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OM236515.1__UNY48694.1__spr_173__00173

Bact-Vir

OM236515.1__UNY48694.1__spr_173__00173

Identity

Accession:
OM236515 ↗
Kingdom:
phage

Quality

64.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 34-88
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5i7pA02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.71 57.0 5.98e-01 94.5% 100.0%
6baoA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.69 60.0 4.47e-01 100.0% 69.2%
1o9aA01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.69 44.0 4.78e-01 78.2% 81.8%
2cg7A01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.67 48.0 5.13e-01 87.3% 91.3%
1kjzA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.67 56.0 4.75e-01 94.5% 64.1%
2npiA03 2.40.30.330 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Pre-mRNA cleavage complex subunit Clp1, C-terminal domain 0.65 55.0 4.48e-01 94.5% 82.5%
4i1kA00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.64 53.0 4.25e-01 100.0% 44.9%
2zzeA03 2.40.30.130 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.64 51.0 4.30e-01 94.5% 51.0%
3tfiA00 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.64 55.0 3.37e-01 100.0% 40.1%
4bdxA00 2.10.25.10 Mainly Beta › Ribbon › Laminin › Laminin 0.63 43.0 3.78e-01 89.1% 47.0%
3fc7A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.63 53.0 4.50e-01 100.0% 96.0%
4ic6C01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.63 53.0 4.36e-01 100.0% 56.4%
3c8cB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.63 54.0 4.22e-01 100.0% 59.8%
5nahA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.63 51.0 3.09e-01 100.0% 13.6%
1pj5A03 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.62 54.0 3.75e-01 100.0% 33.8%
4paaA03 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.62 53.0 3.75e-01 100.0% 35.4%
4m9fA00 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.59 40.0 2.74e-01 90.9% 19.5%
6e4nA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.58 45.0 4.18e-01 98.2% 66.2%
3md7A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.58 48.0 3.12e-01 94.5% 97.4%
3zn6A02 2.60.40.3410 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 49.0 4.29e-01 100.0% 71.3%
7qddB01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.57 42.0 3.91e-01 96.4% 61.6%
4k22A02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.57 42.0 3.52e-01 85.5% 48.1%
2xdoD00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 46.0 2.89e-01 100.0% 50.8%
1fo0B00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 47.0 3.86e-01 100.0% 62.5%
3tixB01 2.40.290.20 Mainly Beta › Beta Barrel › Ku70; Chain: A; Domain 2 › 0.55 45.0 3.49e-01 100.0% 45.9%
7szeB01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.55 38.0 3.23e-01 78.2% 39.3%
2g3mF01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.55 45.0 3.42e-01 100.0% 63.2%
1z01A02 2.20.25.680 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.54 45.0 4.44e-01 98.2% 98.4%
3gkeA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.54 44.0 3.52e-01 100.0% 86.2%
1kvzA00 3.10.130.10 Alpha Beta › Roll › P-30 Protein › Ribonuclease A-like domain 0.54 43.0 3.57e-01 92.7% 95.3%
1whvA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.54 38.0 3.26e-01 100.0% 43.0%
2gnxA02 3.30.450.240 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.54 43.0 3.67e-01 100.0% 80.7%
1jdpA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.54 42.0 3.05e-01 92.7% 28.5%
6klsA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.54 38.0 3.28e-01 78.2% 47.9%
3m46A01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.53 42.0 3.28e-01 100.0% 60.4%
2otnB01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.53 42.0 3.16e-01 94.5% 33.6%
1ft9A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 43.0 3.94e-01 100.0% 68.4%
2o8mB01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.52 37.0 3.50e-01 94.5% 62.1%
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.52 34.0 3.00e-01 81.8% 40.4%
1vq0A02 3.90.1280.10 Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like 0.52 37.0 3.75e-01 83.6% 82.5%
5mmjh01 3.30.1370.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.52 39.0 3.63e-01 96.4% 62.7%
1l1dA00 2.170.150.20 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Peptide methionine sulfoxide reductase. 0.52 42.0 3.11e-01 90.9% 60.4%
3vcaA02 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.52 42.0 3.44e-01 100.0% 96.6%
4g41A00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.51 44.0 2.91e-01 98.2% 99.2%
1i94H01 3.30.1370.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.51 38.0 3.49e-01 98.2% 60.3%
5cxmA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.51 34.0 3.01e-01 78.2% 41.4%
8cukB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 36.0 2.35e-01 81.8% 41.6%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4957350 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 56.0 5.28e-01 76.4% 66.2%
4245518 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.75 57.0 5.15e-01 94.5% 60.0%
3224728 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.72 64.0 5.00e-01 100.0% 56.5%
4883459 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.70 58.0 5.21e-01 94.5% 100.0%
2036627 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.68 60.0 5.53e-01 100.0% 77.5%
5069810 1.1.8.4 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.68 57.0 5.02e-01 94.5% 63.7%
5001596 1.1.8.4 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.67 56.0 4.81e-01 94.5% 66.7%
3322961 1.1.15.1 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.67 58.0 5.01e-01 100.0% 73.3%
29093 66.1.1.0 beta sandwiches › ISP domain › ISP domain › ISP domain 0.67 43.0 4.76e-01 76.4% 90.0%
4202831 391.1.1.1 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › fn1 0.67 45.0 4.92e-01 87.3% 86.7%
