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OM638611.1__UNY41852.1__CPT_Momento_022__00022

Bact-Vir

OM638611.1__UNY41852.1__CPT_Momento_022__00022

Identity

Accession:
OM638611 ↗
Kingdom:
phage

Quality

80.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-130
PDB
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4g56A03 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.68 52.0 4.70e-01 80.6% 100.0%
1qypA00 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.60 23.0 3.19e-01 75.0% 70.2%
4gioA00 2.60.40.3230 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 41.0 4.52e-01 82.3% 92.7%
4hzoA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 40.0 3.03e-01 76.6% 86.7%
2rdeA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.54 42.0 4.43e-01 83.1% 92.8%
3h6eB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 29.0 3.21e-01 85.5% 66.7%
4nzfD02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 35.0 3.95e-01 78.2% 94.4%
2bn4B03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 38.0 3.49e-01 77.4% 63.9%
1u04A04 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.50 30.0 2.53e-01 85.5% 32.6%
2hgaA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.50 29.0 3.40e-01 100.0% 82.4%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4928608 3899.1.1.0 beta complex topology › Baseplate structural protein gp8 › Baseplate structural protein gp8 › Baseplate structural protein gp8 0.80 71.0 6.51e-01 94.4% 73.6%
4932865 3899.1.1.0 beta complex topology › Baseplate structural protein gp8 › Baseplate structural protein gp8 › Baseplate structural protein gp8 0.79 71.0 6.79e-01 95.2% 88.6%
3972974 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 39.0 4.73e-01 83.9% 95.0%
3299304 3698.1.1.2 beta sandwiches › Arginine methyltransferase oligomerization subdomain › Arginine methyltransferase oligomerization subdomain › Arginine methyltransferase oligomerization subdomain › PRMT_C 0.63 51.0 4.52e-01 87.9% 89.7%
4945284 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 40.0 4.28e-01 80.6% 75.2%
4009835 11.1.1.93 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1425 0.57 40.0 4.43e-01 81.5% 93.7%
4385045 11.1.1.987 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF30412 0.56 41.0 4.33e-01 76.6% 99.1%
5035961 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 40.0 4.06e-01 76.6% 94.4%
3597758 222.1.1.0 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.55 39.0 2.93e-01 74.2% 86.9%
3518442 10.10.1.1 beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › PLAT 0.54 41.0 4.07e-01 79.8% 96.2%
3936378 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 38.0 4.10e-01 84.7% 92.0%
4629131 9.29.1.1 beta barrels › Lipocalins/Streptavidin › VirK › VirK › VirK 0.53 35.0 3.57e-01 91.9% 68.3%
3926701 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.50 23.0 2.88e-01 99.2% 72.1%
D2 high residues 214-296
PDB
D3 medium residues 320-387
PDB
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1clwA00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.73 67.0 3.89e-01 100.0% 17.7%
3fgbA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.70 46.0 2.93e-01 77.9% 13.2%
1hc7A01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.68 49.0 3.21e-01 75.0% 27.1%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.67 55.0 4.42e-01 92.6% 54.7%
4r8oA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.66 54.0 4.86e-01 92.6% 77.6%
4r03A00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.64 53.0 4.57e-01 92.6% 71.6%
3qv0A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.64 53.0 3.90e-01 91.2% 41.9%
2iayA00 3.30.1820.10 Alpha Beta › 2-Layer Sandwich › Lp2179-like fold › Lp2179-like 0.64 43.0 3.61e-01 95.6% 41.2%
2ciuA00 3.10.450.320 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mitochondrial import inner membrane translocase subunit Tim21 0.63 53.0 4.44e-01 95.6% 55.3%
2wbnA00 3.30.420.280 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.62 43.0 3.18e-01 72.1% 62.9%
1atiB01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.62 48.0 3.14e-01 85.3% 31.8%
1sesA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.61 53.0 3.46e-01 100.0% 92.8%
2nvmA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.61 45.0 3.96e-01 83.8% 52.9%
4jxkA01 3.90.180.10 Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain 0.60 43.0 3.26e-01 75.0% 50.0%
6h9xA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.60 52.0 3.40e-01 100.0% 92.9%
