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OM236515.1__UNY48656.1__spr_135__00135

Bact-Vir

OM236515.1__UNY48656.1__spr_135__00135

Identity

Accession:
OM236515 ↗
Kingdom:
phage

Quality

91.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-49
PDB
Domain cluster: representative
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2km1A00 3.40.50.11000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Fe-S cluster assembly protein Dre2, N-terminal domain 0.66 49.0 3.61e-01 95.3% 29.9%
3o2pE00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 50.0 4.18e-01 90.7% 61.6%
1zarA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 50.0 4.17e-01 93.0% 56.2%
2doaA00 1.10.10.2670 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › E3 ubiquitin-protein ligase 0.65 52.0 4.11e-01 97.7% 70.2%
2cxiA03 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.65 52.0 4.63e-01 100.0% 67.1%
2l4mA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 50.0 4.42e-01 90.7% 66.7%
4b8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 50.0 3.71e-01 97.7% 39.3%
1eluA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.63 54.0 3.99e-01 100.0% 60.0%
2cw7A02 1.10.10.1010 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Intein homing endonuclease, domain IV 0.63 54.0 3.78e-01 100.0% 63.0%
2a61B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 48.0 3.55e-01 95.3% 38.7%
1g8jB00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.62 50.0 3.75e-01 100.0% 99.2%
3bjoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 50.0 3.90e-01 95.3% 39.8%
2hrvA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 43.0 4.37e-01 100.0% 75.0%
3bwgB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 48.0 4.36e-01 100.0% 72.5%
5tjjA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 48.0 4.29e-01 97.7% 72.6%
2do7A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 49.0 4.15e-01 95.3% 70.0%
4ne4A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.61 47.0 3.31e-01 95.3% 65.9%
2d5wA03 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.61 50.0 3.09e-01 93.0% 32.7%
2d1hB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 46.0 3.79e-01 95.3% 51.0%
4ad9A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 46.0 3.95e-01 95.3% 67.9%
4kmfA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 45.0 4.18e-01 90.7% 77.4%
3if4A01 2.20.20.40 Mainly Beta › Single Sheet › Anthopleurin-A › Integron cassette protein 0.60 48.0 4.64e-01 100.0% 76.0%
2hr3D02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 44.0 4.15e-01 90.7% 74.2%
5bpdD01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 44.0 3.94e-01 90.7% 64.0%
1qbjC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 45.0 4.13e-01 95.3% 72.7%
5yxkA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 48.0 3.72e-01 100.0% 61.8%
1khmA00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.59 49.0 4.00e-01 100.0% 56.2%
5ck3C00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.58 46.0 3.57e-01 93.0% 93.3%
1cvsC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 48.0 3.80e-01 100.0% 49.5%
1f97A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 46.0 3.64e-01 100.0% 50.5%
4tv7D01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 48.0 3.94e-01 100.0% 58.8%
7uvpA02 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.57 47.0 4.11e-01 97.7% 66.7%
3fx3B02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 42.0 3.60e-01 100.0% 50.5%
3ezjA03 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.56 44.0 4.15e-01 100.0% 72.7%
6do0A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 45.0 3.58e-01 97.7% 60.0%
6grsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 49.0 3.79e-01 100.0% 45.3%
2anrA02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.55 46.0 3.97e-01 100.0% 69.3%
3rq4A02 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.55 41.0 3.08e-01 100.0% 28.2%
6lpwB01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.55 46.0 3.07e-01 100.0% 36.4%
2dy1A03 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.55 42.0 3.74e-01 100.0% 63.2%
2mtfA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 41.0 3.29e-01 97.7% 44.7%
1go3E02 3.30.1490.120 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase Rpb7-like, N-terminal domain 0.54 44.0 3.74e-01 100.0% 93.8%
1ynjD03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.54 46.0 4.32e-01 97.7% 100.0%
3c7jA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 39.0 3.40e-01 97.7% 51.6%
4lvnP00 3.30.70.2380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 41.0 3.60e-01 100.0% 63.0%
2iepA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 43.0 3.47e-01 100.0% 50.0%
2i4lA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.53 40.0 2.49e-01 100.0% 34.4%
1r8eA02 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.53 41.0 3.67e-01 100.0% 63.0%
4u7mA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 42.0 3.44e-01 100.0% 52.6%
7cboA01 3.30.379.10 Alpha Beta › 2-Layer Sandwich › Chitobiase; domain 2 › Chitobiase/beta-hexosaminidase domain 2-like 0.52 40.0 3.24e-01 100.0% 92.7%
2grvA02 3.90.76.10 Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 0.51 41.0 3.23e-01 100.0% 57.5%
1u02A02 3.30.70.1020 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trehalose-6-phosphate phosphatase related protein; domain 2 0.51 39.0 3.42e-01 95.3% 93.4%
2o0bA01 3.65.10.10 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain 0.50 41.0 2.73e-01 100.0% 20.6%
4qmfD02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.50 39.0 3.29e-01 100.0% 60.9%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3201104 109.4.1.142 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CSN8_PSD8_EIF3K 0.75 62.0 4.03e-01 95.3% 29.7%