3505939 270.1.1.1 beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Pur_DNA_glyco 0.67 57.0 4.63e-01 100.0% 58.2%
4945827 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.66 57.0 4.88e-01 98.2% 66.7%
5018347 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.65 52.0 3.86e-01 100.0% 32.9%
4495979 270.1.1.1 beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Pur_DNA_glyco 0.65 55.0 3.84e-01 100.0% 31.5%
4949140 1.1.7.13 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › TrmO 0.64 53.0 4.69e-01 98.2% 67.8%
4974463 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.64 52.0 3.82e-01 100.0% 31.9%
4420094 304.107.1.1 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › GCV_T 0.63 55.0 3.50e-01 100.0% 51.9%
4950268 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.63 54.0 5.33e-01 100.0% 91.7%
2068913 304.107.1.1 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › GCV_T 0.62 54.0 4.09e-01 100.0% 42.8%
3590871 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.62 52.0 3.43e-01 100.0% 31.9%
3422503 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.62 49.0 4.04e-01 100.0% 45.5%
3452625 1.1.7.69 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › MOV-10_beta-barrel 0.62 51.0 4.26e-01 94.5% 54.0%
4947650 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 52.0 4.18e-01 98.2% 72.2%
1171969 66.1.1.2 beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske_2 0.61 39.0 4.21e-01 70.9% 81.8%
3529972 327.16.1.6 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › DTX3L_a-b 0.61 45.0 4.15e-01 96.4% 61.4%
3730905 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.60 51.0 3.76e-01 100.0% 67.5%
4952455 1.1.8.4 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.60 50.0 4.40e-01 100.0% 66.3%
4008034 223.1.1.113 a+b three layers › Profilin-like › sensor domains › sensor domains › PF30408 0.59 48.0 3.59e-01 100.0% 45.9%
3983134 223.1.1.113 a+b three layers › Profilin-like › sensor domains › sensor domains › PF30408 0.59 48.0 4.14e-01 100.0% 75.0%
4928701 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 45.0 3.84e-01 92.7% 85.7%
4977899 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 48.0 3.97e-01 100.0% 61.8%
3687305 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.58 46.0 2.82e-01 96.4% 62.0%
3820521 2004.1.1.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.58 48.0 3.11e-01 100.0% 21.0%
3475962 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.57 42.0 3.56e-01 100.0% 46.3%
3650304 66.1.1.0 beta sandwiches › ISP domain › ISP domain › ISP domain 0.57 39.0 3.90e-01 80.0% 68.3%
3271043 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.57 43.0 3.10e-01 87.3% 94.7%
3291522 304.154.1.0 a+b two layers › Alpha-beta plaits › Regulator of polyketide synthase expression N-terminal domain › Regulator of polyketide synthase expression N-terminal domain 0.57 42.0 3.22e-01 100.0% 31.3%
4947508 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 46.0 3.66e-01 96.4% 64.8%
3734451 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.56 44.0 3.28e-01 96.4% 31.2%
3199271 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.56 44.0 3.57e-01 100.0% 42.5%
5051398 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 46.0 3.68e-01 96.4% 64.2%
4972247 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 45.0 3.62e-01 100.0% 65.4%
5044703 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 45.0 3.65e-01 96.4% 65.0%
3578637 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.55 47.0 3.00e-01 98.2% 72.4%
4961948 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.55 41.0 3.22e-01 100.0% 37.5%
3720390 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.55 45.0 2.71e-01 100.0% 59.6%
5044521 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 44.0 3.52e-01 100.0% 52.6%
4927242 223.2.1.62 a+b three layers › Profilin-like › profilin-like › profilin-like › DUF6659 0.54 44.0 3.61e-01 100.0% 85.7%
3726528 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.54 44.0 2.67e-01 100.0% 57.7%
4390139 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.54 42.0 3.11e-01 94.5% 57.2%
3691605 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.54 43.0 3.46e-01 100.0% 41.5%
3713554 4178.1.1.0 beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain 0.53 37.0 2.60e-01 76.4% 81.5%
3735054 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.53 42.0 3.31e-01 94.5% 73.3%
3597091 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.53 38.0 3.12e-01 81.8% 89.5%
4105291 320.2.1.1 a+b two layers › R3H domain-like › Ribosomal protein S8, N-terminal domain › Ribosomal protein S8, N-terminal domain › Ribosomal_S8 0.53 40.0 3.83e-01 96.4% 72.3%
4583673 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 42.0 2.92e-01 100.0% 32.9%
3722095 223.1.1.21 a+b three layers › Profilin-like › sensor domains › sensor domains › HODM_asu-like 0.52 40.0 2.54e-01 87.3% 83.8%
4935316 268.1.1.1 a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › SCP2 0.52 41.0 3.36e-01 94.5% 44.3%
3413858 70.3.1.0 beta barrels › beta-clip › SET domain-like › SET domain-like 0.52 44.0 2.77e-01 100.0% 79.7%
5065158 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 39.0 3.07e-01 92.7% 90.7%
4926979 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 41.0 3.44e-01 100.0% 85.2%
5077119 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 41.0 3.19e-01 100.0% 54.0%
4193772 331.1.1.13 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › CPSF73-100_C 0.50 43.0 3.81e-01 100.0% 75.3%
3483861 331.1.1.5 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N 0.50 42.0 3.78e-01 98.2% 73.8%
5050119 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.50 40.0 3.52e-01 94.5% 70.0%
3899939 331.1.1.13 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › CPSF73-100_C 0.50 43.0 3.85e-01 100.0% 76.2%