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OM334891.1__UKM17103.1__X__00024

Bact-Vir

OM334891.1__UKM17103.1__X__00024

Identity

Accession:
OM334891 ↗
Kingdom:
phage

Quality

78.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-45
PDB
D2 high residues 55-110
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10065.15 best DUF2303 29.9 4.50e-07 100.0% 19.7%
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qqzA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.71 55.0 4.30e-01 100.0% 40.9%
1zswA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.68 56.0 3.95e-01 100.0% 29.2%
3p8aA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.64 56.0 4.09e-01 100.0% 36.3%
4grhA00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.64 53.0 3.24e-01 100.0% 30.1%
1sxjH01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.63 48.0 3.85e-01 92.9% 39.5%
4i8oA02 3.30.160.690 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Bacterial toxin RNase RnlA/LsoA, N repeated domain 0.63 52.0 4.56e-01 100.0% 60.0%
2r5vB02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.62 53.0 3.70e-01 100.0% 42.1%
6zepA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.61 49.0 3.12e-01 94.6% 36.8%
3iuzA00 3.10.180.50 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 0.61 50.0 3.21e-01 100.0% 20.0%
2greA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.59 47.0 3.19e-01 94.6% 44.1%
2xrnA02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.58 41.0 2.99e-01 76.8% 71.8%
3r4kA02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.58 45.0 3.33e-01 92.9% 92.7%
2r5vA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.58 44.0 3.40e-01 100.0% 33.3%
3pfeA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.57 44.0 2.92e-01 94.6% 43.3%
1y5oA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 47.0 3.81e-01 96.4% 71.3%
6dnzA02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.56 48.0 3.43e-01 98.2% 79.8%
3bjnA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.56 43.0 3.21e-01 89.3% 97.5%
1ylxA00 3.30.70.1480 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like 0.56 43.0 3.79e-01 94.6% 60.6%
4xq7A01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.55 45.0 3.45e-01 100.0% 72.4%
4nvsA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.55 45.0 3.43e-01 100.0% 65.2%
3li9A02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 44.0 3.45e-01 94.6% 89.1%
1ewqA04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.55 43.0 3.41e-01 92.9% 50.7%
5hpfA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.54 40.0 2.94e-01 82.1% 78.9%
3g12B00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.54 45.0 3.69e-01 100.0% 81.4%
3gs9A01 6.20.110.10 Special › Other non-globular › Thrombin, subunit H › 0.54 40.0 3.61e-01 82.1% 97.5%
2f7vA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.53 42.0 2.91e-01 98.2% 45.6%
3c5iD01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 41.0 3.80e-01 87.5% 72.4%
3a0rA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 36.0 3.05e-01 73.2% 87.7%
3rmuA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 42.0 3.41e-01 100.0% 98.5%
2f4wB00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.53 37.0 2.82e-01 76.8% 69.1%
5tz6B02 3.10.129.120 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › 0.52 39.0 2.96e-01 85.7% 40.9%
5ay6A01 2.60.98.20 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Flagellar hook protein FlgE 0.52 41.0 3.13e-01 100.0% 91.8%
3we5A00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.51 36.0 2.83e-01 76.8% 83.7%
3ci0I00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.51 43.0 3.88e-01 98.2% 84.3%
3fljA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 45.0 3.39e-01 100.0% 53.9%
3ffhA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 43.0 3.32e-01 96.4% 73.5%
5y6iA02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.51 38.0 2.99e-01 92.9% 96.9%
2kilA00 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.51 37.0 2.74e-01 83.9% 47.5%
7solA02 3.10.290.60 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › Ubiquitin-activating enzyme E1, UFD domain 0.51 40.0 3.52e-01 100.0% 87.4%
2h2yA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.51 41.0 3.37e-01 94.6% 48.3%
5w1eA01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.51 38.0 2.88e-01 92.9% 93.6%
2ewvA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 37.0 3.14e-01 94.6% 44.1%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.50 36.0 3.81e-01 75.0% 100.0%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4318302 896.1.1.6 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › DUF2303 0.94 86.0 7.04e-01 100.0% 58.5%
3823244 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.71 57.0 4.34e-01 91.1% 48.9%
4973171 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.69 55.0 5.39e-01 100.0% 83.3%
4927485 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.67 52.0 4.19e-01 100.0% 41.7%
