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OM416779.1__ULF50162.1__PSCSP1u_00037__00037

Bact-Vir

OM416779.1__ULF50162.1__PSCSP1u_00037__00037

Identity

Accession:
OM416779 ↗
Kingdom:
phage

Quality

93.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Prochlorococcus_phage_P-SCSP1u

TaxID: 2914505

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-54
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ywyA00 3.40.1170.40 Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › Protein of unknown function DUF3203 0.61 41.0 3.64e-01 81.6% 47.3%
2jrbA00 3.30.250.20 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › L1 transposable element, C-terminal domain 0.57 45.0 4.20e-01 93.9% 70.8%
3aeiA00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.57 44.0 3.53e-01 91.8% 43.6%
1xkpC00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.57 44.0 3.45e-01 93.9% 83.3%
4gf3A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.56 47.0 3.63e-01 100.0% 80.5%
1b5eA00 3.30.572.10 Alpha Beta › 2-Layer Sandwich › Thymidylate Synthase; Chain A › Thymidylate synthase/dCMP hydroxymethylase domain 0.56 43.0 2.85e-01 89.8% 88.0%
2uz8A01 3.40.30.90 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.56 47.0 4.60e-01 98.0% 90.7%
1pmtA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 43.0 3.70e-01 100.0% 70.2%
1br2A04 1.20.58.530 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 43.0 3.11e-01 100.0% 28.7%
4kv7A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.54 43.0 3.19e-01 100.0% 87.9%
3tqtA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.54 31.0 2.83e-01 83.7% 32.4%
3weoA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.53 43.0 2.72e-01 100.0% 40.6%
2ej9A01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.53 42.0 2.97e-01 95.9% 43.1%
4qarA00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.52 41.0 2.93e-01 100.0% 76.4%
1hxdA03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 38.0 4.05e-01 81.6% 100.0%
3f0zA01 3.30.310.260 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.51 41.0 3.32e-01 100.0% 57.1%
3q9oA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 42.0 2.77e-01 93.9% 64.8%
2eayB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 40.0 4.05e-01 93.9% 100.0%
1t3qB04 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.50 40.0 2.76e-01 91.8% 84.5%
1f44A01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.50 40.0 2.82e-01 98.0% 63.9%
1ffvB04 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.50 40.0 2.77e-01 93.9% 82.8%
7kw8A01 1.10.10.970 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RNA 2'-phosphotransferase, Tpt1/KptA family, N-terminal domain 0.50 39.0 3.48e-01 87.8% 69.9%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3583551 386.1.1.71 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › SURF2 0.67 52.0 4.79e-01 100.0% 64.6%
3790093 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.67 58.0 3.34e-01 100.0% 11.2%
3932457 2005.1.1.7 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d 0.67 58.0 3.60e-01 100.0% 19.0%
4935756 242.2.1.0 ↗ a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like 0.67 44.0 4.21e-01 79.6% 60.0%
5055783 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.64 43.0 3.50e-01 81.6% 37.8%
3929201 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.63 43.0 4.36e-01 91.8% 73.5%
4928472 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.63 42.0 3.65e-01 81.6% 43.8%
3277161 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.61 48.0 3.75e-01 100.0% 38.3%
3250378 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.59 45.0 4.37e-01 100.0% 76.7%
3806421 247.1.1.38 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C 0.58 47.0 4.42e-01 100.0% 96.9%
5066058 7571.1.1.1 ↗ a/b three-layered sandwiches › Formyltransferase › Formyltransferase › Formyltransferase › Formyl_trans_N 0.58 43.0 2.85e-01 85.7% 47.2%
3326520 331.23.1.7 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF73-100_C 0.57 47.0 4.22e-01 100.0% 85.3%
4972215 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.57 43.0 2.88e-01 83.7% 19.5%
4287508 241.1.1.3 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › CesT 0.57 44.0 3.47e-01 95.9% 81.5%
139279 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.57 44.0 3.53e-01 91.8% 43.6%
4666900 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.56 42.0 3.15e-01 95.9% 32.0%
235805 241.1.1.3 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › CesT 0.56 47.0 3.63e-01 100.0% 80.5%
3603208 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.56 42.0 3.76e-01 100.0% 57.1%
3937187 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.56 42.0 3.24e-01 93.9% 36.4%
4025452 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.56 41.0 3.18e-01 95.9% 34.8%
3675304 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.55 41.0 3.11e-01 95.9% 33.3%
3299775 206.1.1.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.55 45.0 2.84e-01 100.0% 26.8%
4353619 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.55 44.0 3.71e-01 100.0% 72.7%
4048893 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.54 35.0 3.12e-01 89.8% 45.7%
5031480 283.1.1.1 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Peptidase_M24 0.54 41.0 2.74e-01 100.0% 18.0%
3388785 109.1.1.11 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › Arc1p_N_like 0.54 44.0 3.12e-01 98.0% 28.5%
3897880 3935.1.1.1 ↗ extended segments › 4E-BP2 › 4E-BP2 › 4E-BP2 › eIF_4EBP 0.53 35.0 3.46e-01 85.7% 61.8%
4945288 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 39.0 4.11e-01 85.7% 95.3%
4960634 3755.3.1.127 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › NFACT_N 0.53 38.0 2.78e-01 81.6% 41.3%
5051446 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.53 40.0 3.02e-01 89.8% 51.4%
1874079 231.1.1.2 ↗ a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › Molybdenum cofactor-binding domain › MoCoBD_2 0.52 43.0 2.64e-01 100.0% 13.0%
4599436 231.1.1.3 ↗ a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › Molybdenum cofactor-binding domain › MoCoBD_1, MoCoBD_2 0.52 44.0 2.48e-01 100.0% 7.4%
5061220 231.1.1.2 ↗ a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › Molybdenum cofactor-binding domain › MoCoBD_2 0.52 44.0 2.70e-01 100.0% 35.9%
4013258 301.8.1.3 ↗ a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase › AASDHPPT_N 0.51 42.0 3.23e-01 100.0% 56.2%
3394225 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.51 37.0 2.91e-01 98.0% 34.8%
3788761 2007.2.3.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II 0.50 36.0 2.46e-01 100.0% 18.3%
3903603 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.50 36.0 3.25e-01 95.9% 53.3%
3964033 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.50 37.0 3.76e-01 85.7% 100.0%