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OM416780.1__ULF50169.1__PSCSP2_00006__00006

Bact-Vir

OM416780.1__ULF50169.1__PSCSP2_00006__00006

Identity

Accession:
OM416780 ↗
Kingdom:
phage

Quality

92.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-55
PDB
Domain cluster: representative
CATH (57)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2e9xA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.90 84.0 5.98e-01 100.0% 38.3%
1p49A02 1.10.287.550 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.88 83.0 7.69e-01 100.0% 84.7%
1hr5A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.87 78.0 7.92e-01 98.0% 100.0%
1vq8V00 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.86 79.0 7.13e-01 100.0% 75.4%
1kfdA02 1.20.1060.10 Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 0.85 77.0 6.76e-01 100.0% 74.6%
1lrzA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.84 76.0 6.98e-01 100.0% 80.6%
3a8pA02 6.10.140.680 Special › Helix non-globular › Helix Hairpins › 0.84 66.0 4.96e-01 100.0% 36.8%
3l1nA01 6.10.140.790 Special › Helix non-globular › Helix Hairpins › 0.81 66.0 6.59e-01 100.0% 88.2%
2bbwA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.81 53.0 3.37e-01 83.7% 15.0%
3nymA00 6.10.290.10 Special › Helix non-globular › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.81 71.0 5.29e-01 100.0% 79.8%
1gqeA01 1.20.58.410 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Release factor 0.81 71.0 5.43e-01 100.0% 43.4%
2kw6A00 6.10.140.1300 Special › Helix non-globular › Helix Hairpins › 0.80 70.0 6.31e-01 98.0% 72.3%
3agtA00 1.20.120.50 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like 0.77 66.0 4.91e-01 100.0% 36.8%
4e4eA01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.77 68.0 6.03e-01 100.0% 70.4%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.77 68.0 6.02e-01 100.0% 69.0%
2y44A00 1.20.1260.80 Mainly Alpha › Up-down Bundle › Ferritin › 0.77 68.0 4.60e-01 100.0% 31.5%
4gzrC00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.77 66.0 6.13e-01 95.9% 91.8%
1wtyA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.77 68.0 5.14e-01 100.0% 56.0%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.76 64.0 5.19e-01 100.0% 76.5%
3nbxX03 1.20.58.1510 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.75 64.0 5.13e-01 100.0% 53.5%
1i5nB00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.75 63.0 4.81e-01 100.0% 40.3%
1rv2D04 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.74 63.0 5.70e-01 100.0% 80.0%
4dvyP03 1.20.120.1270 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CagA exotoxin domain III 0.74 63.0 4.37e-01 95.9% 28.7%
4u7iA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.73 63.0 5.17e-01 100.0% 59.1%
2vy1A00 1.10.4180.10 Mainly Alpha › Orthogonal Bundle › Protein LEAFY › Protein LEAFY 0.73 66.0 4.49e-01 100.0% 56.4%
2odmA00 1.10.287.750 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like 0.72 60.0 5.28e-01 100.0% 62.0%
2uv8A07 6.10.140.1410 Special › Helix non-globular › Helix Hairpins › 0.72 63.0 5.22e-01 98.0% 80.0%
4h63H01 1.20.58.1710 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.71 59.0 5.35e-01 100.0% 68.1%
1gnlA01 1.20.1270.20 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.71 59.0 4.37e-01 98.0% 34.5%
2e62A01 6.10.140.420 Special › Helix non-globular › Helix Hairpins › 0.70 58.0 5.78e-01 93.9% 98.1%
4l0rB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 58.0 5.26e-01 100.0% 83.6%
1grjA01 1.10.287.180 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain 0.70 58.0 5.19e-01 100.0% 71.6%
5jc3A02 1.20.1320.30 Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › 0.69 63.0 4.57e-01 100.0% 49.2%
5lnkA00 1.20.58.1610 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 0.69 58.0 4.52e-01 100.0% 43.5%
1cpyA02 1.10.287.410 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.68 57.0 5.14e-01 100.0% 69.4%
2yxyA01 1.10.287.880 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Hypothetical protein YfhH domain 0.68 53.0 5.29e-01 87.8% 86.0%
4errB00 1.20.58.1190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 57.0 4.93e-01 100.0% 66.3%
2p4vA01 1.10.287.180 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain 0.68 55.0 4.94e-01 100.0% 69.7%
1wa8A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.67 53.0 4.37e-01 100.0% 46.5%
1luwA01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.66 56.0 5.19e-01 100.0% 79.7%
3k6qA02 3.30.160.620 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.65 52.0 4.28e-01 87.8% 61.8%
2pjqA01 1.10.472.50 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like 0.65 49.0 4.08e-01 81.6% 46.1%
1z0pA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 53.0 4.76e-01 98.0% 89.0%
4q5nA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.64 52.0 4.19e-01 100.0% 44.6%
5fhiA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.64 51.0 3.93e-01 100.0% 40.3%
4rngC00 1.20.1280.290 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.64 55.0 4.69e-01 100.0% 67.5%
1is8A01 1.10.286.10 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › GTP cyclohydrolase I, N-terminal domain 0.64 46.0 4.36e-01 77.6% 70.0%
2ds2D01 1.10.110.10 Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins 0.64 48.0 4.60e-01 85.7% 71.9%
6tkvA01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.63 50.0 4.71e-01 100.0% 75.0%
2oxlA00 1.20.5.5260 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.63 50.0 4.60e-01 85.7% 93.5%
2vkzA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.63 55.0 3.45e-01 100.0% 21.0%
