←Back to structures

OM339528.1__ULF50331.1__CPTSV76_068__00067

Bact-Vir

OM339528.1__ULF50331.1__CPTSV76_068__00067

Identity

Accession:
OM339528 ↗
Kingdom:
phage

Quality

78.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Tequatrovirus› Enterobacteria_phage_SV76

TaxID: 69613

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-32
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26911.1 best Phage_T4_Y12I 52.1 9.70e-14 100.0% 40.0%
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4impA02 3.40.50.11460 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.68 54.0 3.38e-01 100.0% 22.7%
1ufvA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.67 52.0 3.39e-01 100.0% 19.8%
6xy9A01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.67 53.0 3.12e-01 100.0% 11.3%
3wrwA02 3.40.50.12030 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Uncharacterised protein family UPF0261, NC domain 0.67 53.0 3.27e-01 100.0% 15.5%
5mxpA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.67 51.0 3.02e-01 100.0% 11.6%
2l82A00 3.40.50.11230 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.66 52.0 3.42e-01 100.0% 19.8%
7otsB01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.66 50.0 3.02e-01 100.0% 12.1%
4opmA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.66 51.0 3.03e-01 100.0% 11.4%
1z0sA01 3.40.50.10330 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Probable inorganic polyphosphate/atp-NAD kinase; domain 1 0.66 50.0 3.56e-01 100.0% 25.8%
3qvmB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.66 50.0 3.03e-01 100.0% 12.1%
1t9hA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.65 49.0 3.36e-01 100.0% 26.0%
1xdwA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.63 48.0 3.34e-01 100.0% 24.1%
4ifeA02 3.30.420.240 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.63 46.0 2.90e-01 100.0% 15.0%
2cb9A01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.62 47.0 3.09e-01 100.0% 19.5%
4hjhA02 3.40.120.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 0.62 48.0 3.82e-01 100.0% 63.0%
3ngxA02 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.62 46.0 3.69e-01 100.0% 77.4%
4b4uB01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.61 47.0 3.26e-01 100.0% 24.1%
1u2eA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.61 43.0 2.66e-01 100.0% 27.6%
2yq5C01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.60 45.0 3.19e-01 100.0% 24.1%
5zctA01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.60 45.0 3.31e-01 100.0% 29.8%
4lubB01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.59 44.0 3.32e-01 100.0% 31.0%
3looB01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.59 46.0 2.78e-01 100.0% 15.5%
3vpbA01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 45.0 3.42e-01 100.0% 32.7%
4nimA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 44.0 2.76e-01 100.0% 13.3%
1wu7A03 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.58 44.0 3.42e-01 100.0% 38.1%
5u9cA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 43.0 2.79e-01 100.0% 17.1%
1xcjA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 44.0 2.76e-01 100.0% 16.2%
5e7qA01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.58 41.0 2.41e-01 100.0% 8.0%
3n0xA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.58 42.0 2.86e-01 96.9% 20.1%
4wd3A01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 42.0 3.13e-01 100.0% 45.0%
2qruA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 40.0 2.52e-01 100.0% 28.3%
4cjxA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 41.0 2.96e-01 100.0% 22.9%
3gu3A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 41.0 2.82e-01 100.0% 19.2%
1z6aA01 3.40.50.10810 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tandem AAA-ATPase domain 0.56 39.0 2.57e-01 100.0% 24.3%
2m6rA00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.55 39.0 2.77e-01 100.0% 25.5%
5nnnA02 3.40.50.1370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase 0.55 39.0 2.75e-01 100.0% 59.1%
5h3hB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 40.0 2.49e-01 100.0% 59.1%
2k6hA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.55 40.0 2.76e-01 100.0% 34.3%
2vhaA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.52 38.0 2.96e-01 93.8% 93.8%
4c7oA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 36.0 2.44e-01 100.0% 17.0%
4c0rA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.51 35.0 2.83e-01 100.0% 33.3%
1ghhA00 3.30.910.10 Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › DinI-like 0.51 34.0 3.00e-01 100.0% 55.6%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3690938 7579.1.1.8 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.69 55.0 3.24e-01 100.0% 12.1%