4529661 101.1.2.122 alpha arrays › HTH › HTH › winged helix domain › CSN8_PSD8_EIF3K 0.73 60.0 5.46e-01 95.3% 80.0%
3598910 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 56.0 5.19e-01 95.3% 73.3%
3262224 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.69 54.0 4.74e-01 93.0% 68.6%
3169070 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 56.0 4.63e-01 97.7% 57.6%
3474503 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.68 52.0 3.29e-01 100.0% 15.8%
3251071 101.1.2.503 alpha arrays › HTH › HTH › winged helix domain › PF25875 0.68 56.0 4.61e-01 93.0% 57.5%
3607004 101.1.2.122 alpha arrays › HTH › HTH › winged helix domain › CSN8_PSD8_EIF3K 0.68 53.0 4.63e-01 95.3% 58.7%
3716370 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 56.0 4.63e-01 100.0% 60.0%
3643641 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.67 52.0 4.07e-01 93.0% 46.7%
5078454 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 54.0 4.75e-01 95.3% 68.6%
3306164 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.67 51.0 3.99e-01 93.0% 44.5%
3555844 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.66 51.0 4.56e-01 93.0% 70.0%
4058345 3749.5.1.0 extended segments › 26S proteasome regulatory subunits C-terminal helices › 26S proteasome regulatory subunit RPN3 C-terminal helix › 26S proteasome regulatory subunit RPN3 C-terminal helix 0.66 51.0 3.97e-01 93.0% 44.5%
3874466 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 53.0 4.52e-01 97.7% 60.0%
4932125 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.66 51.0 4.02e-01 93.0% 44.8%
3934491 101.1.2.503 alpha arrays › HTH › HTH › winged helix domain › PF25875 0.66 55.0 4.89e-01 95.3% 73.4%
5007171 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.66 50.0 3.92e-01 93.0% 43.6%
5040212 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.65 49.0 3.89e-01 93.0% 42.7%
4887202 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 52.0 5.06e-01 95.3% 87.8%
3268596 2498.2.1.4 mixed a+b and a/b › Zincin-like › beta-N-acetylhexosaminidase-like domain › beta-N-acetylhexosaminidase-like domain › Glycohydro_20b2 0.65 55.0 3.92e-01 100.0% 83.6%
5051399 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 51.0 4.49e-01 93.0% 67.1%
5002469 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.65 49.0 4.03e-01 93.0% 49.5%
4012954 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 51.0 4.52e-01 95.3% 71.4%
4949305 101.1.2.109 alpha arrays › HTH › HTH › winged helix domain › Rio2_N 0.65 49.0 4.42e-01 93.0% 75.7%
3719106 101.1.2.109 alpha arrays › HTH › HTH › winged helix domain › Rio2_N 0.64 47.0 3.75e-01 90.7% 45.5%
4944035 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 48.0 4.49e-01 90.7% 75.0%
5074714 213.1.1.27 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_7 0.64 46.0 3.57e-01 100.0% 33.3%
3400098 207.1.1.24 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_8 0.63 54.0 3.44e-01 100.0% 20.9%
5010830 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.62 48.0 3.91e-01 95.3% 50.0%
5074567 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 48.0 3.67e-01 95.3% 38.4%
3382295 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.62 48.0 3.75e-01 95.3% 44.5%
4992547 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.62 46.0 3.58e-01 93.0% 39.2%
3604285 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.61 47.0 3.91e-01 97.7% 52.6%
3274016 101.1.2.393 alpha arrays › HTH › HTH › winged helix domain › WH_MCM2 0.61 49.0 4.13e-01 95.3% 62.5%
2456959 101.1.2.69 alpha arrays › HTH › HTH › winged helix domain › La 0.61 47.0 3.95e-01 95.3% 54.4%
3409254 101.1.2.393 alpha arrays › HTH › HTH › winged helix domain › WH_MCM2 0.61 49.0 4.12e-01 95.3% 61.3%
4976749 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 46.0 4.09e-01 95.3% 66.7%
4966124 101.1.2.924 alpha arrays › HTH › HTH › winged helix domain › DUF7342 0.61 46.0 3.34e-01 95.3% 32.9%
4028694 306.3.1.0 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like 0.60 47.0 4.21e-01 100.0% 60.0%
3603159 101.1.2.209 alpha arrays › HTH › HTH › winged helix domain › MJ1010-like_2nd 0.60 47.0 4.21e-01 95.3% 64.3%
3711773 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 46.0 3.95e-01 97.7% 63.5%
3902398 70.3.1.0 beta barrels › beta-clip › SET domain-like › SET domain-like 0.60 45.0 3.49e-01 100.0% 33.9%
5065465 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 45.0 3.67e-01 93.0% 46.9%
3426804 101.1.2.69 alpha arrays › HTH › HTH › winged helix domain › La 0.59 47.0 3.94e-01 95.3% 58.8%
4859443 101.1.2.393 alpha arrays › HTH › HTH › winged helix domain › WH_MCM2 0.59 47.0 3.87e-01 97.7% 46.2%
3595823 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 44.0 3.86e-01 95.3% 62.5%
2800426 327.16.1.3 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin_N 0.56 46.0 4.14e-01 100.0% 66.2%
3464717 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.56 45.0 2.74e-01 97.7% 13.7%
4962256 101.1.2.937 alpha arrays › HTH › HTH › winged helix domain › PF25943 0.56 44.0 3.36e-01 95.3% 36.4%
4953522 327.11.2.13 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_PNO1_2nd 0.55 46.0 3.60e-01 100.0% 57.0%
3496306 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.55 44.0 3.91e-01 100.0% 61.4%
5029541 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.53 47.0 3.68e-01 100.0% 48.9%
3616222 309.1.2.0 a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › ThrRS/AlaRS editing domain 0.53 41.0 2.78e-01 100.0% 21.0%
4943412 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.52 42.0 3.37e-01 100.0% 57.0%
3924895 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 39.0 3.62e-01 88.4% 66.7%