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OM519319.1__UNI71212.1__P5_0035__00035

Bact-Vir

OM519319.1__UNI71212.1__P5_0035__00035

Identity

Accession:
OM519319 ↗
Kingdom:
phage

Quality

58.4 mean pLDDT

Taxonomy

TaxID: 2924714

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 30-76
PDB
Domain cluster: representative
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2b02A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.67 57.0 4.50e-01 100.0% 95.2%
4i43B02 3.30.43.40 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 › Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain 0.66 46.0 3.50e-01 100.0% 30.7%
1p97A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.63 51.0 4.06e-01 100.0% 86.0%
6kf9G01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 50.0 4.39e-01 100.0% 62.2%
4f0qD01 2.30.280.20 Mainly Beta › Roll › PUA domain-like › 0.63 53.0 3.37e-01 100.0% 36.9%
3a0rA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 51.0 4.07e-01 100.0% 85.8%
1mc0A01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.61 53.0 3.70e-01 100.0% 57.6%
1vw4L01 3.90.1030.10 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › Ribosomal protein L17 0.61 47.0 3.44e-01 85.1% 49.6%
1fpqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 48.0 3.71e-01 100.0% 49.6%
3b8pA00 3.30.1890.10 Alpha Beta › 2-Layer Sandwich › Bacterial polysaccharide co-polymerase-like › FepE-like 0.61 52.0 3.42e-01 100.0% 36.7%
4kt5C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 48.0 4.12e-01 100.0% 67.0%
3mtiB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.60 50.0 3.44e-01 100.0% 28.3%
4xrpC01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.59 49.0 3.35e-01 91.5% 85.1%
2xssA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.58 44.0 3.18e-01 87.2% 43.6%
6ztgA01 3.30.70.1070 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat 0.57 45.0 3.96e-01 100.0% 57.3%
2ab5B01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.57 46.0 3.50e-01 100.0% 35.2%
2rvjA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.57 48.0 3.86e-01 100.0% 53.1%
2nraC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 45.0 3.73e-01 100.0% 81.4%
3m05B01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 45.0 3.71e-01 100.0% 46.7%
4o8uA00 3.30.420.440 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF4152 0.56 48.0 3.14e-01 100.0% 57.3%
6fucA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 45.0 3.90e-01 100.0% 65.1%
1zhhB01 3.30.450.220 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › LuxQ periplasmic domain, N-terminal subdomain 0.56 45.0 3.32e-01 100.0% 51.6%
4lrjA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 44.0 4.04e-01 100.0% 75.3%
2bopA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.56 44.0 3.85e-01 100.0% 58.8%
4djbA00 3.30.70.2870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Mastadenovirus E4 ORF3 0.56 40.0 2.99e-01 76.6% 72.0%
4jb9H01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 45.0 3.41e-01 100.0% 52.7%
1repC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 44.0 3.76e-01 100.0% 78.0%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 44.0 3.59e-01 100.0% 58.3%
4qdgA02 2.60.40.2090 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 39.0 2.89e-01 76.6% 32.6%
2gffA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 46.0 3.76e-01 100.0% 53.1%
4gafB03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 46.0 3.57e-01 100.0% 46.4%
1bm9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 42.0 3.39e-01 100.0% 49.2%
1hbxA01 3.40.1810.10 Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box 0.53 40.0 3.55e-01 83.0% 54.9%
3pjvD01 3.30.110.200 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › 0.53 40.0 3.48e-01 91.5% 51.3%
6n2nA01 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.53 42.0 3.02e-01 100.0% 27.0%
2raaA00 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.53 44.0 3.07e-01 100.0% 28.7%
2qrdE01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.53 39.0 2.71e-01 80.9% 88.9%
7n0eB02 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.53 41.0 3.13e-01 100.0% 34.4%
1lk5A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.53 43.0 3.77e-01 100.0% 68.4%
2cpxA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.53 43.0 3.79e-01 100.0% 62.0%
1ug8A00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.52 42.0 3.64e-01 100.0% 63.2%
4lhfA00 6.10.200.10 Special › Helix non-globular › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › Regulatory phage protein Cox 0.52 43.0 3.77e-01 100.0% 62.0%
2ftrA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 42.0 3.44e-01 100.0% 54.4%
2euiA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 42.0 3.09e-01 93.6% 47.9%
1vtnC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 43.0 3.47e-01 100.0% 62.7%
5zwnQ01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.51 42.0 3.68e-01 100.0% 58.7%
1p1tA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.51 41.0 3.37e-01 100.0% 45.2%
3viqA00 6.10.140.1020 Special › Helix non-globular › Helix Hairpins › 0.51 38.0 2.92e-01 83.0% 56.6%
3bzbB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 41.0 2.82e-01 100.0% 39.5%
4q8gA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 42.0 2.59e-01 100.0% 32.3%
4dpoB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 41.0 3.36e-01 97.9% 48.5%
4iufA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.51 41.0 3.64e-01 100.0% 61.0%
