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OM439671.1__UKM36347.1__VBSAUS832_19__00019

Bact-Vir

OM439671.1__UKM36347.1__VBSAUS832_19__00019

Identity

Accession:
OM439671 ↗
Kingdom:
phage

Quality

81.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Dubowvirus› Staphylococcus_phage_vB_SauS_832

TaxID: 2914851

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-48
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6fucA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.62 45.0 3.71e-01 80.9% 43.0%
8ckpA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.58 43.0 2.75e-01 85.1% 29.8%
3slzA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.58 40.0 3.19e-01 76.6% 93.0%
3oajA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.57 42.0 3.00e-01 78.7% 26.4%
3p2mA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 42.0 2.67e-01 83.0% 24.6%
7ob9B02 3.90.1800.10 Alpha Beta › Alpha-Beta Complex › DCoH-like › RNA polymerase alpha subunit dimerisation domain 0.56 38.0 3.08e-01 80.9% 33.3%
1r94A00 2.60.300.12 Mainly Beta › Sandwich › Hypothetical Protein Aq_1857; Chain: A; › HesB-like domain 0.56 43.0 3.59e-01 93.6% 45.4%
5vmzA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.56 33.0 3.50e-01 87.2% 59.0%
3qwuA01 3.10.450.740 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 43.0 4.37e-01 100.0% 85.1%
3o27B00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.55 39.0 3.74e-01 72.3% 70.2%
1upsA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 43.0 3.32e-01 100.0% 49.6%
3rv0B03 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 37.0 3.29e-01 76.6% 69.6%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 35.0 2.88e-01 70.2% 52.4%
6gpkA02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.53 46.0 3.56e-01 100.0% 64.2%
7sz2A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.53 37.0 3.13e-01 76.6% 62.0%
2ljwA00 3.30.428.40 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › Protein of unknown function DUF3067 0.53 45.0 3.54e-01 97.9% 85.6%
1db3A02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.53 45.0 3.45e-01 100.0% 69.0%
4o1sA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.53 43.0 3.07e-01 100.0% 52.9%
4r8tB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 39.0 3.42e-01 80.9% 87.7%
2xi9A02 2.30.30.670 Mainly Beta › Roll › SH3 type barrels. › Thioester domain 0.52 39.0 3.23e-01 89.4% 92.2%
1x0gA00 2.60.300.12 Mainly Beta › Sandwich › Hypothetical Protein Aq_1857; Chain: A; › HesB-like domain 0.52 41.0 3.43e-01 100.0% 52.0%
1ckeA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 38.0 2.59e-01 85.1% 26.4%
3bxwA03 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.52 34.0 3.40e-01 72.3% 74.5%
6bs6B01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 36.0 2.97e-01 76.6% 85.9%
2y9wC00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.50 36.0 2.84e-01 89.4% 86.8%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4438733 4.1.1.178 ↗ beta barrels › SH3 › SH3 › SH3 › ribosomal_L24 0.69 51.0 4.00e-01 83.0% 98.1%
4171942 4.1.1.178 ↗ beta barrels › SH3 › SH3 › SH3 › ribosomal_L24 0.67 49.0 3.86e-01 80.9% 100.0%
3590421 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 43.0 4.68e-01 93.6% 91.4%
3514894 386.1.1.337 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › CCDC174_GRSR 0.66 41.0 4.50e-01 87.2% 96.7%
4929446 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.64 42.0 2.99e-01 100.0% 21.3%
3403636 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 40.0 3.22e-01 72.3% 31.6%
3304083 80.1.1.0 ↗ beta complex topology › HesB-like domain › HesB-like domain › HesB-like domain 0.63 46.0 3.99e-01 83.0% 93.8%
4544724 243.6.1.9 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 0.62 45.0 4.05e-01 83.0% 68.0%
4958959 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.61 41.0 4.18e-01 70.2% 75.6%
3605286 2008.2.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like 0.60 44.0 3.55e-01 80.9% 38.0%
5058522 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.60 40.0 3.84e-01 70.2% 62.1%
5079258 7089.1.1.0 ↗ a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.59 39.0 3.95e-01 89.4% 71.1%
4883194 601.52.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Flagellar hook-associated protein 1 helical domain › Flagellar hook-associated protein 1 helical domain 0.58 45.0 2.96e-01 97.9% 25.1%
5027264 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.58 38.0 3.50e-01 70.2% 51.4%
5030546 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.57 39.0 3.77e-01 72.3% 67.3%
4967811 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.57 39.0 3.70e-01 72.3% 60.0%
3589831 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.57 38.0 3.87e-01 72.3% 73.3%
5076168 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.57 39.0 3.32e-01 72.3% 42.4%
4993775 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.57 39.0 3.82e-01 74.5% 65.5%
5078945 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.57 39.0 3.67e-01 76.6% 61.5%
5040491 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.56 39.0 3.55e-01 76.6% 55.7%
3585826 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 41.0 4.30e-01 89.4% 92.5%
3319016 2007.5.1.17 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › PC-Esterase 0.56 39.0 2.52e-01 76.6% 14.1%
3220832 592.7.1.1 ↗ alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain › GIPC1_GH2 0.56 47.0 3.82e-01 95.7% 60.0%
4966971 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.56 37.0 3.67e-01 72.3% 74.5%
5065699 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.56 37.0 3.80e-01 70.2% 80.0%
4934374 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.56 38.0 3.77e-01 72.3% 74.0%
5081177 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.55 38.0 3.84e-01 70.2% 80.0%
5030713 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.55 38.0 3.61e-01 78.7% 60.0%
4967714 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.55 38.0 3.59e-01 70.2% 61.7%
5072446 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.55 37.0 3.52e-01 70.2% 60.0%
5071519 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.55 37.0 3.51e-01 72.3% 56.9%
5059683 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.54 37.0 3.72e-01 74.5% 72.0%
3483955 386.1.1.6 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › ARS2 0.54 34.0 2.89e-01 93.6% 34.1%
5009280 304.7.1.3 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Pro-kuma_activ 0.54 41.0 3.10e-01 85.1% 86.2%
4955487 1.1.3.1 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MraZ 0.54 36.0 3.64e-01 70.2% 80.0%
5031039 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.54 36.0 3.66e-01 70.2% 82.2%
4929676 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.54 36.0 3.65e-01 70.2% 72.7%
5075777 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.53 36.0 3.71e-01 70.2% 80.0%
3929033 59.1.1.0 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like 0.53 38.0 3.33e-01 80.9% 56.2%
5074248 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.53 36.0 3.52e-01 72.3% 67.3%
3827590 2007.5.1.20 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › PC-Esterase,PMR5N 0.53 43.0 2.64e-01 100.0% 29.7%
5058860 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.52 35.0 3.49e-01 74.5% 67.3%
3400449 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 45.0 3.05e-01 100.0% 70.3%
4992723 1.1.3.1 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MraZ 0.52 35.0 3.52e-01 72.3% 75.6%
4999991 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 35.0 2.79e-01 70.2% 61.7%
3307036 375.1.1.69 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_12 0.51 37.0 3.70e-01 87.2% 76.0%
5065651 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.51 35.0 3.43e-01 78.7% 65.5%
3268750 316.1.1.56 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PF26128 0.51 36.0 2.54e-01 76.6% 21.7%
5013426 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 43.0 2.83e-01 100.0% 95.5%
3627280 331.23.1.0 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.51 34.0 3.08e-01 80.9% 45.3%
4026701 180.1.1.1 ↗ alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 0.50 34.0 2.37e-01 72.3% 18.5%