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OM284015.1__UKL15136.1__X__00060

Bact-Vir

OM284015.1__UKL15136.1__X__00060

Identity

Accession:
OM284015 ↗
Kingdom:
phage

Quality

93.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-59
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ezjA02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.69 51.0 4.88e-01 80.7% 83.8%
2wbmA03 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.68 46.0 4.30e-01 70.2% 77.1%
3h36A00 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.68 50.0 4.62e-01 82.5% 73.1%
4yzgA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.67 53.0 3.41e-01 91.2% 20.7%
4zbgA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.66 44.0 3.20e-01 70.2% 43.5%
4nv0A02 1.10.150.340 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain 0.66 51.0 4.53e-01 84.2% 59.8%
2pdoA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.65 44.0 3.38e-01 70.2% 49.2%
1irxA05 1.10.10.350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.65 44.0 3.84e-01 71.9% 44.1%
5jrcA00 1.20.58.2140 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 45.0 3.11e-01 71.9% 22.6%
3d8pB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.64 44.0 3.16e-01 71.9% 39.4%
4ex8A00 3.40.1790.10 Alpha Beta › 3-Layer(aba) Sandwich › Indigoidine synthase fold › Indigoidine synthase domain 0.64 48.0 3.07e-01 82.5% 15.9%
6vudA01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.64 49.0 4.12e-01 89.5% 56.0%
2dxqA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.63 43.0 3.19e-01 71.9% 46.3%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.63 47.0 4.24e-01 77.2% 67.5%
1i2kA01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.63 44.0 3.56e-01 78.9% 38.9%
2yevA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.63 43.0 3.94e-01 71.9% 59.5%
1cf7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 43.0 3.93e-01 75.4% 57.3%
3icxA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.62 45.0 4.16e-01 78.9% 73.3%
3layF00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.62 44.0 3.96e-01 75.4% 66.7%
2d5wA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.62 53.0 3.54e-01 100.0% 52.7%
4l0rB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 44.0 4.06e-01 75.4% 64.4%
3g80A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.61 49.0 4.54e-01 87.7% 74.0%
3qkbA00 3.30.110.70 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hypothetical protein apc22750. Chain B 0.61 45.0 3.87e-01 87.7% 48.9%
6yz2A01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.61 45.0 3.55e-01 78.9% 56.7%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.60 48.0 4.32e-01 86.0% 74.7%
2q0yA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 42.0 3.25e-01 77.2% 31.2%
3qf7A02 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.60 43.0 4.23e-01 75.4% 81.0%
3lssA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.60 46.0 3.76e-01 86.0% 96.4%
1vp7A00 1.10.287.1040 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Exonuclease VII, small subunit 0.60 42.0 4.00e-01 73.7% 66.2%
5jgjA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.60 44.0 3.00e-01 80.7% 20.4%
3dsqA01 1.10.287.540 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.59 41.0 4.02e-01 73.7% 72.6%
1u5eA01 6.10.250.220 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.59 42.0 4.35e-01 70.2% 75.5%
2q0oC00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.59 45.0 3.87e-01 80.7% 60.5%
6iknD01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.59 44.0 2.88e-01 82.5% 72.3%
4qgpB00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.58 43.0 3.60e-01 82.5% 64.5%
2y4tA02 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.58 41.0 4.26e-01 75.4% 84.6%
3k6tB00 1.20.5.4010 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.58 43.0 4.61e-01 73.7% 89.8%
1ibcB00 3.30.70.1470 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Caspase-like 0.57 43.0 3.81e-01 82.5% 53.4%
4kc5D02 3.30.70.3290 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 41.0 3.24e-01 77.2% 63.4%
4e2aA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 40.0 3.02e-01 82.5% 28.8%
2c5iT00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 41.0 3.57e-01 84.2% 56.4%
1nbwA03 3.50.30.70 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Swiveling domain of dehydratase reactivase alpha subunit 0.54 34.0 2.52e-01 71.9% 22.7%
1vmfC00 2.60.120.460 Mainly Beta › Sandwich › Jelly Rolls › YjbQ-like 0.54 45.0 3.54e-01 100.0% 52.6%
1vphB00 2.60.120.460 Mainly Beta › Sandwich › Jelly Rolls › YjbQ-like 0.53 42.0 3.45e-01 100.0% 51.1%
3dddA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 37.0 2.85e-01 71.9% 32.3%
2zt5A02 3.30.40.230 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.53 38.0 3.42e-01 77.2% 70.2%
4xomB00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.53 43.0 3.06e-01 98.2% 86.8%