2qbyB01 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.62 39.0 3.10e-01 77.6% 30.4%
1bm9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 50.0 3.84e-01 95.9% 84.2%
3v5uA01 6.10.280.80 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › NCX, peripheral helical region 0.60 51.0 4.48e-01 100.0% 65.8%
3lphC00 6.10.140.630 Special › Helix non-globular › Helix Hairpins › 0.59 50.0 4.84e-01 100.0% 86.2%
2hoqA02 1.10.150.520 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.59 51.0 4.44e-01 100.0% 98.7%
1v66A00 1.10.720.30 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain 0.50 41.0 3.82e-01 93.9% 80.0%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3599499 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.94 87.0 5.94e-01 100.0% 32.7%
3608116 5086.1.1.177 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › KIF9 0.94 87.0 5.97e-01 100.0% 33.8%
3938192 633.22.1.0 alpha bundles › Bromodomain-like › Vitamin K epoxide reductase (VKOR) › Vitamin K epoxide reductase (VKOR) 0.93 75.0 5.03e-01 100.0% 26.2%
3633621 192.5.1.16 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › PF26729 0.92 86.0 7.10e-01 100.0% 66.3%
3797912 109.4.1.128 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MIF4G_like_2 0.91 83.0 5.16e-01 100.0% 20.4%
3354385 3755.1.1.22 alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related › DUF3475 0.89 79.0 5.11e-01 100.0% 23.9%
4055485 192.4.1.1 alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 0.88 82.0 7.12e-01 100.0% 70.0%
3424167 3826.1.1.84 alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › DUF7797 0.86 76.0 6.34e-01 100.0% 58.7%
3784740 3712.1.1.1 a+b complex topology › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Med11 0.86 77.0 6.66e-01 100.0% 74.7%
3186867 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.86 76.0 5.20e-01 100.0% 30.3%
3583102 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.85 76.0 6.42e-01 100.0% 61.3%
3211184 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.85 75.0 6.06e-01 98.0% 54.4%
5057676 192.4.1.1 alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 0.85 78.0 6.65e-01 100.0% 65.3%
3167929 192.4.1.0 alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.84 75.0 6.67e-01 100.0% 70.0%
3482601 2496.1.1.0 a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like 0.84 68.0 4.44e-01 100.0% 23.3%
5027732 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.84 74.0 6.56e-01 98.0% 79.7%
3770021 603.1.1.1 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin 0.84 75.0 4.84e-01 100.0% 41.0%
4943798 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.83 73.0 4.70e-01 100.0% 45.0%
3192129 3755.1.1.0 alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related 0.83 72.0 4.73e-01 100.0% 23.8%
3578466 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.83 72.0 6.13e-01 98.0% 68.8%
3674753 192.1.1.23 alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › DUF3493 0.82 72.0 6.43e-01 100.0% 80.0%
3373319 5059.1.1.8 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › Mg_trans_NIPA 0.81 71.0 4.78e-01 100.0% 27.8%
4784164 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.80 70.0 6.26e-01 100.0% 70.0%
3743830 3911.1.1.1 extended segments › Exosome complex protein LRP1 › Exosome complex protein LRP1 › Exosome complex protein LRP1 › Sas10_Utp3 0.79 67.0 5.57e-01 100.0% 55.6%
4939264 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.79 68.0 6.13e-01 100.0% 85.7%
5054852 3636.1.1.0 a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain 0.78 64.0 4.61e-01 95.9% 33.8%
3551874 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.78 65.0 4.26e-01 89.8% 23.8%
5043711 3636.1.1.0 a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain 0.77 66.0 4.87e-01 100.0% 37.6%
3686877 5069.1.1.7 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_B561 0.76 66.0 4.30e-01 100.0% 67.9%
5002748 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.75 67.0 5.80e-01 100.0% 100.0%
4026983 604.1.1.135 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF155 0.75 66.0 4.25e-01 100.0% 22.3%
3437734 192.4.1.0 alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.75 58.0 5.35e-01 85.7% 70.8%
5083225 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.73 57.0 5.28e-01 87.8% 98.5%
4960168 3877.1.1.0 alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC 0.73 60.0 4.29e-01 100.0% 30.3%
3283254 192.22.1.0 alpha bundles › Long alpha-hairpin › Ral binding domain of RLIP76 › Ral binding domain of RLIP76 0.73 60.0 6.03e-01 95.9% 100.0%
3188573 5010.1.1.0 extended segments › Bacterial aa3 type cytochrome c oxidase subunit IV › Bacterial aa3 type cytochrome c oxidase subunit IV › Bacterial aa3 type cytochrome c oxidase subunit IV 0.70 61.0 5.76e-01 100.0% 81.7%
3423908 6155.1.1.0 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.70 58.0 4.75e-01 100.0% 49.5%
3396129 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.70 59.0 4.10e-01 100.0% 85.1%
3745853 603.2.1.1 alpha bundles › STAT-like › STAT › STAT › STAT_alpha 0.67 54.0 3.79e-01 100.0% 25.9%
4025 150.5.1.1 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › WXG100 0.67 53.0 4.37e-01 100.0% 46.5%
5050359 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.67 56.0 5.07e-01 100.0% 71.4%
3975557 3782.1.1.0 a+b duplicates or obligate multimers › Envelope glycoprotein GP2-related › Envelope glycoprotein GP2-related › Envelope glycoprotein GP2-related 0.65 52.0 4.93e-01 98.0% 100.0%
4426201 5076.1.1.1 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.62 51.0 3.17e-01 100.0% 21.3%
3489475 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.52 47.0 4.42e-01 100.0% 85.0%