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OM386655.1__UPW37802.1__ESCO10_00214__00068

Bact-Vir

OM386655.1__UPW37802.1__ESCO10_00214__00068

Identity

Accession:
OM386655 ↗
Kingdom:
phage

Quality

77.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Dhakavirus› Escherichia_phage_vB_EcoM_ESCO10

TaxID: 2918865

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-98
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26899.1 best Phage_T4_Y05B 135.7 3.00e-39 91.4% 30.4%
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5xs2B02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.72 50.0 4.44e-01 72.0% 85.6%
1uurA03 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.70 54.0 5.51e-01 81.7% 100.0%
6cy5A01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.69 58.0 5.94e-01 91.4% 97.8%
1zu4A01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.67 54.0 5.58e-01 88.2% 93.1%
2ivxB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.65 45.0 3.93e-01 71.0% 83.6%
3umgA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.64 33.0 3.76e-01 91.4% 64.8%
1zp2A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.63 44.0 4.14e-01 72.0% 98.2%
2b9rA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.63 44.0 3.90e-01 74.2% 56.4%
1vw4801 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.63 46.0 5.06e-01 88.2% 100.0%
5zorA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.62 44.0 4.87e-01 79.6% 97.3%
5tgtA02 1.10.10.350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.61 44.0 4.02e-01 75.3% 69.9%
2i7uA00 6.10.250.1010 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.61 36.0 4.17e-01 97.8% 87.1%
1ls1A01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.60 48.0 4.90e-01 87.1% 95.5%
1a41A02 1.20.120.380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 0.60 41.0 4.18e-01 72.0% 85.1%
3lxuX01 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.59 44.0 3.02e-01 78.5% 95.8%
1eyvB00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.57 43.0 3.88e-01 80.6% 75.2%
3wvoC02 1.10.132.100 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.57 39.0 3.57e-01 71.0% 87.7%
3s64A00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.57 38.0 4.02e-01 71.0% 79.0%
3f4mA00 1.20.1440.160 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like 0.55 39.0 3.34e-01 74.2% 94.2%
1dqeA00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.55 45.0 4.03e-01 92.5% 78.8%
7m2wE01 1.20.120.1900 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Gamma-tubulin complex, C-terminal domain 0.55 43.0 3.06e-01 86.0% 35.8%
3gziA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.55 46.0 3.56e-01 90.3% 57.1%
2i53A01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.55 38.0 3.33e-01 72.0% 74.8%
3c02A00 1.20.1080.10 Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. 0.54 44.0 3.28e-01 87.1% 92.6%
2hxoA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 39.0 3.49e-01 78.5% 95.8%
1d2zB00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.54 44.0 3.85e-01 92.5% 66.0%
5m43A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.53 40.0 3.36e-01 80.6% 81.0%
3frqB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 41.0 3.37e-01 86.0% 58.7%
2m4eA00 1.20.120.1930 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein PF16691 family 0.53 35.0 3.61e-01 78.5% 72.1%
3agdA01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 46.0 3.25e-01 98.9% 84.8%
2wglA00 1.10.4190.10 Mainly Alpha › Orthogonal Bundle › Urease accessory protein UreF › Urease accessory protein UreF 0.53 42.0 3.35e-01 90.3% 61.2%
3c2gB01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.52 40.0 2.47e-01 81.7% 17.6%
1q0gA00 1.20.120.400 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nickel-containing superoxide dismutase 0.52 40.0 3.74e-01 83.9% 92.3%
1zk8B02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.52 45.0 4.03e-01 95.7% 79.5%
3b0pA02 1.20.120.1460 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.52 35.0 3.84e-01 86.0% 89.3%
2fd5A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 44.0 3.94e-01 95.7% 84.1%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4518433 181.1.1.1 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.69 52.0 5.32e-01 80.6% 95.6%
4222771 181.1.1.1 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.67 53.0 5.24e-01 87.1% 85.0%
