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OM634661.1__UNY39879.1__KLEB273_gp063__00063

Bact-Vir

OM634661.1__UNY39879.1__KLEB273_gp063__00063

Identity

Accession:
OM634661 ↗
Kingdom:
phage

Quality

85.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-124
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13539.12 best Peptidase_M15_4 51.1 2.30e-13 56.7% 95.6%
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vo9A01 3.30.1380.10 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › 0.88 83.0 7.99e-01 100.0% 97.7%
4mphA00 3.30.1380.10 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › 0.79 73.0 6.28e-01 99.2% 71.8%
5hnmC00 3.30.1380.10 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › 0.77 69.0 5.95e-01 95.8% 75.3%
4muqA02 3.30.1380.10 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › 0.76 70.0 6.54e-01 99.2% 91.1%
1r44A00 3.30.1380.10 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › 0.75 70.0 5.79e-01 100.0% 86.6%
2xliA01 3.30.70.2540 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › CRISPR-associated endoribonuclease Cas6/Csy4 0.62 40.0 3.64e-01 87.5% 48.7%
4eo3A02 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.61 51.0 4.46e-01 90.8% 69.4%
2iskA01 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.60 50.0 4.32e-01 90.8% 78.8%
2hc5A01 3.30.160.170 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like 0.60 33.0 3.58e-01 75.8% 63.3%
6fyqA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.60 40.0 3.55e-01 90.8% 46.6%
4xomB00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.60 49.0 4.19e-01 90.8% 75.6%
3m05B01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 39.0 4.39e-01 84.2% 87.0%
4fgoA00 3.10.620.30 Alpha Beta › Roll › C8orf32 fold › 0.59 36.0 3.17e-01 100.0% 40.9%
1rq8A00 3.30.110.60 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › YhbY-like 0.57 30.0 3.26e-01 100.0% 58.3%
2r6aC01 1.10.860.10 Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A 0.56 31.0 3.42e-01 97.5% 65.6%
6fgjA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.56 48.0 4.47e-01 92.5% 76.7%
2mx8A01 1.10.274.70 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain 0.53 44.0 4.50e-01 87.5% 98.2%
4k2mA02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 35.0 3.47e-01 76.7% 61.8%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
None 0.88 83.0 7.64e-01 100.0% 87.8%
2448156 307.1.1.6 a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Peptidase_M15_4 0.87 83.0 7.55e-01 100.0% 85.4%
1297179 307.1.1.3 a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › VanY 0.80 74.0 6.01e-01 99.2% 64.8%
4861717 307.1.1.11 a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › PF31190 0.79 72.0 7.10e-01 100.0% 92.0%
4010530 307.1.1.2 a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Peptidase_M15 0.79 74.0 6.46e-01 99.2% 90.6%
3589629 307.1.1.3 a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › VanY 0.79 71.0 5.92e-01 96.7% 73.4%
1103093 307.1.1.3 a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › VanY 0.78 72.0 6.20e-01 99.2% 70.7%
3961855 307.1.1.2 a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Peptidase_M15 0.76 71.0 5.91e-01 100.0% 84.0%
5590 307.1.1.2 a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Peptidase_M15 0.75 70.0 5.79e-01 100.0% 86.6%
3978719 307.1.1.2 a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Peptidase_M15 0.73 68.0 5.66e-01 100.0% 84.0%
3282282 307.1.1.3 a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › VanY 0.73 65.0 6.38e-01 97.5% 88.5%
1497958 307.1.1.11 a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › PF31190 0.69 64.0 6.09e-01 100.0% 97.8%
3285027 307.1.1.5 a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Peptidase_M15_3 0.67 58.0 5.16e-01 99.2% 65.9%
3942276 307.1.1.8 a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Peptidase_M15_2 0.65 60.0 5.63e-01 100.0% 94.5%
2576225 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.61 46.0 3.97e-01 92.5% 50.0%
4962881 304.103.1.1 a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Nitroreductase 0.60 50.0 4.19e-01 90.8% 70.4%
4927353 304.103.1.1 a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Nitroreductase 0.60 50.0 4.08e-01 90.8% 66.5%
4388749 316.1.1.48 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MdcG 0.58 45.0 4.53e-01 94.2% 81.7%
4936751 873.1.1.0 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.56 38.0 3.47e-01 89.2% 51.2%
4232417 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.56 41.0 2.92e-01 76.7% 26.0%
4997832 873.1.1.0 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.55 39.0 2.95e-01 90.0% 29.8%
4999609 873.1.1.0 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.55 39.0 2.92e-01 90.0% 29.8%
4988401 873.1.1.1 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R 0.54 40.0 3.82e-01 90.0% 64.6%
3930245 101.1.2.407 alpha arrays › HTH › HTH › winged helix domain › WHD_ORC2 0.53 37.0 3.85e-01 89.2% 78.2%
3589006 316.1.1.13 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RelA_SpoT 0.53 43.0 3.78e-01 92.5% 57.4%
5065679 873.1.1.1 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R 0.51 39.0 3.45e-01 92.5% 53.0%
4444760 304.111.1.1 a+b two layers › Alpha-beta plaits › PurM C-terminal domain-like › PurM C-terminal domain-like › AIRS_C 0.51 45.0 3.88e-01 96.7% 74.7%
3246909 101.1.2.73 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82 0.51 38.0 4.09e-01 95.0% 95.0%
2439920 213.1.1.25 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 0.50 39.0 3.29e-01 83.3% 86.4%
D2 high residues 182-246
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01471.24 best PG_binding_1 68.1 8.40e-19 93.8% 94.7%
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4c2dA02 1.10.101.10 Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD 0.95 82.0 7.38e-01 100.0% 69.4%