2yqzA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 38.0 2.69e-01 91.5% 56.0%
3m86A00 2.60.40.2020 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 42.0 3.31e-01 100.0% 42.3%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5076507 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.68 52.0 3.74e-01 100.0% 27.7%
5082698 101.1.2.914 alpha arrays › HTH › HTH › winged helix domain › DUF6015 0.67 55.0 4.65e-01 100.0% 57.8%
5025980 101.1.2.914 alpha arrays › HTH › HTH › winged helix domain › DUF6015 0.66 53.0 4.52e-01 100.0% 56.7%
4980535 101.1.2.914 alpha arrays › HTH › HTH › winged helix domain › DUF6015 0.65 53.0 4.41e-01 100.0% 53.7%
5028751 304.28.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.65 56.0 4.52e-01 100.0% 51.1%
4995231 101.1.2.914 alpha arrays › HTH › HTH › winged helix domain › DUF6015 0.65 53.0 4.45e-01 100.0% 57.8%
5039496 101.1.2.914 alpha arrays › HTH › HTH › winged helix domain › DUF6015 0.63 51.0 4.34e-01 100.0% 56.7%
3716197 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.63 57.0 4.38e-01 100.0% 57.0%
5080275 101.1.2.914 alpha arrays › HTH › HTH › winged helix domain › DUF6015 0.63 51.0 3.98e-01 100.0% 42.5%
3164764 2008.1.1.168 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF30184 0.63 52.0 4.43e-01 100.0% 72.9%
4981949 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 52.0 4.49e-01 100.0% 67.5%
4221300 304.9.1.109 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PF28459 0.62 54.0 3.89e-01 100.0% 43.7%
3590219 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.62 49.0 4.07e-01 100.0% 47.8%
4950547 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.62 50.0 4.17e-01 100.0% 56.8%
6845 223.1.1.23 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_2 0.61 53.0 3.56e-01 100.0% 48.7%
3482620 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.61 53.0 3.32e-01 100.0% 19.2%
4450606 304.28.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.60 52.0 4.31e-01 100.0% 64.7%
3784212 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 46.0 3.84e-01 100.0% 61.0%
5027566 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 47.0 4.08e-01 100.0% 60.0%
3587356 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.59 46.0 3.81e-01 100.0% 46.7%
3481547 101.1.2.68 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.58 45.0 3.41e-01 100.0% 54.0%
4139696 2003.1.5.46 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS 0.58 41.0 2.65e-01 74.5% 29.3%
3427796 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.58 43.0 3.71e-01 100.0% 46.7%
3507800 246.3.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.57 45.0 2.75e-01 91.5% 52.9%
4883269 304.51.1.5 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Csy4 0.57 48.0 3.93e-01 100.0% 60.0%
4029945 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.57 47.0 3.62e-01 100.0% 44.2%
4446896 328.6.1.1 a+b two layers › IF3-like › EPT/RTPC-like › EPT/RTPC-like › EPSP_synthase 0.56 45.0 2.97e-01 95.7% 40.8%
5068142 2004.1.3.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.56 46.0 3.04e-01 93.6% 76.1%
3587109 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.56 44.0 3.66e-01 100.0% 46.7%
3938245 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.56 45.0 3.04e-01 100.0% 27.1%
4098707 304.159.1.1 a+b two layers › Alpha-beta plaits › Alpha-beta plait domain in NisB › Alpha-beta plait domain in NisB › Lant_dehydr_C 0.56 40.0 3.11e-01 74.5% 65.0%
3498546 304.162.1.2 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › FLAD1_M 0.56 47.0 4.07e-01 100.0% 61.3%
5011307 304.116.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor 0.56 47.0 3.82e-01 100.0% 62.0%
4028975 2003.1.5.69 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GCD14 0.55 45.0 3.09e-01 100.0% 23.6%
5012937 304.116.1.6 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor › acVLRF1 0.55 46.0 3.80e-01 100.0% 66.3%
4946543 2004.1.3.3 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR_N 0.55 44.0 2.95e-01 91.5% 85.1%
5043656 304.116.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor 0.54 46.0 3.75e-01 100.0% 66.3%
4945440 304.116.1.5 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor › DUF460 0.54 45.0 3.66e-01 100.0% 62.0%
1481299 304.5.1.4 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CdAMP_rec 0.54 43.0 3.35e-01 100.0% 38.1%
4945049 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.54 43.0 3.51e-01 100.0% 45.3%
4948091 304.116.1.5 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor › DUF460 0.54 45.0 3.66e-01 100.0% 62.0%
5011607 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 48.0 3.43e-01 100.0% 51.4%
3172621 309.1.1.8 a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_M 0.53 38.0 2.44e-01 76.6% 31.4%
3211626 304.162.1.2 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › FLAD1_M 0.53 44.0 3.75e-01 100.0% 55.3%
5045865 304.116.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor 0.53 41.0 3.29e-01 85.1% 87.4%
3939040 387.1.5.0 few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like 0.52 44.0 4.54e-01 100.0% 100.0%
4945142 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.52 42.0 3.61e-01 100.0% 55.0%
4944788 2004.1.3.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.52 43.0 2.95e-01 100.0% 26.7%
5030026 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.51 40.0 3.41e-01 100.0% 50.0%
3177409 330.1.1.13 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Mgm101p 0.51 38.0 2.83e-01 95.7% 47.3%
D2 medium residues 186-273
PDB