4771678 2007.1.3.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.66 52.0 3.55e-01 100.0% 23.7%
3983740 7579.1.1.29 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › UPF0227 0.66 50.0 3.26e-01 100.0% 17.4%
4322161 7504.1.1.1 ↗ a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like 0.66 49.0 3.18e-01 100.0% 16.6%
10445 2007.1.8.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Uroporphyrinogen III synthase (U3S, HemD) › HEM4 0.66 49.0 4.88e-01 100.0% 83.3%
4887051 7504.1.1.1 ↗ a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like 0.65 50.0 3.24e-01 100.0% 17.4%
1763075 7523.1.1.17 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › OpuAC 0.65 50.0 3.90e-01 100.0% 43.0%
3978355 7579.1.1.13 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DLH 0.65 46.0 3.00e-01 100.0% 39.5%
4580439 2007.1.1.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › GATase 0.65 49.0 3.16e-01 100.0% 16.8%
3479125 7516.1.1.0 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases 0.64 48.0 2.85e-01 100.0% 30.3%
5065162 2003.1.10.23 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › LysX_preATP_grasp 0.63 49.0 3.81e-01 100.0% 38.8%
5061841 2003.1.10.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain 0.63 49.0 3.90e-01 100.0% 41.2%
4572392 2003.1.5.67 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_12 0.63 47.0 2.63e-01 96.9% 6.0%
4984482 2003.1.10.23 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › LysX_preATP_grasp 0.62 48.0 3.71e-01 100.0% 36.7%
4976952 2003.1.10.23 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › LysX_preATP_grasp 0.62 49.0 3.84e-01 100.0% 38.8%
4947052 2002.1.1.77 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › RNase_P_p30 0.62 46.0 2.93e-01 100.0% 15.2%
3842017 7579.1.1.6 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.62 45.0 2.78e-01 100.0% 12.6%
4984035 2003.1.10.23 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › LysX_preATP_grasp 0.61 46.0 3.63e-01 100.0% 36.7%
3737831 7579.1.1.44 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_6 0.61 47.0 2.77e-01 100.0% 10.0%
4599869 2003.1.10.23 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › LysX_preATP_grasp 0.61 48.0 3.77e-01 100.0% 38.8%
5027892 2003.1.1.20 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.61 47.0 2.81e-01 100.0% 12.5%
3953705 7579.1.1.6 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.61 45.0 2.74e-01 100.0% 11.9%
4436240 7502.1.1.6 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HisZ_C 0.60 48.0 4.26e-01 100.0% 58.2%
5053603 7579.1.1.42 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Hydrolase_4 0.60 44.0 2.74e-01 100.0% 13.1%
4203176 7502.1.1.6 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HisZ_C 0.60 46.0 3.99e-01 100.0% 52.4%
3958179 7579.1.1.0 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.60 45.0 2.76e-01 100.0% 12.8%
4560498 2003.1.1.38 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › THF_DHG_CYH_C 0.60 47.0 3.00e-01 100.0% 16.4%
4329191 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.59 45.0 2.72e-01 100.0% 10.8%
3282248 7579.1.1.44 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_6 0.59 44.0 2.67e-01 100.0% 11.0%
3283061 2006.1.4.3 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › NYN 0.59 40.0 2.81e-01 100.0% 82.9%
5000068 2003.1.10.23 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › LysX_preATP_grasp 0.59 43.0 3.44e-01 100.0% 36.7%
4962460 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.58 42.0 3.72e-01 100.0% 49.2%
5065123 7512.1.1.0 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.58 43.0 2.89e-01 100.0% 20.0%
3327611 2007.1.3.33 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Receiver_CRE1 0.58 43.0 4.14e-01 100.0% 71.1%
4890840 2003.1.1.67 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_10 0.58 45.0 3.63e-01 100.0% 42.1%
4963979 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.57 42.0 3.61e-01 100.0% 48.6%
4658984 2003.1.1.38 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › THF_DHG_CYH_C 0.57 42.0 2.84e-01 100.0% 19.6%
4941966 2003.1.10.23 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › LysX_preATP_grasp 0.55 41.0 3.25e-01 90.6% 36.3%
1519843 7523.1.1.0 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.51 35.0 2.83e-01 100.0% 33.3%
3257391 7579.1.1.6 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.51 34.0 2.23e-01 100.0% 44.3%
3363441 7579.1.1.6 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.50 35.0 2.11e-01 100.0% 67.7%