3543620 604.1.1.95 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › KIAA1755_C 0.64 35.0 3.47e-01 87.1% 50.5%
5044994 181.1.1.1 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.64 50.0 5.16e-01 83.9% 100.0%
3406914 108.1.1.99 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6, EF-hand_7 0.62 52.0 5.03e-01 94.6% 82.9%
4929833 181.1.1.1 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.61 47.0 4.76e-01 82.8% 93.3%
5042713 181.1.1.1 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.60 46.0 4.77e-01 83.9% 100.0%
3503329 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.60 36.0 3.61e-01 89.2% 58.9%
3658080 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.60 42.0 3.52e-01 74.2% 69.7%
3386289 181.1.1.1 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.59 46.0 4.85e-01 82.8% 97.5%
3931392 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.59 46.0 4.73e-01 84.9% 98.8%
4514466 132.1.1.0 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) 0.59 49.0 4.93e-01 91.4% 95.8%
5043977 181.1.1.1 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.59 42.0 4.52e-01 75.3% 98.7%
3277203 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.57 40.0 3.44e-01 73.1% 69.7%
3793751 108.1.1.107 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7, EF-hand_8 0.57 45.0 4.70e-01 90.3% 97.6%
3261598 3914.1.1.1 ↗ alpha bundles › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › Anoctamin 0.56 38.0 2.51e-01 71.0% 54.3%
4948173 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.56 44.0 2.95e-01 86.0% 31.0%
4304666 532.1.1.0 ↗ alpha arrays › Type III secretion system domain-like › Antibiotic binding domain of TipA-like multidrug resistance regulators › Antibiotic binding domain of TipA-like multidrug resistance regulators 0.53 39.0 3.89e-01 80.6% 83.0%
3579981 632.11.1.14 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like › TMEM107 0.53 33.0 3.22e-01 95.7% 58.0%
3949818 191.1.1.0 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.52 41.0 3.49e-01 84.9% 82.6%
3696578 109.4.1.332 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Mtf2 0.52 39.0 2.79e-01 79.6% 37.0%
3459060 186.2.1.1 ↗ alpha arrays › lambda integrase-N-like › VEFS domain › VEFS domain › VEFS-Box 0.51 37.0 3.29e-01 76.3% 52.5%
3864552 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.51 29.0 2.90e-01 90.3% 49.0%
3496174 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.50 42.0 2.59e-01 93.5% 29.8%
D2 high residues 113-216
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26899.1 best Phage_T4_Y05B 163.3 1.20e-47 100.0% 36.4%
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4q5eA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.68 43.0 4.97e-01 92.3% 89.3%
4qmfB01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.66 39.0 4.26e-01 83.7% 72.0%
2pulB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.65 40.0 4.24e-01 92.3% 69.6%
3eeeA00 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.65 52.0 4.30e-01 100.0% 47.9%
7x4lC02 3.90.1150.160 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.63 44.0 4.17e-01 99.0% 59.4%
2c47A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.63 38.0 4.45e-01 92.3% 86.3%
1zodA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.62 42.0 3.85e-01 98.1% 51.1%
3ezjA02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.61 34.0 4.01e-01 81.7% 80.9%
2cveA02 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 35.0 4.10e-01 85.6% 86.4%
4ritA01 3.90.1150.170 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.60 41.0 3.24e-01 99.0% 32.4%
2x7gA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 39.0 4.15e-01 92.3% 77.3%
5xnsC00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.60 34.0 4.03e-01 95.2% 82.9%
3tf8B00 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.59 47.0 3.95e-01 100.0% 48.9%
3hbxA03 3.90.1150.160 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.59 35.0 3.78e-01 88.5% 68.2%
2l48A00 3.30.70.2030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 34.0 3.72e-01 93.3% 67.1%
3va7A05 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.59 39.0 3.97e-01 93.3% 69.0%
2kilA00 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.59 47.0 3.96e-01 100.0% 49.7%
6liuC02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.59 39.0 3.84e-01 98.1% 61.2%
