Back to structures

OM634653.1__UNH58486.1__X__00143

Bact-Vir

OM634653.1__UNH58486.1__X__00143

Identity

Accession:
OM634653 ↗
Kingdom:
phage

Quality

82.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 22-82
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fbyA01 2.10.25.10 Mainly Beta › Ribbon › Laminin › Laminin 0.68 31.0 3.48e-01 72.1% 51.1%
3s6xA01 6.20.10.20 Special › Other non-globular › Laminin › 0.54 30.0 2.96e-01 91.8% 46.4%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4504547 377.1.1.6 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.55 32.0 2.30e-01 100.0% 18.4%
3401103 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.54 35.0 3.08e-01 73.8% 41.0%
3518601 389.1.1.0 few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.50 34.0 2.43e-01 95.1% 22.6%
D2 medium residues 92-133
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1j78A05 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.90 73.0 6.49e-01 92.9% 63.3%
2no4A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.89 79.0 6.46e-01 100.0% 72.0%
3vayA02 1.20.120.1600 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.88 73.0 5.64e-01 97.6% 43.7%
1is8A01 1.10.286.10 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › GTP cyclohydrolase I, N-terminal domain 0.84 72.0 6.41e-01 97.6% 80.0%
6fakA02 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.83 69.0 5.60e-01 97.6% 49.4%
3b0cW00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.80 70.0 5.84e-01 100.0% 60.3%
1wgfA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.80 65.0 6.08e-01 95.2% 73.6%
2lo0A00 1.10.286.70 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › Get5 dimerization domain 0.79 63.0 6.25e-01 95.2% 84.4%
1sg7A00 1.10.1740.70 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › ChaB 0.79 67.0 5.66e-01 100.0% 80.0%
2g5gX02 1.10.8.760 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Haem-binding uptake, Tiki superfamily, ChaN, domain 2 0.79 67.0 6.05e-01 97.6% 74.6%
3ermB00 1.10.10.710 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PSPTO_1197 like 0.79 68.0 5.96e-01 100.0% 67.2%
2l09A01 1.10.8.550 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Proto-chlorophyllide reductase 57 kD subunit B 0.79 62.0 5.82e-01 92.9% 71.2%
5u4nA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.79 66.0 3.89e-01 100.0% 84.0%
2dznF00 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.79 64.0 5.48e-01 92.9% 98.6%
2e6oA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.78 67.0 5.29e-01 100.0% 47.1%
3mvpA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.77 61.0 5.87e-01 92.9% 76.6%
4evxA00 1.10.1740.240 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.77 65.0 5.06e-01 100.0% 46.4%
1w5sA01 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.77 60.0 4.74e-01 88.1% 42.0%
3b0bC02 6.10.130.30 Special › Helix non-globular › GTP Cyclohydrolase I; Chain A, domain 1 › 0.76 66.0 6.59e-01 100.0% 97.7%
1gvfB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.76 65.0 3.95e-01 100.0% 88.0%
2mtqA00 1.20.58.130 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.75 52.0 4.25e-01 71.4% 53.4%
5uckB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.72 59.0 3.62e-01 100.0% 88.3%
2yevA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.70 51.0 4.24e-01 81.0% 44.6%
3t69A02 3.30.420.310 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, C-terminal domain 0.69 59.0 3.76e-01 100.0% 44.2%
2aswA00 1.10.8.500 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › HAMP domain in histidine kinase 0.69 44.0 3.99e-01 71.4% 48.2%
1vb3A01 3.90.1380.10 Alpha Beta › Alpha-Beta Complex › threonine synthase, domain 1, chain A › Threonine synthase, N-terminal domain 0.69 49.0 4.08e-01 78.6% 40.7%
2qyuA04 1.10.4140.10 Mainly Alpha › Orthogonal Bundle › effector protein (NleL) fold › effector protein (NleL) 0.69 57.0 3.76e-01 97.6% 99.0%
2d7lA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.68 54.0 5.17e-01 100.0% 77.4%
5zzjA02 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.68 59.0 3.52e-01 100.0% 47.0%
