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OM519319.1__UNI71193.1__P5_0016__00016

Bact-Vir

OM519319.1__UNI71193.1__P5_0016__00016

Identity

Accession:
OM519319 ↗
Kingdom:
phage

Quality

62.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Aeromonas_phage_P5

TaxID: 2924714

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 250-367
PDB
Domain cluster: representative
D2 high residues 845-936
PDB
Domain cluster: rep: MW073017.1__QPB08539.1__X__00060__D1038-1127
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5kfzA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.76 34.0 3.07e-01 87.0% 31.7%
3gw6D02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 69.0 5.68e-01 100.0% 88.2%
3r4iA02 6.10.140.960 Special › Helix non-globular › Helix Hairpins › 0.62 35.0 4.13e-01 83.7% 83.3%
1qlbA04 3.10.20.820 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.56 30.0 2.99e-01 91.3% 48.9%
3zqmA00 6.10.140.2160 Special › Helix non-globular › Helix Hairpins › 0.56 32.0 3.79e-01 76.1% 86.4%
2oarB00 1.10.1200.120 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Large-conductance mechanosensitive channel, MscL; domain 1 0.54 31.0 2.82e-01 93.5% 43.2%
1rh5A00 1.10.3370.10 Mainly Alpha › Orthogonal Bundle › Preprotein translocase SecY subunit › SecY subunit domain 0.54 47.0 3.10e-01 98.9% 48.3%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 40.0 3.84e-01 89.1% 68.8%
6tdxG01 3.40.1380.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit 0.53 45.0 3.40e-01 91.3% 93.5%
2zdiC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 43.0 3.64e-01 89.1% 62.2%
1fxkC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 42.0 3.73e-01 88.0% 67.7%
7wu7501 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.50 41.0 3.72e-01 89.1% 85.7%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3275547 3240.1.1.1 ↗ alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74 0.87 70.0 6.53e-01 83.7% 92.7%
4033696 3240.1.1.0 ↗ alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein 0.75 68.0 6.26e-01 100.0% 94.2%
3596927 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.63 52.0 3.80e-01 90.2% 86.3%
3998581 304.48.1.4 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Guanylate_cyc 0.60 38.0 2.43e-01 92.4% 14.7%
1033457 3218.1.1.0 ↗ a+b duplicates or obligate multimers › small terminase oligomerization domain › small terminase oligomerization domain › small terminase oligomerization domain 0.56 32.0 3.81e-01 77.2% 87.9%
4951172 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.54 42.0 4.08e-01 85.9% 96.2%
1828346 1063.1.1.1 ↗ alpha complex topology › Tegument protein U14 › Tegument protein U14 › Tegument protein U14 › Herpes_pp85 0.53 44.0 2.87e-01 93.5% 48.9%
3194847 3343.1.1.2 ↗ alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal,GCP_N_terminal 0.53 43.0 2.65e-01 90.2% 34.3%
3268288 5001.1.1.5 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 0.53 39.0 2.77e-01 78.3% 49.1%
3657148 305.1.1.2 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2 0.51 35.0 4.02e-01 80.4% 92.9%
3479321 5001.1.1.41 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.51 43.0 2.91e-01 97.8% 73.5%
D3 medium residues 368-448
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1erzA00 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.58 41.0 2.82e-01 75.3% 28.1%
3rwlA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.53 37.0 2.33e-01 71.6% 75.2%
8sppA01 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.50 40.0 2.63e-01 87.7% 40.8%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3916660 10.4.1.22 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB_CDCP1_2 0.63 46.0 4.05e-01 80.2% 89.2%
3217205 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.61 42.0 3.86e-01 71.6% 92.7%
5004885 2003.6.1.4 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › ADP_PFK_GK 0.55 43.0 2.71e-01 84.0% 40.7%
4390756 311.1.1.1 ↗ a+b three layers › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › PTS_EIIA_2 0.54 39.0 3.18e-01 77.8% 67.9%
3513072 323.1.1.6 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Carn_acyltransf 0.51 40.0 3.10e-01 86.4% 40.5%
5021522 2003.6.1.4 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › ADP_PFK_GK 0.51 38.0 2.45e-01 82.7% 36.2%
7522 323.1.1.6 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Carn_acyltransf 0.50 39.0 2.91e-01 84.0% 33.8%
D4 medium residues 583-636
PDB
D5 medium residues 751-826
PDB