←Back to structures
OM519319.1__UNI71181.1__P5_0004__00004
Bact-VirOM519319.1__UNI71181.1__P5_0004__00004
Identity
- Accession:
- OM519319 ↗
- Kingdom:
- phage
Quality
68.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 86-163
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4d7rA01 | 1.10.220.20 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › | 0.65 | 46.0 | 4.54e-01 | 73.1% | 85.4% |
| 2da3A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.65 | 38.0 | 4.55e-01 | 75.6% | 95.7% |
| 1le8A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.59 | 35.0 | 4.02e-01 | 76.9% | 86.8% |
| 1x2mA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.58 | 36.0 | 4.07e-01 | 75.6% | 88.9% |
| 2k89A00 | 3.10.20.870 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › PFU (PLAA family ubiquitin binding), C-terminal domain | 0.56 | 37.0 | 3.77e-01 | 82.1% | 67.5% |
| 1ln0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.55 | 38.0 | 3.62e-01 | 70.5% | 95.7% |
| 1d3yB02 | 3.40.1360.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 › | 0.53 | 42.0 | 3.25e-01 | 93.6% | 75.6% |
| 2zuoA08 | 2.30.30.620 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 32.0 | 3.66e-01 | 88.5% | 82.8% |
| 1yuzA02 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.52 | 25.0 | 3.14e-01 | 78.2% | 81.6% |
| 3n28A01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.52 | 38.0 | 3.11e-01 | 79.5% | 72.1% |
| 1wjuA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.51 | 35.0 | 3.27e-01 | 87.2% | 56.0% |
| 1znnA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.50 | 41.0 | 3.02e-01 | 94.9% | 60.0% |
| 2kk8A01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.50 | 32.0 | 3.36e-01 | 85.9% | 69.9% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3495504 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.62 | 37.0 | 4.39e-01 | 79.5% | 94.0% |
| 3889817 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.61 | 37.0 | 3.74e-01 | 78.2% | 58.7% |
| 3478184 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.60 | 37.0 | 3.43e-01 | 79.5% | 47.0% |
| 5019916 | 223.1.1.62 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PocR | 0.55 | 42.0 | 3.21e-01 | 83.3% | 53.2% |
| 3713136 | 3075.1.1.0 ↗ | a+b two layers › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA | 0.54 | 36.0 | 3.94e-01 | 80.8% | 91.7% |
| 4956457 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 33.0 | 3.88e-01 | 82.1% | 98.0% |
| 3834352 | 3075.1.1.0 ↗ | a+b two layers › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA | 0.53 | 36.0 | 2.29e-01 | 83.3% | 12.6% |
| 3882807 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.53 | 38.0 | 3.84e-01 | 88.5% | 75.0% |
| 3238714 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.53 | 33.0 | 3.52e-01 | 85.9% | 71.4% |
| 2140802 | 4356.1.1.0 ↗ | beta complex topology › Coronavirus nsp1 › Coronavirus nsp1 › Coronavirus nsp1 | 0.52 | 35.0 | 3.20e-01 | 70.5% | 76.1% |
| 4930203 | 375.1.1.58 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MCM_OB | 0.52 | 34.0 | 3.97e-01 | 82.1% | 96.4% |
| 3605967 | 3529.1.1.4 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault_4 | 0.52 | 34.0 | 3.51e-01 | 97.4% | 70.7% |
| 4319187 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.51 | 36.0 | 3.51e-01 | 82.1% | 67.1% |
| 5047405 | 101.8.1.4 ↗ | alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f | 0.50 | 40.0 | 2.82e-01 | 89.7% | 27.9% |
| 3512962 | 3075.1.1.1 ↗ | a+b two layers › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › PFU | 0.50 | 36.0 | 3.58e-01 | 82.1% | 73.8% |
| 3931118 | 3075.1.1.1 ↗ | a+b two layers › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › PFU | 0.50 | 34.0 | 3.65e-01 | 83.3% | 86.2% |