1eljA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.67 55.0 3.67e-01 97.6% 68.9%
2ql2C00 4.10.280.10 Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain 0.67 47.0 4.28e-01 83.3% 55.2%
3nbiA01 1.10.8.1020 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain 0.67 54.0 4.90e-01 92.9% 67.2%
3h36A00 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.66 55.0 4.60e-01 100.0% 62.8%
5ko4A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.65 48.0 3.68e-01 81.0% 61.4%
2v40A02 1.10.300.10 Mainly Alpha › Orthogonal Bundle › Adenylosuccinate Synthetase, subunit A; domain 2 › Adenylosuccinate Synthetase, subunit A, domain 2 0.65 52.0 4.27e-01 95.2% 46.6%
2mpnA00 6.10.140.1340 Special › Helix non-globular › Helix Hairpins › 0.65 47.0 4.09e-01 81.0% 73.5%
4i8oA03 1.10.8.1130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Bacterial toxin RNase RnlA/LsoA, C-terminal Dmd-binding domain 0.64 53.0 4.68e-01 97.6% 64.2%
2nrkA00 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.64 54.0 3.68e-01 100.0% 84.2%
1vfiA00 1.10.246.100 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Vanadium-binding protein 2 0.64 50.0 3.98e-01 100.0% 41.1%
1ihuA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.63 51.0 3.28e-01 100.0% 26.5%
1hwyA01 1.10.287.140 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.63 48.0 4.68e-01 97.6% 78.4%
1knzA01 6.10.280.20 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Rotavirus non-structural protein NSP3, N-terminal domain 0.63 51.0 4.05e-01 100.0% 43.1%
7nafR01 1.10.1200.240 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › 0.63 50.0 4.85e-01 95.2% 80.0%
5n13A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.58 47.0 3.63e-01 100.0% 94.4%
2r18A02 1.10.8.880 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Birnavirus VP3 protein, domain 2 0.57 49.0 4.43e-01 100.0% 76.3%
5c8gB00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.56 44.0 3.42e-01 100.0% 54.7%
1lrzA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 48.0 4.19e-01 97.6% 64.5%
2aa4A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 44.0 3.10e-01 97.6% 51.1%
4okvE00 6.10.140.1890 Special › Helix non-globular › Helix Hairpins › 0.51 42.0 3.76e-01 100.0% 64.6%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3691301 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.93 84.0 5.12e-01 100.0% 31.7%
3199564 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.92 81.0 5.04e-01 97.6% 30.5%
4459611 108.1.1.98 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_5, EF-hand_7 0.91 73.0 5.32e-01 85.7% 36.0%
3234424 108.1.1.96 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_6, EF-hand_7 0.90 71.0 5.63e-01 85.7% 45.0%
3609451 108.1.1.73 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.89 71.0 5.51e-01 85.7% 42.4%
3717850 108.1.1.99 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6, EF-hand_7 0.89 71.0 5.22e-01 85.7% 36.0%
4029618 108.1.1.98 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_5, EF-hand_7 0.89 70.0 4.67e-01 85.7% 24.0%
4870236 367.1.1.2 few secondary structure elements › Insulin-like › Insulin-like › Insulin-like › Ins_beta 0.88 76.0 6.88e-01 95.2% 71.4%
3387896 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.87 72.0 5.99e-01 92.9% 54.3%
4102862 2006.1.4.2 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.86 75.0 5.15e-01 100.0% 30.7%
3064123 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.85 76.0 6.30e-01 100.0% 80.6%
5058151 6026.1.1.0 alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain 0.85 75.0 6.46e-01 100.0% 70.8%
3379763 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.84 74.0 5.90e-01 97.6% 51.2%
3420171 108.1.1.1 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1 0.84 67.0 5.48e-01 92.9% 49.3%
3683998 108.1.1.97 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7 0.83 66.0 4.82e-01 92.9% 33.6%
3324995 108.1.1.28 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6,EF-hand_7 0.83 66.0 5.31e-01 92.9% 46.3%