1d5rA02 2.60.40.1110 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 44.0 3.60e-01 79.4% 73.7%
1wleA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.60 52.0 3.42e-01 100.0% 93.7%
3q9oA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 45.0 3.20e-01 82.4% 70.8%
2dbuB00 3.60.20.40 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Gamma-glutamyltranspeptidase, small (S) subunit 0.59 48.0 3.59e-01 92.6% 90.0%
2nlvA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.59 45.0 3.89e-01 88.2% 50.9%
6jhpA01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.59 46.0 3.11e-01 89.7% 63.6%
2b5lB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 50.0 3.17e-01 98.5% 45.5%
5gv0A00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.58 47.0 3.60e-01 89.7% 37.7%
6bm0A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 49.0 3.03e-01 92.6% 24.1%
7o85C01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 37.0 3.63e-01 92.6% 58.4%
2z04B03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.57 47.0 3.46e-01 91.2% 85.5%
3ia8A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 47.0 3.74e-01 100.0% 82.1%
4h5iB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 48.0 3.07e-01 94.1% 29.0%
1jdpA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 44.0 3.29e-01 86.8% 54.7%
4a8jB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 39.0 2.76e-01 73.5% 29.1%
4kt3B00 3.10.450.170 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › type vi secretion system effector-immunity co pseudomonas protegens 0.56 42.0 3.48e-01 80.9% 45.3%
2w5nA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.56 49.0 3.11e-01 100.0% 43.3%
2yh9B00 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.56 38.0 3.86e-01 82.4% 69.1%
2jkbA02 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.56 46.0 2.92e-01 92.6% 34.8%
4c92G00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 40.0 3.96e-01 83.8% 70.7%
3c5mA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 48.0 3.03e-01 98.5% 39.4%
2qz5A00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.55 46.0 3.66e-01 97.1% 92.1%
2lexA00 2.20.25.80 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain 0.55 37.0 3.86e-01 79.4% 77.8%
7mhuA01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.55 46.0 2.90e-01 94.1% 33.3%
1p5tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 44.0 3.78e-01 86.8% 70.8%
1dp4C02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 44.0 3.20e-01 91.2% 50.0%
3rcyB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 41.0 3.35e-01 83.8% 75.2%
4ms4A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.54 43.0 3.21e-01 91.2% 90.6%
2nwvA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.54 45.0 3.79e-01 91.2% 57.1%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.54 46.0 3.52e-01 98.5% 46.4%
4zovB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 46.0 2.84e-01 92.6% 22.3%
2du7B03 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.53 40.0 2.73e-01 86.8% 47.2%
5a2fA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 46.0 3.94e-01 94.1% 70.8%
2hivA03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 41.0 3.31e-01 89.7% 72.5%
4jb9H01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 42.0 3.54e-01 95.6% 49.6%
2hesX00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 44.0 2.91e-01 98.5% 50.6%
3omzA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 37.0 3.25e-01 88.2% 50.5%
3rd4B00 2.40.50.660 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 36.0 3.41e-01 75.0% 80.5%
6b9tF01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 37.0 3.12e-01 79.4% 97.6%
3iwgA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 42.0 3.43e-01 95.6% 60.1%
8eg0B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 44.0 2.81e-01 100.0% 35.1%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4028363 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.71 54.0 4.93e-01 88.2% 62.2%
5082652 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.70 49.0 3.96e-01 76.5% 39.2%
4584755 5.1.4.36 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.66 52.0 3.12e-01 83.8% 21.4%
4634997 5.1.4.17 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A,MMS1_N 0.65 51.0 2.83e-01 83.8% 10.5%
4011804 5.1.4.36 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.65 51.0 3.08e-01 83.8% 21.2%
1145867 158.1.1.1 alpha bundles › Lipoxygenase › Lipoxygenase › Lipoxygenase › Lipoxygenase 0.64 52.0 3.01e-01 91.2% 15.4%
