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OM236516.1__UNY48722.1__fado_7__00007

Bact-Vir

OM236516.1__UNY48722.1__fado_7__00007

Identity

Accession:
OM236516 ↗
Kingdom:
phage

Quality

84.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-65
PDB
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vwxS02 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.80 69.0 6.54e-01 93.8% 80.3%
2zw2A00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.80 68.0 6.12e-01 90.6% 100.0%
3egrA00 3.10.20.520 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B 0.77 63.0 6.39e-01 95.3% 88.9%
1vwxS01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.77 70.0 6.77e-01 100.0% 90.1%
1gtdA00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.76 61.0 5.66e-01 87.5% 100.0%
2cuwA00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.75 64.0 5.79e-01 90.6% 100.0%
4a18X01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.75 66.0 6.16e-01 100.0% 78.5%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.73 61.0 5.84e-01 93.8% 80.3%
1o22A00 3.90.1000.10 Alpha Beta › Alpha-Beta Complex › Orphan Protein Tm0875; Chain: A; › Hypothetical protein TM0875 0.72 58.0 4.40e-01 87.5% 100.0%
2dkmA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.70 52.0 4.40e-01 95.3% 48.1%
3tesA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.69 51.0 4.48e-01 95.3% 53.2%
4njcA00 3.10.20.730 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like 0.68 52.0 5.36e-01 93.8% 88.3%
1va9A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 52.0 4.22e-01 95.3% 44.3%
3hvnA01 3.90.840.10 Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain 0.65 53.0 3.95e-01 92.2% 39.0%
1t4aA00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.65 53.0 4.97e-01 90.6% 100.0%
1x5kA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 49.0 4.21e-01 93.8% 51.5%
6s2wA01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.64 52.0 4.78e-01 89.1% 75.6%
2hj1A00 3.10.20.280 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like 0.63 47.0 4.52e-01 87.5% 70.1%
4ushA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 55.0 4.75e-01 100.0% 88.3%
5kfzA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.63 54.0 4.45e-01 100.0% 54.5%
4kcaA03 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.61 49.0 4.26e-01 87.5% 93.8%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.61 46.0 3.43e-01 87.5% 31.7%
2w82A01 3.10.20.480 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Antirestriction protein ArdA, domain 1 0.61 44.0 4.57e-01 92.2% 88.1%
1lxnA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 51.0 4.50e-01 98.4% 96.9%
5is2A01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.60 50.0 4.52e-01 95.3% 92.3%
1j0hA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 48.0 3.93e-01 98.4% 47.2%
2mraA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.57 46.0 3.84e-01 90.6% 49.6%
4dzdA02 3.30.70.1210 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 0.57 46.0 3.70e-01 87.5% 61.8%
2oo3A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 45.0 3.10e-01 92.2% 22.5%
1wzlA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 44.0 3.69e-01 93.8% 47.9%
2nytD00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.55 47.0 3.46e-01 96.9% 72.1%
3n28A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.55 41.0 3.16e-01 81.2% 64.3%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.55 48.0 4.45e-01 100.0% 95.2%
3kg0A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 47.0 4.18e-01 100.0% 94.8%
2bopA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.54 46.0 4.21e-01 96.9% 100.0%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.54 42.0 3.81e-01 87.5% 93.5%
6jptA00 3.30.230.90 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.54 38.0 3.15e-01 75.0% 80.2%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.53 42.0 3.74e-01 87.5% 91.5%
3wnoA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 39.0 3.45e-01 90.6% 53.0%
2zewB00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 41.0 3.18e-01 89.1% 59.2%
2knrA00 3.40.1530.20 Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1805 › Protein of unknown function (DUF1491) 0.51 40.0 3.44e-01 92.2% 51.7%
4wiwA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.51 40.0 3.93e-01 85.9% 100.0%
1rlhA02 3.40.1520.10 Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1634 › Ta1353-like 0.51 37.0 3.27e-01 79.7% 65.3%
6uqjA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.51 40.0 2.60e-01 92.2% 68.7%
5hn3A00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.51 39.0 2.57e-01 89.1% 45.8%
2kyyA00 3.30.950.30 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Schlafen, AAA domain 0.50 38.0 3.06e-01 89.1% 65.4%
ECOD (71)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5030993 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.83 73.0 6.68e-01 93.8% 76.2%
4013514 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.82 73.0 6.07e-01 95.3% 59.0%
4967222 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.82 71.0 7.30e-01 100.0% 98.3%
4937773 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.82 69.0 7.19e-01 89.1% 98.3%
4996552 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.82 72.0 6.45e-01 93.8% 71.8%
4939739 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.82 69.0 7.22e-01 90.6% 98.3%
4128974 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.82 71.0 6.57e-01 93.8% 81.2%
2527501 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.82 71.0 5.96e-01 93.8% 58.7%
4160542 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.82 68.0 7.14e-01 89.1% 98.3%
3345090 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.82 71.0 5.88e-01 93.8% 56.5%
4990637 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.82 71.0 6.47e-01 93.8% 74.7%
1867336 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.82 72.0 7.25e-01 100.0% 95.2%
2106285 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.82 73.0 5.98e-01 95.3% 57.4%
5067865 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.82 71.0 6.92e-01 93.8% 87.1%
