←Back to structures
OM317910.1__UKM63213.1__PK7R_61__00060
Bact-VirOM317910.1__UKM63213.1__PK7R_61__00060
Identity
- Accession:
- OM317910 ↗
- Kingdom:
- phage
Quality
83.4
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Drexlerviridae›
Peekayseptimavirus›
Klebsiella_phage_P-K7R
TaxID: 2913092
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 21-87
Domain cluster:
representative
CATH (54)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4wfvA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.80 | 72.0 | 5.43e-01 | 98.5% | 71.9% |
| 1lfoA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.77 | 67.0 | 5.44e-01 | 97.0% | 99.2% |
| 7dpyB01 | 2.40.128.200 | Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor | 0.75 | 64.0 | 6.01e-01 | 97.0% | 98.8% |
| 1p6pA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.74 | 63.0 | 5.19e-01 | 97.0% | 100.0% |
| 2f09A00 | 2.40.128.200 | Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor | 0.73 | 65.0 | 6.10e-01 | 100.0% | 95.1% |
| 2n93A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.73 | 64.0 | 5.21e-01 | 100.0% | 98.5% |
| 4d6gA03 | 2.60.220.10 | Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal | 0.70 | 51.0 | 4.09e-01 | 77.6% | 99.2% |
| 4ccdA03 | 2.60.120.560 | Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 | 0.65 | 44.0 | 3.16e-01 | 70.1% | 56.0% |
| 4b8eB00 | 2.60.120.920 | Mainly Beta › Sandwich › Jelly Rolls › SPRY domain | 0.65 | 47.0 | 3.41e-01 | 77.6% | 78.6% |
| 3t0pA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.64 | 54.0 | 4.02e-01 | 94.0% | 49.4% |
| 3pweA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.64 | 54.0 | 4.44e-01 | 94.0% | 70.7% |
| 5gaeG01 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.64 | 38.0 | 3.55e-01 | 88.1% | 48.1% |
| 1vpkA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.64 | 54.0 | 4.44e-01 | 94.0% | 70.0% |
| 5agvA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.64 | 53.0 | 4.39e-01 | 94.0% | 67.7% |
| 4qa8A00 | 2.50.20.20 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › | 0.63 | 55.0 | 3.94e-01 | 100.0% | 89.5% |
| 4rnyA02 | 3.10.450.350 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.63 | 45.0 | 3.51e-01 | 76.1% | 52.4% |
| 5mmiG01 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.62 | 36.0 | 3.39e-01 | 86.6% | 45.2% |
| 4trtA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.62 | 53.0 | 4.33e-01 | 94.0% | 68.0% |
| 2byoA00 | 2.50.20.20 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › | 0.62 | 54.0 | 3.96e-01 | 98.5% | 92.3% |
| 2r0hA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.62 | 48.0 | 3.57e-01 | 82.1% | 71.9% |
| 3zsjA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.62 | 47.0 | 3.71e-01 | 82.1% | 76.8% |
| 6n44A00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.62 | 47.0 | 3.70e-01 | 82.1% | 77.0% |
| 3sluA02 | 3.10.450.350 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.61 | 44.0 | 3.54e-01 | 77.6% | 59.1% |
| 4agrB00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.61 | 47.0 | 3.63e-01 | 82.1% | 77.8% |
| 5wceA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.61 | 50.0 | 4.16e-01 | 94.0% | 71.3% |
| 1vpkA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.60 | 51.0 | 4.14e-01 | 94.0% | 68.0% |
| 4csdB00 | 2.120.10.70 | Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin | 0.60 | 52.0 | 3.51e-01 | 98.5% | 93.3% |
| 4k15A00 | 2.60.40.3860 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.59 | 43.0 | 3.46e-01 | 77.6% | 63.8% |
| 1epwA03 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 43.0 | 2.93e-01 | 77.6% | 72.1% |
| 3u9sE04 | 3.30.700.40 | Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › | 0.58 | 46.0 | 3.79e-01 | 86.6% | 80.0% |
| 5h4eA02 | 3.30.920.50 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain | 0.58 | 42.0 | 3.52e-01 | 100.0% | 42.9% |
| 5dzeA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 43.0 | 3.08e-01 | 80.6% | 55.8% |
| 2rcqA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.57 | 47.0 | 3.86e-01 | 98.5% | 95.7% |
| 4trtA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.57 | 47.0 | 3.97e-01 | 94.0% | 68.9% |
| 3i3tA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.57 | 43.0 | 2.77e-01 | 80.6% | 18.8% |
| 1nr0A01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.57 | 46.0 | 3.06e-01 | 92.5% | 96.0% |
| 2jeuA02 | 2.170.200.10 | Mainly Beta › Beta Complex › Regulatory Protein E2; Chain: A; Domain 2 › Papillomavirus E2 early protein domain | 0.56 | 42.0 | 3.72e-01 | 80.6% | 79.2% |
| 2giaB00 | 2.30.31.40 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › | 0.56 | 46.0 | 3.65e-01 | 92.5% | 86.3% |
| 4a0tA03 | 2.60.320.30 | Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › | 0.56 | 43.0 | 3.93e-01 | 83.6% | 82.2% |
| 4jpdA00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.56 | 47.0 | 4.14e-01 | 100.0% | 65.1% |
| 1bymA00 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.56 | 39.0 | 3.45e-01 | 73.1% | 75.3% |
| 5umsA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 42.0 | 3.67e-01 | 82.1% | 89.2% |
| 2gcjA01 | 2.30.29.150 | Mainly Beta › Roll › PH-domain like › | 0.55 | 48.0 | 3.89e-01 | 100.0% | 64.9% |
| 3ihpA03 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.55 | 42.0 | 2.66e-01 | 80.6% | 20.0% |
