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OM416779.1__ULF50150.1__PSCSP1u_00025__00025

Bact-Vir

OM416779.1__ULF50150.1__PSCSP1u_00025__00025

Identity

Accession:
OM416779 ↗
Kingdom:
phage

Quality

84.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Prochlorococcus_phage_P-SCSP1u

TaxID: 2914505

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-140
PDB
Domain cluster: rep: MN018232.1__QDH50655.1__X__00189__D210-318
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1qexA03 2.60.40.1680 Mainly Beta › Sandwich › Immunoglobulin-like › 4-oxalocrotonate tautomerase-like 0.74 61.0 6.39e-01 100.0% 96.5%
4i0wD02 2.60.120.1290 Mainly Beta › Sandwich › Jelly Rolls › 0.72 55.0 5.49e-01 100.0% 76.2%
6cl5A01 2.60.40.3940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.65 42.0 4.56e-01 100.0% 79.4%
1eajB00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 48.0 4.88e-01 100.0% 85.0%
2vm9A02 2.60.40.2080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 41.0 4.53e-01 100.0% 87.8%
2qomB00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.61 49.0 3.82e-01 86.3% 97.8%
2jlpB00 2.60.40.200 Mainly Beta › Sandwich › Immunoglobulin-like › Superoxide dismutase, copper/zinc binding domain 0.60 44.0 4.06e-01 77.4% 94.0%
4indA02 2.60.120.1310 Mainly Beta › Sandwich › Jelly Rolls › 0.59 48.0 5.11e-01 100.0% 96.4%
4b96A00 2.60.40.710 Mainly Beta › Sandwich › Immunoglobulin-like › Endoglucanase-like 0.58 43.0 4.07e-01 100.0% 63.6%
1m06G00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.58 53.0 4.60e-01 100.0% 71.1%
1fx5B00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 52.0 4.20e-01 100.0% 97.9%
2vecA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 37.0 3.80e-01 100.0% 66.1%
2bpa200 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.57 53.0 4.67e-01 100.0% 72.0%
7q61A01 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 39.0 4.13e-01 100.0% 80.7%
3q9oA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 51.0 4.22e-01 98.4% 79.2%
1ikpA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 50.0 4.14e-01 98.4% 74.4%
2crmA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 32.0 3.85e-01 98.4% 89.9%
1pgl100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.54 50.0 4.34e-01 100.0% 85.9%
6lofA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.54 44.0 3.99e-01 86.3% 69.8%
6mrmC01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 48.0 4.35e-01 100.0% 91.7%
4kq7A01 2.60.120.1390 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF2961 0.53 49.0 4.47e-01 100.0% 83.3%
5z5dA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 48.0 4.10e-01 100.0% 98.0%
2i9dA00 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.53 45.0 3.81e-01 94.4% 93.4%
6gdxA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 32.0 3.46e-01 91.1% 71.0%
1lshA01 2.30.230.10 Mainly Beta › Roll › Lipovitellin-phosvitin complex; beta-sheet shell regions › Lipovitellin; beta-sheet shell regions, chain A 0.52 40.0 3.20e-01 81.5% 91.6%
1tlyA00 2.40.230.20 Mainly Beta › Beta Barrel › Outer membrane phospholipase (ompla); Chain C › Nucleoside-specific channel-forming protein, Tsx-like 0.52 44.0 3.47e-01 90.3% 74.1%
3ne5C02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.52 37.0 3.98e-01 100.0% 88.2%
5w17A01 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.52 38.0 3.61e-01 76.6% 72.0%
4es8B01 2.60.120.1240 Mainly Beta › Sandwich › Jelly Rolls › 0.52 47.0 4.05e-01 100.0% 94.4%
4llfD01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.52 47.0 4.17e-01 100.0% 87.6%
1h7zA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.52 46.0 3.99e-01 97.6% 92.7%
2j2jA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.52 47.0 4.13e-01 100.0% 96.2%
1w99A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 46.0 4.04e-01 100.0% 82.2%
1j2vA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 31.0 3.42e-01 90.3% 74.3%
1wkyA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 46.0 4.43e-01 100.0% 96.5%
6jhsA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.51 46.0 3.62e-01 100.0% 60.8%
4fprB00 3.30.70.2910 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 38.0 3.77e-01 91.1% 75.8%
2ww8A02 2.60.40.2110 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 44.0 3.86e-01 99.2% 99.0%
1yqzA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.50 36.0 3.80e-01 77.4% 86.1%
4fx9A03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.50 35.0 3.69e-01 78.2% 80.5%
2wstA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.50 44.0 3.91e-01 96.0% 90.9%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3609844 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.70 64.0 6.04e-01 100.0% 92.7%
3862309 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.69 51.0 4.47e-01 100.0% 53.3%
5013259 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.68 52.0 5.26e-01 100.0% 79.2%
3414212 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.68 52.0 5.40e-01 100.0% 85.2%
1066946 11.1.5.8 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › CBM_3 0.67 50.0 4.49e-01 100.0% 56.5%
1948618 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.67 49.0 5.28e-01 100.0% 88.0%
4063161 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.66 46.0 5.21e-01 100.0% 92.6%
4944855 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.66 45.0 5.17e-01 100.0% 96.7%
4107581 11.1.5.8 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › CBM_3 0.65 45.0 4.14e-01 100.0% 55.0%
2581320 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 56.0 5.60e-01 100.0% 95.2%