2y8yA01 3.30.70.1200 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 1 0.59 38.0 4.15e-01 95.2% 80.2%
2yweA03 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.58 36.0 3.92e-01 87.5% 76.8%
7xinA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.57 39.0 3.88e-01 98.1% 66.1%
6qpqB00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.57 36.0 4.00e-01 94.2% 81.5%
1b24A01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.57 39.0 4.03e-01 90.4% 76.8%
2vqcA00 1.10.10.1470 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › F-112 protein-like 0.56 35.0 4.14e-01 85.6% 92.9%
5g4iB01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.56 38.0 3.40e-01 98.1% 45.6%
2pt7G02 3.30.1370.180 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.56 36.0 4.26e-01 70.2% 100.0%
5hs7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 32.0 3.28e-01 100.0% 58.2%
3c0wA02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.55 39.0 3.93e-01 82.7% 72.8%
5xd6B01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 35.0 3.70e-01 92.3% 71.3%
1fpqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 37.0 3.51e-01 91.3% 55.8%
2x3gA00 3.30.70.1910 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 40.0 3.88e-01 95.2% 69.0%
2mlgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 34.0 3.79e-01 87.5% 84.4%
1kyzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 37.0 3.73e-01 93.3% 70.9%
2g47A03 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.53 46.0 3.61e-01 97.1% 74.4%
1vs3A02 3.30.70.660 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Pseudouridine synthase I, catalytic domain, C-terminal subdomain 0.53 44.0 4.04e-01 94.2% 74.3%
3zxoA00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.53 41.0 3.90e-01 100.0% 70.4%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 33.0 3.41e-01 90.4% 65.0%
2lrrA00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.52 33.0 3.87e-01 100.0% 92.9%
6dw1A00 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.52 46.0 3.75e-01 100.0% 80.5%
1s12A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.52 36.0 3.76e-01 95.2% 78.7%
3g3zA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 31.0 3.84e-01 87.5% 96.9%
3zmdA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 34.0 3.03e-01 91.3% 45.3%
2zzeA04 3.30.980.10 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 0.52 40.0 4.14e-01 98.1% 92.6%
1zhvA00 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.51 38.0 3.53e-01 78.8% 79.9%
2ln3A00 3.30.110.140 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › 0.51 34.0 3.73e-01 97.1% 85.5%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4996212 2006.1.1.3 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Trehalose_PPase 0.71 48.0 3.66e-01 98.1% 30.4%
3460668 3012.1.1.1 ↗ a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Trehalose_PPase 0.68 47.0 5.29e-01 98.1% 97.3%
4985569 873.1.1.12 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › PF27313 0.68 50.0 4.57e-01 100.0% 59.3%
3249558 3012.1.1.1 ↗ a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Trehalose_PPase 0.68 47.0 5.22e-01 99.0% 92.5%
3290652 306.2.1.0 ↗ a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › C-terminal domain of arginine repressor 0.66 43.0 4.57e-01 91.3% 74.4%
5062792 3012.1.1.0 ↗ a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.66 43.0 4.92e-01 96.2% 93.3%
5006953 873.1.1.12 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › PF27313 0.66 48.0 4.89e-01 100.0% 79.0%
4928493 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.65 47.0 4.49e-01 100.0% 65.8%
3407270 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.64 37.0 4.17e-01 81.7% 77.3%
3365319 3012.1.1.11 ↗ a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › PF27677 0.63 45.0 4.96e-01 98.1% 97.5%
5020278 3012.1.1.19 ↗ a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › PF27313 0.62 45.0 4.37e-01 100.0% 67.8%
3165990 310.3.1.22 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › PF27480, PF30181 0.62 46.0 4.49e-01 99.0% 70.4%
4411010 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.62 44.0 4.02e-01 100.0% 56.3%
5068345 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 36.0 4.22e-01 93.3% 84.3%
3455348 3696.1.1.0 ↗ a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related 0.62 38.0 3.93e-01 70.2% 64.0%
