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OM638609.1__UNY41768.1__CPT_Milagro_049__00049

Bact-Vir

OM638609.1__UNY41768.1__CPT_Milagro_049__00049

Identity

Accession:
OM638609 ↗
Kingdom:
phage

Quality

87.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Peduoviridae› Kayeltresvirus› Burkholderia_phage_Milagro

TaxID: 2924901

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-143
PDB
Domain cluster: rep: LSDeep1_scaffold_42_prodigal-single.1__X__X__00481__D6-117
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09517.17 best RE_Eco29kI 127.0 9.00e-37 82.0% 64.2%
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3vpbA02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.60 34.0 4.30e-01 85.9% 100.0%
1j5yA02 3.30.1340.20 Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › 3H domain 0.57 37.0 4.01e-01 85.9% 79.4%
1mzpA01 3.30.190.20 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribosomal protein L1/L10, rRNA-binding domain 0.52 39.0 4.01e-01 78.9% 94.4%
2ypyA00 3.30.70.390 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Epstein Barr virus nuclear antigen-1, DNA-binding domain 0.52 36.0 3.60e-01 71.1% 68.7%
2yq1C00 3.30.70.390 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Epstein Barr virus nuclear antigen-1, DNA-binding domain 0.52 36.0 3.61e-01 73.4% 69.5%
1b24A01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.50 26.0 2.93e-01 71.1% 63.2%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
399673 821.1.1.2 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › RE_Eco29kI 0.91 89.0 7.19e-01 100.0% 62.0%
3365225 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.66 49.0 5.07e-01 99.2% 81.7%
D2 medium residues 144-206
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09517.17 best RE_Eco29kI 88.6 5.80e-25 93.7% 34.5%
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vr6A02 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.53 46.0 3.07e-01 100.0% 89.9%
2wqpA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 41.0 2.84e-01 98.4% 83.8%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
399673 821.1.1.2 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › RE_Eco29kI 0.90 84.0 5.62e-01 100.0% 30.0%
5042863 2007.3.1.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains 0.52 35.0 2.78e-01 74.6% 41.2%