| 4q1vA01 | 2.140.10.30 | Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain | 0.55 | 43.0 | 2.66e-01 | 86.6% | 35.7% |
| 3ei3A02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.53 | 42.0 | 2.71e-01 | 86.6% | 36.0% |
| 1xd3C00 | 3.40.532.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ubiquitin C-terminal Hydrolase UCH-l3 › Peptidase C12, ubiquitin carboxyl-terminal hydrolase | 0.53 | 43.0 | 3.00e-01 | 89.6% | 79.3% |
| 5gm0A01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 48.0 | 3.69e-01 | 100.0% | 81.8% |
| 3ednA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.52 | 44.0 | 3.51e-01 | 94.0% | 88.1% |
| 2jwpA00 | 2.60.120.430 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin | 0.52 | 46.0 | 3.42e-01 | 100.0% | 55.2% |
| 3fm2A00 | 3.40.1570.10 | Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains | 0.52 | 46.0 | 3.67e-01 | 100.0% | 95.5% |
| 2ofqA01 | 2.60.40.2500 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 42.0 | 3.92e-01 | 94.0% | 98.9% |
| 2wdtC02 | 3.30.1490.420 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 | 0.51 | 44.0 | 3.92e-01 | 100.0% | 77.2% |
| 4pq0A02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 40.0 | 3.72e-01 | 100.0% | 67.7% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4139943 | 9.1.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin | 0.79 | 70.0 | 5.31e-01 | 98.5% | 71.6% |
| 3715024 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.75 | 66.0 | 6.05e-01 | 100.0% | 92.2% |
| 2756455 | 9.11.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like | 0.75 | 65.0 | 5.93e-01 | 98.5% | 94.4% |
| 4453958 | 274.1.1.23 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › DUF5374 | 0.73 | 49.0 | 5.14e-01 | 83.6% | 76.7% |
| 3967232 | 9.4.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains | 0.69 | 60.0 | 5.00e-01 | 100.0% | 85.8% |
| 3700781 | 3794.1.1.0 ↗ | a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit | 0.67 | 55.0 | 4.48e-01 | 91.0% | 86.9% |
| 1871494 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.67 | 55.0 | 4.54e-01 | 91.0% | 71.9% |
| 4069893 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.65 | 55.0 | 4.52e-01 | 94.0% | 69.6% |
| 3015240 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.64 | 54.0 | 4.44e-01 | 94.0% | 70.5% |
| 3607606 | 3794.1.1.3 ↗ | a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › ACCA_BT | 0.64 | 51.0 | 4.17e-01 | 88.1% | 96.0% |
| 3482448 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.64 | 49.0 | 3.50e-01 | 80.6% | 53.1% |
| 5977 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.64 | 54.0 | 4.45e-01 | 94.0% | 70.0% |
| 3387600 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.64 | 54.0 | 4.46e-01 | 94.0% | 70.0% |
| 4480621 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.63 | 54.0 | 4.45e-01 | 94.0% | 70.0% |
| 4599875 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.63 | 51.0 | 4.26e-01 | 89.6% | 75.0% |
| 4083029 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.63 | 53.0 | 4.34e-01 | 94.0% | 69.6% |
| 4591776 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.62 | 52.0 | 4.24e-01 | 94.0% | 68.5% |
| 4050655 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.62 | 52.0 | 4.25e-01 | 94.0% | 66.9% |
| 4234515 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.62 | 50.0 | 4.21e-01 | 91.0% | 70.0% |
| 144176 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.62 | 52.0 | 4.25e-01 | 94.0% | 71.0% |
| 2987540 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.61 | 54.0 | 4.36e-01 | 100.0% | 90.8% |
| 2096128 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.61 | 50.0 | 4.18e-01 | 94.0% | 72.4% |
| 4194202 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.61 | 50.0 | 4.17e-01 | 94.0% | 69.6% |
| 4463778 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.60 | 51.0 | 4.22e-01 | 94.0% | 71.7% |
| 3839477 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.60 | 49.0 | 4.10e-01 | 94.0% | 71.2% |
| 5978 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.60 | 50.0 | 4.15e-01 | 94.0% | 70.7% |
| 2878142 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.60 | 50.0 | 4.12e-01 | 94.0% | 70.7% |
| 159555 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.59 | 49.0 | 4.06e-01 | 94.0% | 69.3% |
| 3994190 | 5.1.4.169 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd | 0.57 | 46.0 | 2.94e-01 | 89.6% | 94.7% |
| 4569733 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.56 | 47.0 | 3.77e-01 | 94.0% | 72.1% |
| 5011877 | 3794.1.1.0 ↗ | a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit | 0.55 | 47.0 | 4.32e-01 | 97.0% | 84.4% |
| 4995742 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.55 | 47.0 | 4.00e-01 | 94.0% | 70.0% |
| 3406773 | 241.10.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain › GAS2 | 0.54 | 41.0 | 4.09e-01 | 94.0% | 81.4% |
| 3175342 | 633.23.1.37 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › PF29133 | 0.51 | 44.0 | 2.99e-01 | 100.0% | 75.2% |
| 3226910 | 2484.1.1.200 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH | 0.50 | 42.0 | 2.94e-01 | 92.5% | 33.2% |
| 5038850 | 4.7.1.1 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 | 0.50 | 39.0 | 3.57e-01 | 85.1% | 87.8% |