
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cs7A00 3.10.50.90 Alpha Beta › Roll › Chitinase A; domain 3 › 0.71 48.0 4.41e-01 70.0% 56.4%
4npsA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 48.0 4.33e-01 75.0% 69.0%
5tkwA02 3.30.420.370 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain 0.68 47.0 4.08e-01 75.0% 75.8%
4cbvA02 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.67 47.0 3.37e-01 72.5% 56.8%
3k0xA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 50.0 3.89e-01 92.5% 65.7%
4qpiB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.60 40.0 2.62e-01 87.5% 13.4%
3h5aD01 3.90.930.70 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.57 44.0 3.66e-01 100.0% 85.2%
1b35B00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.56 42.0 2.63e-01 90.0% 12.9%
2yyzA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.56 39.0 3.64e-01 80.0% 81.0%
4b3xA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 41.0 2.77e-01 82.5% 73.3%
1nztA01 3.30.230.20 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › lpxc deacetylase, domain 1 0.53 38.0 2.86e-01 82.5% 30.3%
3ssoA01 3.30.1050.30 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › 0.53 37.0 2.51e-01 75.0% 33.8%
3qthB00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.53 41.0 2.90e-01 100.0% 46.3%
7c2xA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.52 37.0 2.46e-01 100.0% 20.3%
2egeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 36.0 3.06e-01 72.5% 41.3%
1xjcA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 37.0 2.65e-01 85.0% 38.9%
3a27A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 37.0 2.46e-01 90.0% 24.7%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4214812 4.8.1.26 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › bPH_8 0.80 66.0 5.10e-01 92.5% 55.7%
5005252 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 51.0 4.99e-01 75.0% 64.4%
4149821 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 52.0 4.63e-01 82.5% 51.7%
4276957 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.72 50.0 4.57e-01 72.5% 52.7%
5034646 4.6.1.4 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › DUF5749 0.71 49.0 4.00e-01 75.0% 37.5%
4104821 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 54.0 4.45e-01 92.5% 45.3%
4126797 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.70 48.0 4.33e-01 75.0% 48.3%
3604145 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 54.0 4.80e-01 87.5% 63.3%
4953054 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 57.0 4.71e-01 97.5% 57.3%
3656580 109.4.1.189 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 0.68 49.0 3.25e-01 80.0% 57.7%
5001903 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 52.0 4.45e-01 90.0% 55.7%
4580252 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.65 43.0 3.98e-01 80.0% 50.9%
5062443 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 48.0 3.85e-01 85.0% 72.9%
3959698 2487.1.1.0 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.59 46.0 3.23e-01 97.5% 80.6%
3636970 4955.1.1.0 ↗ a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.56 44.0 3.29e-01 90.0% 90.9%
5070280 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 39.0 3.04e-01 90.0% 35.8%
5039815 2003.1.5.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Met_10 0.52 37.0 2.36e-01 85.0% 83.9%
3464207 377.2.1.4 ↗ few secondary structure elements › Glucocorticoid receptor-like › C-terminal, Zn-finger domain of MutM-like DNA repair proteins › C-terminal, Zn-finger domain of MutM-like DNA repair proteins › Fpg-like_C 0.51 34.0 3.42e-01 70.0% 67.5%
3222494 209.1.1.0 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like 0.51 39.0 2.78e-01 100.0% 26.9%