3591145 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.63 49.0 5.16e-01 100.0% 90.9%
3611129 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.63 50.0 5.27e-01 99.2% 93.6%
4932993 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 38.0 4.31e-01 91.1% 82.1%
5053826 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.61 47.0 5.03e-01 100.0% 90.9%
3596678 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.61 50.0 5.32e-01 98.4% 98.2%
4990898 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.60 43.0 4.78e-01 100.0% 96.8%
5069244 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 42.0 4.40e-01 100.0% 78.3%
5058946 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.60 45.0 4.87e-01 100.0% 93.3%
5035459 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.59 39.0 4.51e-01 100.0% 96.5%
5074352 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.59 46.0 5.00e-01 100.0% 96.2%
5050287 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.59 41.0 4.60e-01 95.2% 97.8%
3341168 4178.1.1.0 ↗ beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain 0.59 47.0 4.34e-01 87.9% 92.1%
3543937 11.1.1.297 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Integrin_A_Ig_2 0.58 40.0 3.85e-01 100.0% 60.7%
4623622 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.58 40.0 4.49e-01 100.0% 92.6%
3659764 11.2.1.17 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › NT-C2 0.57 43.0 3.99e-01 79.8% 72.5%
3914225 10.32.1.283 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › TGFb_propeptide 0.57 44.0 4.30e-01 99.2% 75.6%
3786014 10.32.1.237 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Mid1 0.56 52.0 5.04e-01 100.0% 97.1%
4980801 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 45.0 4.85e-01 100.0% 99.0%
3623050 10.32.1.213 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF25883 0.56 45.0 4.68e-01 98.4% 91.3%
3212135 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.55 42.0 3.84e-01 80.6% 69.1%
3453917 4178.1.1.0 ↗ beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain 0.55 44.0 4.12e-01 87.1% 91.6%
3801208 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.55 42.0 3.82e-01 80.6% 69.1%
5010985 10.1.1.117 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Thermopsin 0.55 49.0 3.76e-01 100.0% 70.3%
4982351 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.54 47.0 4.78e-01 100.0% 95.0%
3753092 11.2.1.76 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PF28335 0.54 41.0 3.76e-01 79.8% 71.3%
3712933 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.54 41.0 3.93e-01 79.8% 74.5%
3971633 5084.6.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Tsx-like channel › Tsx-like channel › Channel_Tsx 0.54 40.0 3.29e-01 78.2% 99.6%
1412423 10.32.1.72 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › TPPII_GBD 0.54 47.0 4.66e-01 100.0% 92.1%
3458656 11.2.1.37 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF6598 0.53 40.0 3.92e-01 79.8% 71.4%
3758246 11.1.1.298 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Integrin_A_Ig_3 0.53 48.0 4.04e-01 100.0% 81.9%
3754279 11.1.1.239 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG3 0.53 39.0 3.98e-01 100.0% 79.2%
1070876 10.2.1.89 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › PF28589 0.53 49.0 4.46e-01 100.0% 82.8%
3542698 11.2.1.114 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2, C2-C2_1 0.53 40.0 3.00e-01 80.6% 32.1%
3990462 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.53 40.0 3.71e-01 80.6% 66.3%
3616878 11.2.1.9 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2-C2_1 0.52 40.0 3.85e-01 81.5% 70.3%
3502327 10.32.1.213 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF25883 0.52 45.0 4.63e-01 98.4% 95.8%
3276320 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.52 39.0 3.93e-01 81.5% 96.2%
3661818 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 39.0 4.10e-01 91.1% 90.0%
3389074 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.51 38.0 3.58e-01 91.9% 62.6%
3913959 10.1.1.10 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.51 46.0 4.29e-01 100.0% 95.6%
3546691 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.51 40.0 4.06e-01 84.7% 96.7%
3782867 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.51 37.0 3.70e-01 80.6% 72.3%
3751478 220.1.1.86 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.51 30.0 3.76e-01 78.2% 97.3%
5040615 10.1.2.183 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PPC 0.51 44.0 4.47e-01 100.0% 96.8%
3923821 11.2.1.9 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2-C2_1 0.51 39.0 3.68e-01 81.5% 68.0%
3806972 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.51 45.0 3.25e-01 99.2% 47.0%
3248718 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.51 37.0 3.71e-01 79.8% 73.8%
4496866 11.2.1.9 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2-C2_1 0.51 36.0 3.33e-01 74.2% 60.0%
5033433 244.2.1.1 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Pyr_redox_dim 0.50 36.0 3.65e-01 77.4% 73.4%
5071561 4252.1.1.12 ↗ beta barrels › AttH-like › AttH-like › AttH-like › DUF7064 0.50 46.0 4.12e-01 100.0% 95.9%
147643 522.1.1.1 ↗ a+b two layers › Bacteriochlorophyll A protein › Bacteriochlorophyll A protein › Bacteriochlorophyll A protein › BChl_A 0.50 38.0 2.78e-01 79.8% 49.4%
3423177 10.1.1.58 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Neprosin 0.50 44.0 3.63e-01 99.2% 73.8%
3805853 10.32.1.192 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › C-JID 0.50 45.0 3.90e-01 100.0% 65.1%