4045723 5046.1.1.1 extended segments › F-type ATP synthase subunit b › F-type ATP synthase subunit b › F-type ATP synthase subunit b › ATP-synt_B 0.82 69.0 4.62e-01 97.6% 27.3%
3651508 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.82 71.0 6.37e-01 100.0% 73.3%
985418 148.1.1.16 alpha arrays › Histone-like › Histone-related › Histone › CENP-W 0.82 71.0 5.86e-01 97.6% 58.9%
3616295 148.1.1.0 alpha arrays › Histone-like › Histone-related › Histone 0.81 68.0 5.40e-01 95.2% 83.5%
3829517 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.81 64.0 5.53e-01 92.9% 56.9%
3656425 108.1.1.29 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 0.81 64.0 5.15e-01 92.9% 46.3%
3687491 129.1.1.82 alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › Aa_trans 0.80 67.0 4.84e-01 100.0% 34.1%
3591291 1076.1.1.1 alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Rce1-like 0.78 64.0 4.16e-01 97.6% 20.6%
3420477 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 64.0 4.66e-01 100.0% 33.1%
3461263 386.1.1.3 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-TRAF 0.78 65.0 4.50e-01 95.2% 28.6%
3844868 6088.1.1.2 alpha arrays › Helical bundle domain in elongation factor 3A › Helical bundle domain in elongation factor 3A › Helical bundle domain in elongation factor 3A › PF26051 0.78 63.0 5.33e-01 95.2% 56.0%
3279519 191.1.1.0 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.77 65.0 4.74e-01 100.0% 36.7%
3278955 6169.1.1.0 extended segments › Transmembrane segment of lysosome-associated membrane glycoprotein 2 › Transmembrane segment of lysosome-associated membrane glycoprotein 2 › Transmembrane segment of lysosome-associated membrane glycoprotein 2 0.77 61.0 6.19e-01 97.6% 95.0%
5023752 148.1.1.4 alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF 0.76 63.0 5.28e-01 95.2% 56.0%
4327967 2002.1.1.50 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › F_bP_aldolase 0.76 64.0 3.92e-01 100.0% 87.7%
3693609 148.1.1.4 alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF 0.76 65.0 5.51e-01 100.0% 60.3%
4981972 604.4.1.0 alpha bundles › Spectrin repeat-like › Alpha-hemoglobin stabilizing protein AHSP › Alpha-hemoglobin stabilizing protein AHSP 0.73 61.0 5.08e-01 100.0% 53.8%
5050058 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.73 56.0 3.73e-01 88.1% 21.7%
4945681 103.12.1.0 alpha arrays › RuvA-C › ANTAR domain › ANTAR domain 0.72 57.0 5.34e-01 92.9% 74.5%
5058468 5058.1.1.0 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.71 59.0 4.92e-01 97.6% 53.3%
5053903 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 59.0 4.35e-01 100.0% 36.7%
3491303 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.70 59.0 4.55e-01 95.2% 89.5%
3580117 192.4.1.0 alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.69 58.0 4.88e-01 97.6% 61.3%
3506491 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.69 56.0 4.42e-01 100.0% 45.0%
4060070 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.68 54.0 4.58e-01 97.6% 56.2%
3260418 5043.1.1.0 extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like 0.68 53.0 4.78e-01 95.2% 67.7%
4007791 1075.5.1.8 alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › Polysacc_synt_3 0.67 54.0 3.38e-01 100.0% 73.7%
171404 101.11.1.0 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 0.66 55.0 4.60e-01 100.0% 62.8%
3388285 1075.3.1.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 0.65 56.0 3.41e-01 100.0% 16.6%
5010630 6132.1.1.0 alpha bundles › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain 0.64 51.0 4.64e-01 100.0% 66.2%
4050022 101.35.1.4 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.64 51.0 4.80e-01 95.2% 72.7%
3308167 7020.1.1.0 few secondary structure elements › Influenza A M2 transmembrane domain › Influenza A M2 transmembrane domain › Influenza A M2 transmembrane domain 0.64 54.0 5.35e-01 100.0% 93.3%
3996657 4979.2.1.1 alpha arrays › C-terminal domain of Hypothetical protein MPN330-like › XRN2-binding domain (XTBD) › XRN2-binding domain (XTBD) › XTBD 0.63 50.0 4.84e-01 100.0% 80.0%