5065436 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.81 72.0 7.24e-01 98.4% 95.3%
4943401 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.81 72.0 6.47e-01 95.3% 75.3%
5074648 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.81 71.0 6.68e-01 93.8% 81.3%
4084879 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.81 71.0 6.43e-01 95.3% 77.6%
5012895 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.80 64.0 6.88e-01 89.1% 100.0%
4969863 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.80 69.0 6.57e-01 93.8% 81.3%
5010290 304.100.1.1 a+b two layers › Alpha-beta plaits › PurS-like › PurS-like › PurS 0.80 70.0 6.14e-01 93.8% 96.7%
5033281 304.100.1.1 a+b two layers › Alpha-beta plaits › PurS-like › PurS-like › PurS 0.80 67.0 6.68e-01 89.1% 96.9%
2512518 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.79 69.0 5.87e-01 95.3% 60.4%
4951473 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.79 68.0 6.92e-01 100.0% 95.2%
2741079 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.78 72.0 6.97e-01 100.0% 91.5%
2831852 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.78 66.0 5.67e-01 93.8% 60.4%
3551719 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.78 72.0 6.77e-01 100.0% 86.7%
5053060 304.100.1.1 a+b two layers › Alpha-beta plaits › PurS-like › PurS-like › PurS 0.78 66.0 5.79e-01 90.6% 96.7%
4947546 304.100.1.0 a+b two layers › Alpha-beta plaits › PurS-like › PurS-like 0.77 63.0 5.67e-01 87.5% 98.8%
5014684 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.76 63.0 6.57e-01 100.0% 98.3%
4990812 304.100.1.1 a+b two layers › Alpha-beta plaits › PurS-like › PurS-like › PurS 0.76 63.0 5.69e-01 89.1% 98.8%
1442393 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.76 68.0 5.66e-01 100.0% 57.8%
3280008 3115.1.1.2 a+b two layers › GP2-like › RplX-like › RplX-like › DUF4288 0.75 67.0 5.94e-01 96.9% 92.2%
2106284 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.74 67.0 6.67e-01 100.0% 95.5%
1442666 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.74 67.0 6.20e-01 100.0% 79.0%
3517068 3115.1.1.6 a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494 0.73 65.0 6.46e-01 100.0% 95.4%
7035 508.1.1.2 a+b three layers › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › DUF3855 0.72 58.0 4.40e-01 87.5% 100.0%
3956448 304.100.1.1 a+b two layers › Alpha-beta plaits › PurS-like › PurS-like › PurS 0.68 56.0 5.24e-01 92.2% 98.7%
3627272 3333.1.1.0 a+b two layers › Barrel domain in dedicator of cytokinesis protein 9 › Barrel domain in dedicator of cytokinesis protein 9 › Barrel domain in dedicator of cytokinesis protein 9 0.68 57.0 4.33e-01 95.3% 63.2%
1290657 5089.1.1.1 beta complex topology › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Thiol_cytolysin 0.64 52.0 3.23e-01 90.6% 31.6%
3923566 304.56.1.0 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like 0.64 52.0 4.88e-01 90.6% 100.0%
3623132 304.20.1.2 a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › Nrap_D3 0.63 49.0 3.65e-01 85.9% 96.5%
3540023 382.1.1.1 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 0.63 52.0 4.77e-01 95.3% 70.0%
4199730 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.63 54.0 4.63e-01 96.9% 61.9%
3213722 5001.1.1.106 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str 0.62 47.0 3.06e-01 84.4% 84.9%
5034429 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.62 52.0 4.42e-01 95.3% 81.8%
3697151 304.6.1.1 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C 0.62 51.0 3.36e-01 96.9% 46.7%
3484366 284.1.2.1 a+b two layers › FKBP-like › FKBP-like › Conserved carboxy-terminal domain of oxidative-stress-responsive kinase 1-like kinases › OSR1_C 0.61 48.0 4.29e-01 90.6% 98.0%
5062185 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.61 52.0 4.69e-01 96.9% 96.7%
5035636 304.26.1.1 a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP 0.61 51.0 4.50e-01 98.4% 95.0%
3338688 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.60 48.0 4.84e-01 90.6% 93.8%
5060415 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.60 52.0 4.63e-01 98.4% 94.7%
3279149 386.1.1.65 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF1059 0.59 49.0 5.03e-01 90.6% 96.7%
4033537 1119.1.1.1 a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW 0.59 46.0 3.31e-01 100.0% 26.1%
3252771 821.1.1.0 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.59 47.0 4.43e-01 95.3% 88.2%
2006900 302.4.1.0 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.58 46.0 4.02e-01 98.4% 55.8%
3214146 5001.1.1.106 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str 0.57 44.0 2.81e-01 84.4% 33.8%
4015747 304.6.1.0 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain 0.57 46.0 3.14e-01 95.3% 51.3%
4654177 1119.1.1.1 a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW 0.56 48.0 3.31e-01 100.0% 97.1%
3214502 5001.1.1.106 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str 0.56 43.0 2.76e-01 84.4% 80.0%
4015453 212.1.1.12 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › UPF0029 0.56 41.0 3.38e-01 81.2% 63.8%
4179371 1119.1.1.1 a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW 0.56 48.0 3.33e-01 100.0% 99.2%
4648475 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.55 45.0 4.66e-01 100.0% 100.0%
3251650 10.2.1.84 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Seipin 0.55 47.0 3.62e-01 98.4% 76.8%
3898917 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 45.0 3.56e-01 92.2% 42.1%
3264069 822.1.1.2 a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 0.54 38.0 3.90e-01 82.8% 80.0%
3214589 5001.1.1.106 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str 0.53 44.0 2.85e-01 96.9% 43.6%
2529893 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.52 41.0 4.05e-01 87.5% 100.0%
3651649 3397.1.1.1 a+b complex topology › Tic22 › Tic22 › Tic22 › Tic22 0.52 43.0 3.66e-01 100.0% 54.8%
3754279 11.1.1.239 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG3 0.51 44.0 3.65e-01 100.0% 57.5%
3221335 5001.1.1.106 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str 0.50 41.0 2.68e-01 95.3% 34.2%