4977926 211.1.1.24 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Ble-like_N 0.65 52.0 5.01e-01 100.0% 80.0%
4193424 2011.1.1.6 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M20 0.64 53.0 3.45e-01 94.6% 45.7%
146310 211.1.1.6 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase_3 0.64 56.0 4.64e-01 100.0% 55.8%
3250470 3307.1.1.0 a+b two layers › Domain in small RNA methyltransferase HEN1 › Domain in small RNA methyltransferase HEN1 › Domain in small RNA methyltransferase HEN1 0.63 53.0 4.68e-01 100.0% 90.0%
3940678 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.63 54.0 4.63e-01 100.0% 61.1%
3599909 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.62 46.0 3.75e-01 82.1% 46.4%
3736149 511.1.1.0 beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain 0.61 49.0 3.62e-01 91.1% 44.4%
3927151 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.61 52.0 3.55e-01 100.0% 29.8%
4970370 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.60 44.0 4.47e-01 98.2% 87.0%
5079139 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.60 50.0 3.57e-01 100.0% 30.3%
3408937 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.58 42.0 3.82e-01 87.5% 55.0%
3700925 304.102.1.0 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase 0.58 47.0 3.03e-01 98.2% 95.0%
4049822 5.1.4.62 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN 0.58 38.0 2.29e-01 89.3% 8.8%
3739911 3597.1.1.3 beta sandwiches › Starch specific carbohydrate-binding modules › Starch specific carbohydrate-binding modules › Starch specific carbohydrate-binding modules › CBM_Mok13 0.57 39.0 3.14e-01 71.4% 75.7%
4358407 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.57 46.0 3.82e-01 96.4% 86.4%
3927360 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.56 45.0 4.14e-01 100.0% 96.5%
3258377 331.23.1.0 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.56 44.0 3.94e-01 94.6% 65.6%
6647 241.8.1.1 a+b two layers › Type III secretory system chaperone-like › GK1464-like › GK1464-like › DUF5634 0.56 43.0 3.80e-01 94.6% 60.0%
4970249 223.1.1.6 a+b three layers › Profilin-like › sensor domains › sensor domains › dCache_1 0.56 44.0 2.89e-01 89.3% 48.8%
4299844 223.1.1.135 a+b three layers › Profilin-like › sensor domains › sensor domains › Sensor_TM1, Stimulus_sens_1 0.55 45.0 3.24e-01 91.1% 70.0%
3596298 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.55 41.0 3.42e-01 82.1% 45.7%
3644852 216.1.1.1 a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.55 39.0 2.75e-01 78.6% 55.1%
3486174 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.54 38.0 2.80e-01 76.8% 66.5%
5018234 223.1.1.6 a+b three layers › Profilin-like › sensor domains › sensor domains › dCache_1 0.54 44.0 2.86e-01 94.6% 44.8%
3718301 330.2.1.0 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) 0.54 40.0 3.41e-01 80.4% 48.4%
4587247 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.54 43.0 3.67e-01 87.5% 80.0%
4882058 216.1.1.1 a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.54 37.0 2.80e-01 76.8% 66.9%
3991810 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.54 42.0 3.23e-01 92.9% 38.7%
4062698 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 42.0 2.41e-01 91.1% 15.1%
3914857 3435.1.1.2 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › CENP-N 0.53 42.0 3.49e-01 100.0% 55.2%
4308520 601.23.1.4 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.53 41.0 2.68e-01 92.9% 23.0%
4160947 601.23.1.4 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.53 40.0 2.67e-01 92.9% 23.3%
4940436 3414.1.1.0 beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein 0.53 42.0 3.77e-01 96.4% 81.1%
3509550 216.1.1.1 a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.53 37.0 2.75e-01 76.8% 76.2%
2420861 3435.1.1.2 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › CENP-N 0.52 41.0 3.34e-01 94.6% 49.6%
1155590 54.1.1.6 beta barrels › EV matrix protein › EV matrix protein › EV matrix protein › Matrix_Paramyxo_C 0.52 38.0 2.67e-01 78.6% 58.6%
3594517 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.52 42.0 2.80e-01 100.0% 95.7%
4819450 110.1.1.5 alpha arrays › DEATH domain › DEATH domain › DEATH domain › CENP-N 0.52 41.0 3.30e-01 100.0% 70.5%
349045 223.1.1.3 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.52 40.0 3.19e-01 98.2% 86.8%
4969654 601.23.1.0 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III 0.52 38.0 2.58e-01 89.3% 23.5%
4934956 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.51 39.0 3.60e-01 92.9% 94.1%
4337811 216.1.1.1 a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.51 38.0 2.77e-01 87.5% 55.3%
3979092 283.2.1.1 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.50 40.0 3.40e-01 100.0% 83.5%
1107912 71.1.1.7 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_2 0.50 43.0 3.06e-01 100.0% 63.6%
4515483 601.23.1.4 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.50 38.0 2.55e-01 94.6% 23.5%