←Back to structures

OM418627.1__UNA07272.1__CPT_lambdah434imm21_027__00027

Bact-Vir

OM418627.1__UNA07272.1__CPT_lambdah434imm21_027__00027

Identity

Accession:
OM418627 ↗
Kingdom:
phage

Quality

81.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lambdavirus› Escherichia_phage_Lambda_h434_imm21

TaxID: 2918896

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 23-106_173-223
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF13678.13 best Peptidase_M85 108.6 5.70e-31 63.0% 33.1%
PF13678.13 Peptidase_M85 86.4 3.60e-24 39.3% 19.9%
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1td6A03 1.10.472.40 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Hypothetical protein mg237 homolog; domain 3 0.58 38.0 4.43e-01 80.7% 96.7%
5ermB00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.55 45.0 3.47e-01 88.1% 91.4%
7dluA01 1.10.287.1260 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 33.0 3.68e-01 85.9% 76.2%
6hwjA01 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.53 45.0 3.76e-01 93.3% 75.0%
1tj7A01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.52 37.0 4.09e-01 74.1% 98.1%
5xs2B02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.51 40.0 4.09e-01 83.7% 93.9%
1jnrA03 1.20.58.100 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain 0.51 28.0 2.99e-01 87.4% 57.9%
1ynbA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.51 34.0 3.22e-01 84.4% 55.1%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1143455 2498.1.1.44 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M85 1.00 98.0 7.49e-01 100.0% 77.3%
4832296 2498.1.1.44 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M85 0.98 82.0 6.53e-01 85.2% 77.6%
4418048 1075.1.1.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain 0.51 42.0 3.73e-01 88.1% 81.0%
D2 medium residues 107-172_224-272
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF13678.13 best Peptidase_M85 77.8 1.50e-21 58.3% 26.3%
PF13678.13 Peptidase_M85 51.9 1.20e-13 44.4% 19.5%
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ba0A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 27.0 3.00e-01 80.0% 65.5%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1143455 2498.1.1.44 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M85 0.98 96.0 7.01e-01 100.0% 63.8%
4832296 2498.1.1.44 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M85 0.94 90.0 6.87e-01 100.0% 71.1%