Back to structures

OM319461.1__UKZ10943.1__CZP2022_220__00219

Bact-Vir

OM319461.1__UKZ10943.1__CZP2022_220__00219

Identity

Accession:
OM319461 ↗
Kingdom:
phage

Quality

69.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 25-101
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2e9xA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.75 46.0 3.84e-01 76.6% 37.5%
4e4eA01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.74 46.0 4.86e-01 77.9% 69.0%
6wb9201 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.72 47.0 3.16e-01 77.9% 18.0%
8iprA01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.70 62.0 4.15e-01 100.0% 46.9%
4mycA01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.70 49.0 3.20e-01 72.7% 54.0%
2wgmA01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.70 48.0 4.74e-01 72.7% 67.1%
3cxbA03 1.10.1740.30 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain 0.69 48.0 4.76e-01 77.9% 69.1%
2l3lA01 1.20.58.1250 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Tubulin Binding Cofactor C, N-terminal domain 0.68 58.0 5.26e-01 94.8% 68.9%
2bdeA03 1.20.58.1160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 47.0 4.78e-01 72.7% 77.9%
1w07A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.67 48.0 3.73e-01 75.3% 83.3%
2hjmA01 1.20.120.460 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › protein pf1176 like 0.67 51.0 4.94e-01 81.8% 74.4%
1wa8A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.66 47.0 4.29e-01 74.0% 71.7%
1ug7A00 1.20.120.360 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Axin interactor, dorsalization-associated protein, N-terminal domain 0.65 54.0 4.63e-01 93.5% 75.0%
6h9xA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.64 46.0 4.15e-01 74.0% 62.7%
5ffdA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.64 49.0 4.10e-01 83.1% 89.8%
1vq8V00 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.64 41.0 4.41e-01 74.0% 76.9%
3kyiA00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.63 53.0 4.49e-01 93.5% 71.1%
1vhnA02 1.10.1200.80 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Putative flavin oxidoreducatase; domain 2 0.63 47.0 4.88e-01 81.8% 85.9%
1j5wA02 1.20.58.180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 0.62 40.0 4.10e-01 70.1% 66.2%
1wkbA03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.62 50.0 4.39e-01 90.9% 62.0%
1jkvA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.62 49.0 3.71e-01 87.0% 84.8%
3lssA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.62 44.0 3.85e-01 75.3% 50.9%
1b06A01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.62 44.0 4.69e-01 87.0% 85.1%
3nvoB02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.61 52.0 4.51e-01 92.2% 84.5%
2xq0A03 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.61 51.0 4.09e-01 93.5% 61.8%
7oq4Z01 1.20.120.950 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein DUF5062 0.61 45.0 4.20e-01 79.2% 67.3%
1y1uA01 1.20.1050.20 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › STAT transcription factor, all-alpha domain 0.60 49.0 3.72e-01 90.9% 79.5%
2jbwA01 1.20.1440.110 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase 0.60 48.0 4.39e-01 87.0% 66.0%
4aifA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.60 46.0 3.75e-01 81.8% 45.1%
2v6yA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.60 48.0 4.94e-01 88.3% 89.3%
1kblA05 1.20.80.30 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.60 41.0 3.90e-01 70.1% 79.8%
2zs0A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.59 41.0 3.48e-01 74.0% 47.9%
2katA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.59 39.0 3.42e-01 76.6% 44.3%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.59 42.0 4.27e-01 74.0% 82.4%
1eteA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.59 47.0 3.95e-01 87.0% 66.4%
3l1nA02 1.20.1280.140 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.59 47.0 4.59e-01 90.9% 94.3%
1ivhA01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.59 48.0 4.15e-01 90.9% 66.4%
2r0rB00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.58 45.0 4.52e-01 90.9% 83.3%
5x56B00 1.20.58.810 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Photosystem II Pbs27 0.58 47.0 4.26e-01 89.6% 87.6%
1yhuB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.56 45.0 3.81e-01 93.5% 93.8%
3keyA01 1.10.10.1080 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain 0.55 44.0 4.24e-01 88.3% 87.4%
2c41C01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.55 48.0 3.92e-01 100.0% 59.1%
1wfdA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.54 38.0 3.68e-01 77.9% 67.7%
1h7cA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 46.0 4.13e-01 92.2% 99.0%
2o57A01 1.10.287.840 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mycolic acid cyclopropane synthase domain like 0.52 42.0 3.89e-01 90.9% 89.5%