3l1nA01 6.10.140.790 Special › Helix non-globular › Helix Hairpins › 0.51 38.0 4.00e-01 80.7% 92.2%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5036736 181.1.1.1 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.82 55.0 4.80e-01 70.2% 47.1%
4013239 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.78 58.0 3.88e-01 78.9% 51.7%
5001606 5059.1.1.1 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.75 55.0 4.06e-01 78.9% 34.5%
3509997 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.71 51.0 3.42e-01 75.4% 89.8%
4011868 327.16.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system 0.71 52.0 4.74e-01 78.9% 85.3%
3566658 2006.1.4.33 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › Tim17 0.70 59.0 5.44e-01 96.5% 90.7%
4944998 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.70 46.0 3.60e-01 70.2% 31.2%
4464634 632.19.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A 0.69 52.0 4.58e-01 84.2% 58.9%
4944328 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.69 51.0 4.01e-01 82.5% 99.2%
3904232 101.1.2.37 alpha arrays › HTH › HTH › winged helix domain › E2F_TDP 0.68 49.0 4.19e-01 78.9% 47.0%
4857310 225.1.1.6 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c_2 0.68 51.0 4.08e-01 82.5% 58.8%
3968144 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.68 50.0 4.83e-01 78.9% 84.6%
4428645 3826.1.1.80 alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › GrpE 0.67 49.0 4.83e-01 77.2% 81.7%
3782561 101.1.8.7 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › NDC10_II 0.67 55.0 4.02e-01 93.0% 56.2%
4965254 331.2.1.1 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.65 49.0 4.29e-01 82.5% 88.8%
3285244 5063.1.1.19 alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › DUF2277 0.65 46.0 5.03e-01 77.2% 95.6%
3294437 5086.1.1.110 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HisKA 0.64 47.0 4.18e-01 77.2% 63.7%
3312745 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 48.0 3.50e-01 80.7% 53.1%
3544617 1008.1.1.0 alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain 0.62 47.0 4.40e-01 80.7% 91.4%
2647290 225.1.1.6 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c_2 0.61 44.0 4.10e-01 82.5% 61.3%
3433667 611.9.1.4 alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › Rx_N 0.60 43.0 3.27e-01 78.9% 87.3%
3742594 2003.1.5.82 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.60 46.0 2.96e-01 80.7% 17.4%
4983939 5059.1.1.1 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.60 44.0 3.38e-01 82.5% 75.2%
3286589 225.1.1.0 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.60 45.0 3.56e-01 86.0% 53.8%
4223484 225.1.1.6 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c_2 0.59 43.0 3.31e-01 82.5% 32.7%
3430711 5014.1.1.0 extended segments › iron-sulfur subunit (ISP) transmembrane anchor › iron-sulfur subunit (ISP) transmembrane anchor › iron-sulfur subunit (ISP) transmembrane anchor 0.59 43.0 4.01e-01 73.7% 62.9%
4987446 298.2.1.1 a+b two layers › FwdE/GAPDH domain-like › FwdE-like › FwdE-like › FmdE 0.59 41.0 3.05e-01 73.7% 70.7%
5076586 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.58 44.0 3.88e-01 89.5% 57.1%
3386333 138.1.1.0 alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain 0.58 39.0 3.64e-01 71.9% 53.3%
3804634 3755.4.1.0 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.57 44.0 3.46e-01 89.5% 45.0%
5052648 304.103.1.1 a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Nitroreductase 0.57 48.0 3.36e-01 98.2% 88.0%
3174356 2006.1.3.11 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › TOP6A-Spo11_Toprim 0.57 46.0 3.38e-01 93.0% 32.9%
4029114 2006.1.3.11 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › TOP6A-Spo11_Toprim 0.56 45.0 3.21e-01 91.2% 30.6%
4987434 298.2.1.1 a+b two layers › FwdE/GAPDH domain-like › FwdE-like › FwdE-like › FmdE 0.56 41.0 3.06e-01 78.9% 68.7%
3274400 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.55 36.0 2.78e-01 71.9% 26.0%
3607058 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.54 37.0 2.69e-01 71.9% 24.8%
4948466 846.1.1.1 a+b two layers › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › UPF0047 0.53 43.0 3.49e-01 100.0% 52.6%
4945534 846.1.1.1 a+b two layers › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › UPF0047 0.53 43.0 3.47e-01 100.0% 52.6%
4596980 5093.1.1.0 a+b complex topology › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein 0.53 42.0 2.81e-01 94.7% 48.8%
5043207 2484.1.1.16 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII 0.53 44.0 2.96e-01 93.0% 71.1%
3717186 304.9.1.106 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PF28977 0.53 41.0 3.20e-01 100.0% 35.9%
3181110 5086.1.1.110 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HisKA 0.52 42.0 3.54e-01 86.0% 57.9%
3744348 5.1.4.331 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30861 0.51 39.0 2.38e-01 94.7% 16.1%
3638204 5089.1.1.0 beta complex topology › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains 0.50 39.0 2.69e-01 94.7% 76.1%