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OM638088.1__UYL22516.1__CUB19_gp7__00007

Bact-Vir

OM638088.1__UYL22516.1__CUB19_gp7__00007

Identity

Accession:
OM638088 ↗
Kingdom:
phage

Quality

73.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Stenotrophomonas_phage_CUB19

TaxID: 2976424

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-51
PDB
Domain cluster: rep: OR521058.1__WNO25835.1__SEA_ALTADENA_13__00013__D4-50
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1m1sA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.74 55.0 4.26e-01 80.0% 74.3%
2hjqA01 3.40.5.20 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › YqbF domain 0.74 56.0 5.78e-01 100.0% 91.3%
1wicA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.72 53.0 4.00e-01 80.0% 73.0%
4v19I01 3.40.5.10 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › Ribosomal protein L9, N-terminal domain 0.71 50.0 4.85e-01 100.0% 66.7%
1z9lA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.71 53.0 3.92e-01 80.0% 70.4%
2ftrA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 55.0 4.48e-01 100.0% 88.3%
1y7xA01 2.30.30.550 Mainly Beta › Roll › SH3 type barrels. › Major Vault Protein repeat 0.63 46.0 4.79e-01 100.0% 83.0%
3r8yA01 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.62 50.0 4.69e-01 100.0% 74.2%
1w1oA03 3.40.462.10 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidases, C-terminal domain 0.61 52.0 3.42e-01 100.0% 39.5%
1y7xA02 2.30.30.550 Mainly Beta › Roll › SH3 type barrels. › Major Vault Protein repeat 0.58 41.0 4.04e-01 100.0% 69.6%
2f2hA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.58 41.0 4.21e-01 94.0% 81.2%
5f7cA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 40.0 4.05e-01 94.0% 81.6%
2ekhA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 44.0 3.94e-01 100.0% 67.5%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.54 45.0 3.59e-01 96.0% 100.0%
1ov3A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 44.0 4.33e-01 100.0% 98.2%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 43.0 4.11e-01 100.0% 92.2%
6uf3A00 3.40.630.190 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein 0.52 41.0 2.76e-01 100.0% 22.8%
1nvmB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.52 37.0 2.83e-01 84.0% 73.4%
3hdeC00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.51 39.0 2.81e-01 94.0% 26.8%
3pbkA02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.51 37.0 3.16e-01 90.0% 60.2%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4952672 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.78 64.0 6.29e-01 100.0% 83.6%
4988095 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.75 62.0 6.24e-01 100.0% 94.0%
5009 4076.3.1.2 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › YqbF 0.74 56.0 5.68e-01 100.0% 85.7%
5023430 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.74 62.0 5.93e-01 100.0% 80.0%
3613777 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.71 52.0 3.90e-01 80.0% 70.4%
3606398 3529.1.1.1 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.69 49.0 4.83e-01 100.0% 70.9%
3600188 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.68 49.0 4.76e-01 100.0% 70.9%
3714918 3529.1.1.1 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.67 48.0 4.70e-01 100.0% 70.9%
4048813 3529.1.1.1 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.66 48.0 4.77e-01 100.0% 74.5%
3705484 3529.1.1.1 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.66 47.0 4.61e-01 100.0% 70.9%
3593797 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.65 46.0 4.53e-01 100.0% 70.9%
5033467 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.65 51.0 5.20e-01 100.0% 93.8%
4269273 4076.4.1.1 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain › PriS_C 0.64 50.0 5.16e-01 98.0% 97.8%
4932084 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.64 50.0 5.05e-01 100.0% 92.0%
4169249 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.63 49.0 4.99e-01 100.0% 91.7%
5035097 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.63 48.0 4.93e-01 100.0% 95.6%
3270868 3529.1.1.1 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.62 45.0 4.46e-01 100.0% 74.5%
5036149 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.62 48.0 4.95e-01 100.0% 97.8%
4031645 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.61 48.0 4.89e-01 100.0% 94.0%
4934987 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.61 45.0 4.68e-01 98.0% 93.3%
4536596 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.61 47.0 4.77e-01 100.0% 91.7%
4982789 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.61 46.0 4.38e-01 100.0% 69.2%
4460255 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.61 46.0 4.61e-01 100.0% 86.0%
4280403 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.58 43.0 4.42e-01 98.0% 95.6%
292719 3529.1.1.1 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.58 41.0 4.02e-01 100.0% 68.4%
4093401 4187.2.1.1 ↗ a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 › NAGPA 0.55 33.0 2.74e-01 92.0% 32.6%