4yvoA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 38.0 3.36e-01 80.5% 70.6%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5014639 632.1.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.85 58.0 5.24e-01 71.4% 54.0%
3564399 3755.3.1.282 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Tmemb_cc2 0.72 50.0 4.39e-01 72.7% 49.6%
3176038 109.4.1.1317 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps53_N, VPS53_C 0.67 59.0 3.45e-01 100.0% 26.7%
4218502 605.1.1.279 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Spo7 0.67 53.0 4.72e-01 83.1% 100.0%
3695830 633.24.1.7 alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain › TMD_POM152 0.67 57.0 5.58e-01 98.7% 98.8%
4142346 5086.1.1.87 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › ING 0.67 47.0 4.15e-01 72.7% 51.8%
3462432 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 51.0 3.65e-01 90.9% 29.0%
4403218 3291.1.1.82 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › ING 0.65 46.0 4.11e-01 72.7% 55.2%
4927006 601.3.1.1 alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › Hpt 0.65 55.0 4.82e-01 93.5% 77.4%
3787585 5086.1.1.87 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › ING 0.64 46.0 4.13e-01 74.0% 55.2%
3234270 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.64 49.0 4.74e-01 80.5% 75.3%
3869132 5050.1.1.22 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1_like 0.64 54.0 4.02e-01 96.1% 71.9%
5031855 632.15.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) 0.63 45.0 4.47e-01 74.0% 76.2%
3608673 109.4.1.194 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_10 0.63 55.0 3.57e-01 96.1% 63.5%
3527051 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.63 51.0 4.81e-01 90.9% 75.8%
3327912 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 45.0 3.42e-01 89.6% 30.8%
3967073 601.3.1.0 alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain 0.62 50.0 4.37e-01 89.6% 76.7%
3456188 109.7.1.10 alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E › WAV3_C 0.62 46.0 4.71e-01 90.9% 82.7%
3692580 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.62 55.0 4.04e-01 100.0% 38.6%
3958664 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.62 55.0 4.41e-01 100.0% 52.3%
3288918 106.1.1.11 alpha arrays › Globin-like › Globin-like › Globin-like › RsbRD_N 0.62 53.0 4.42e-01 97.4% 60.0%
3233878 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.62 49.0 4.18e-01 85.7% 71.2%
3608758 604.12.1.8 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › KATNA1_MIT 0.61 49.0 4.90e-01 88.3% 85.0%
3315914 5050.1.1.1 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr 0.61 53.0 4.37e-01 100.0% 56.6%
3696174 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.60 52.0 4.30e-01 97.4% 56.4%
3697514 109.4.1.210 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19 0.60 46.0 3.12e-01 89.6% 21.4%
165995 604.12.1.1 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.60 48.0 4.94e-01 88.3% 89.3%
4947878 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.60 52.0 3.95e-01 96.1% 43.9%
3599164 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.60 52.0 3.80e-01 100.0% 38.7%
3191383 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.59 52.0 3.55e-01 100.0% 28.3%
3974062 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.59 52.0 3.91e-01 100.0% 40.5%
4971727 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.59 50.0 3.75e-01 94.8% 75.9%
4929706 604.12.1.1 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.59 44.0 4.63e-01 80.5% 90.0%
4025407 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.58 51.0 3.88e-01 100.0% 43.7%
5035754 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.58 49.0 3.79e-01 97.4% 44.2%
5032368 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.58 43.0 4.67e-01 79.2% 95.4%
3243110 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.58 48.0 3.85e-01 93.5% 85.0%
143387 601.3.1.1 alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › Hpt 0.58 47.0 4.23e-01 93.5% 79.6%
3252144 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.57 44.0 4.60e-01 81.8% 90.0%
3920483 5050.1.1.10 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_2 0.57 50.0 3.59e-01 100.0% 34.2%
4947260 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.57 43.0 4.33e-01 81.8% 78.8%
4008038 5050.1.1.20 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_4 0.57 48.0 3.67e-01 96.1% 43.2%
4947815 6155.1.1.0 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.56 48.0 4.47e-01 97.4% 80.0%
4933335 604.12.1.1 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.55 42.0 4.21e-01 83.1% 78.8%
4927173 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.53 44.0 4.26e-01 89.6% 81.2%
3563670 3758.1.1.54 alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins › ApoL 0.52 44.0 4.18e-01 94.8% 77.8%