3bkhA01 1.10.101.10 Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD 0.92 79.0 7.09e-01 100.0% 68.6%
4g54A02 1.10.101.10 Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD 0.92 79.0 7.62e-01 100.0% 81.9%
4bolA02 1.10.101.10 Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD 0.88 75.0 6.92e-01 100.0% 73.8%
1lbuA01 1.10.101.10 Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD 0.88 77.0 7.01e-01 100.0% 72.6%
1eakA01 1.10.101.10 Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD 0.80 65.0 6.59e-01 100.0% 90.5%
7aj9A01 1.10.101.10 Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD 0.78 68.0 6.74e-01 100.0% 92.5%
1ck7A01 3.40.390.10 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) 0.72 64.0 4.31e-01 98.5% 61.3%
3ceqA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 38.0 2.64e-01 73.8% 39.6%
1nxuA01 1.10.1530.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.54 46.0 4.38e-01 98.5% 98.7%
3umbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.51 38.0 3.63e-01 81.5% 94.9%
2kmfA01 1.20.58.810 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Photosystem II Pbs27 0.50 35.0 3.09e-01 72.3% 79.4%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4473649 144.1.1.1 alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 1.00 96.0 8.50e-01 98.5% 75.3%
3291401 144.1.1.1 alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.97 84.0 7.52e-01 100.0% 69.4%
1165079 144.1.1.1 alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.96 83.0 7.11e-01 100.0% 61.5%
3959835 144.1.1.0 alpha arrays › PGBD-like › PGBD-like › PGBD-like 0.96 79.0 7.68e-01 95.4% 80.0%
4032027 144.1.1.1 alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.94 81.0 7.24e-01 100.0% 69.4%
4173379 144.1.1.1 alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.94 83.0 7.67e-01 100.0% 76.2%
5019285 144.1.1.1 alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.93 83.0 7.12e-01 100.0% 64.2%
4312892 144.1.1.1 alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.92 78.0 8.15e-01 100.0% 96.7%
4117418 144.1.1.1 alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.92 78.0 8.13e-01 98.5% 96.7%
1498420 144.1.1.1 alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.92 78.0 7.31e-01 100.0% 76.3%
224034 144.1.1.1 alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.92 79.0 7.26e-01 100.0% 72.8%
4380775 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.92 77.0 5.27e-01 100.0% 29.0%
4010440 144.1.1.1 alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.91 78.0 7.43e-01 100.0% 78.7%
2859574 144.1.1.0 alpha arrays › PGBD-like › PGBD-like › PGBD-like 0.91 77.0 7.44e-01 100.0% 81.7%
1877329 144.1.1.1 alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.89 73.0 6.92e-01 96.9% 75.0%
3631772 144.1.1.0 alpha arrays › PGBD-like › PGBD-like › PGBD-like 0.89 76.0 5.32e-01 100.0% 32.8%
3263339 144.1.1.1 alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.89 78.0 7.43e-01 100.0% 81.3%
3356981 144.1.1.1 alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.89 79.0 7.32e-01 100.0% 77.5%
3275963 144.1.1.1 alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.88 79.0 6.96e-01 100.0% 68.9%
3395 144.1.1.1 alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.88 77.0 7.04e-01 100.0% 73.5%
3274761 144.1.1.1 alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.87 82.0 5.85e-01 100.0% 42.4%
4055540 144.1.1.1 alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.86 73.0 7.14e-01 100.0% 85.5%
3955223 144.1.1.1 alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.86 81.0 7.44e-01 100.0% 86.3%
3957237 144.1.1.0 alpha arrays › PGBD-like › PGBD-like › PGBD-like 0.85 79.0 7.45e-01 98.5% 90.7%
3299326 144.1.1.1 alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.84 76.0 7.62e-01 100.0% 96.9%
3319740 144.1.1.1 alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.83 75.0 6.76e-01 100.0% 74.1%
3772398 144.1.1.1 alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.82 73.0 6.77e-01 100.0% 77.5%
3299934 144.1.1.1 alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.81 73.0 6.16e-01 100.0% 61.0%
3933825 144.1.1.1 alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.80 73.0 6.94e-01 98.5% 89.3%
3060287 144.1.1.0 alpha arrays › PGBD-like › PGBD-like › PGBD-like 0.80 67.0 6.41e-01 100.0% 78.7%
3221065 144.1.1.1 alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.80 72.0 6.87e-01 98.5% 92.0%
3539881 144.1.1.1 alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.80 71.0 6.79e-01 100.0% 84.0%
3994858 144.1.1.1 alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.79 70.0 6.50e-01 100.0% 77.5%
2819638 144.1.1.1 alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.78 68.0 5.55e-01 100.0% 53.4%
3930763 144.1.1.1 alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.77 71.0 6.74e-01 100.0% 86.7%
3247155 144.1.1.1 alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.76 63.0 6.39e-01 100.0% 90.8%
3893524 144.1.1.1 alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.76 70.0 6.83e-01 98.5% 91.4%
3764906 144.1.1.1 alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.75 66.0 6.18e-01 100.0% 78.8%
3621525 144.1.1.1 alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.74 68.0 6.45e-01 98.5% 97.3%
3772718 144.1.1.1 alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.73 67.0 6.08e-01 100.0% 76.5%
2756454 235.1.1.13 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glyco_hydro_108,PG_binding_3 0.63 53.0 3.89e-01 100.0% 35.1%
3938667 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.54 39.0 3.56e-01 78.5% 63.3%
3646861 206.1.1.74 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr 0.50 39.0 2.72e-01 84.6% 32.2%
4498171 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.50 38.0 3.62e-01 83.1% 69.3%