4941238 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 36.0 4.25e-01 94.2% 85.7%
4955182 101.1.2.143 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_34 0.61 34.0 3.52e-01 94.2% 57.0%
4420323 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.60 37.0 3.97e-01 92.3% 70.0%
5068034 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 34.0 3.35e-01 93.3% 49.6%
137125 873.1.1.5 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB 0.60 50.0 4.13e-01 100.0% 51.4%
4942158 101.1.2.39 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA 0.60 34.0 4.11e-01 93.3% 87.7%
3285086 3268.1.1.0 ↗ a+b two layers › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase 0.60 30.0 3.45e-01 93.3% 64.0%
4928064 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 35.0 4.15e-01 94.2% 86.8%
4997336 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.60 39.0 4.04e-01 97.1% 71.6%
2627446 873.1.1.5 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB 0.59 48.0 3.96e-01 100.0% 47.9%
4568247 304.156.1.0 ↗ a+b two layers › Alpha-beta plaits › DNA translocase FtsK N-terminal domain › DNA translocase FtsK N-terminal domain 0.59 47.0 4.93e-01 98.1% 98.9%
5048761 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 34.0 3.96e-01 94.2% 81.4%
2330628 873.1.1.5 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB 0.59 46.0 3.88e-01 100.0% 48.1%
5042730 101.1.2.143 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_34 0.59 33.0 3.61e-01 95.2% 65.9%
5039328 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 32.0 3.82e-01 93.3% 78.6%
4930738 101.1.2.39 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA 0.58 35.0 4.06e-01 93.3% 87.1%
4956404 306.6.1.0 ↗ a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like 0.58 39.0 4.13e-01 96.2% 76.8%
4991498 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 36.0 4.25e-01 95.2% 92.9%
4062594 328.6.1.2 ↗ a+b two layers › IF3-like › EPT/RTPC-like › EPT/RTPC-like › RTC 0.57 43.0 3.27e-01 81.7% 92.7%
5026329 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 32.0 4.06e-01 100.0% 98.3%
3415465 320.1.1.1 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.56 35.0 3.85e-01 87.5% 76.5%
4928345 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 35.0 4.15e-01 94.2% 95.7%
4980206 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 33.0 3.75e-01 100.0% 77.5%
5012120 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.55 39.0 3.82e-01 100.0% 65.8%
4981204 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 38.0 4.06e-01 100.0% 84.3%
4991492 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.54 39.0 3.76e-01 100.0% 65.8%
4959073 101.1.2.271 ↗ alpha arrays › HTH › HTH › winged helix domain › B-block_TFIIIC 0.54 34.0 3.26e-01 87.5% 54.2%
3960673 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.53 32.0 3.87e-01 94.2% 95.4%
1299892 101.1.2.88 ↗ alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.52 35.0 3.45e-01 91.3% 62.3%
4157944 101.1.2.39 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA 0.52 36.0 4.09e-01 86.5% 97.3%
4347454 101.1.2.39 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA 0.52 34.0 4.01e-01 85.6% 98.6%
3347818 101.1.2.529 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7599 0.52 33.0 3.70e-01 96.2% 88.0%
4983426 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 34.0 3.79e-01 76.0% 88.7%
3515401 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 36.0 3.45e-01 72.1% 76.7%
3805546 101.1.2.24 ↗ alpha arrays › HTH › HTH › winged helix domain › MAGE 0.51 34.0 3.31e-01 100.0% 60.9%
4149931 101.1.2.39 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA 0.51 32.0 3.79e-01 85.6% 94.3%
3946399 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 39.0 3.68e-01 100.0% 65.4%
5011597 101.1.2.143 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_34 0.51 34.0 3.51e-01 100.0% 71.7%
4945186 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 32.0 2.98e-01 88.5% 49.2%
3784677 101.1.2.312 ↗ alpha arrays › HTH › HTH › winged helix domain › MSC 0.51 36.0 2.84e-01 73.1% 40.5%
3512389 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 32.0 3.82e-01 85.6% 97.1%
D3 medium residues 241-294
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26899.1 best Phage_T4_Y05B 81.9 7.70e-23 100.0% 19.3%