4013267 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.64 49.0 3.21e-01 83.8% 43.6%
3328359 844.1.1.2 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.62 54.0 3.97e-01 100.0% 65.1%
3704463 314.1.1.2 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.62 48.0 3.33e-01 82.4% 47.7%
5033616 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.62 51.0 3.47e-01 92.6% 98.1%
3621281 314.1.1.2 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.62 55.0 3.52e-01 100.0% 89.3%
3390996 2007.1.2.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.62 51.0 3.77e-01 95.6% 47.5%
4330393 243.3.1.23 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3027 0.61 41.0 3.83e-01 76.5% 54.5%
3872685 2007.1.2.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.61 49.0 3.54e-01 92.6% 37.2%
3191149 5.1.7.2 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › Sortilin-Vps10 0.61 53.0 3.17e-01 100.0% 27.1%
3990705 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.60 48.0 3.60e-01 88.2% 36.7%
3684135 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.60 47.0 2.99e-01 83.8% 90.3%
3290396 5.1.2.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_32N 0.60 43.0 2.85e-01 76.5% 18.3%
4427499 314.1.1.2 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.60 52.0 3.40e-01 100.0% 94.3%
3934930 2007.1.2.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.60 48.0 3.52e-01 91.2% 94.0%
3436009 5.1.4.101 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF1618 0.59 49.0 3.36e-01 92.6% 45.5%
3740896 5.1.4.16 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.59 51.0 3.33e-01 97.1% 49.5%
3061339 2007.1.2.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.59 49.0 3.11e-01 97.1% 36.9%
4203120 5.1.4.36 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.59 52.0 3.14e-01 97.1% 34.6%
4348598 3894.1.1.6 beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › Glyco_trans_A_1 0.58 47.0 3.85e-01 92.6% 50.4%
3849532 2007.1.2.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.57 47.0 3.35e-01 91.2% 43.8%
3926253 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 47.0 2.98e-01 92.6% 23.6%
4947372 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 45.0 3.92e-01 89.7% 55.5%
4947039 314.1.1.3 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d 0.56 39.0 2.55e-01 73.5% 18.5%
3649104 844.1.1.5 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › DUF3527 0.56 47.0 3.30e-01 98.5% 86.8%
3583836 5.1.3.135 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Kelch_KLHDC2_KLHL20_DRC7, Beta-prop_ATRN-LZTR1 0.56 47.0 3.01e-01 94.1% 35.9%
3505097 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.56 42.0 3.98e-01 86.8% 67.1%
3610277 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.55 46.0 2.95e-01 100.0% 92.8%
3516546 2007.1.2.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.55 44.0 3.28e-01 91.2% 94.7%
3403871 2007.1.2.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.55 46.0 3.40e-01 98.5% 42.4%
3856372 2007.1.2.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.54 47.0 3.44e-01 98.5% 97.9%
3716988 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.54 46.0 2.96e-01 95.6% 25.2%
2702891 2003.1.5.28 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › mRNA_G-N7_MeTrfase 0.54 38.0 2.64e-01 89.7% 19.8%
3998279 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.54 42.0 3.68e-01 88.2% 57.3%
3806012 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.54 44.0 2.94e-01 98.5% 51.4%
3917376 4.1.1.239 beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.53 39.0 3.88e-01 77.9% 75.7%
None 0.53 38.0 2.40e-01 82.4% 31.4%
4178004 274.1.1.1 a+b two layers › Pili subunits › Pili subunits › Pili subunits › Pilin 0.53 44.0 3.70e-01 95.6% 68.3%
3899247 2007.1.2.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.53 45.0 3.34e-01 98.5% 39.5%
3207950 314.1.1.3 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d 0.52 38.0 2.43e-01 80.9% 23.7%
4461872 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 35.0 3.19e-01 70.6% 53.7%
3524397 2007.1.2.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.51 44.0 3.17e-01 98.5% 39.5%
6673 274.1.1.1 a+b two layers › Pili subunits › Pili subunits › Pili subunits › Pilin 0.51 42.0 3.60e-01 100.0% 55.6%
4937678 314.1.1.3 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d 0.51 40.0 2.71e-01 97.1% 48.9%
3907624 60.1.1.14 beta barrels › SPOC domain-like › SPOC domain-related › SPOC domain › PF29334 0.51 42.0 3.26e-01 97.1% 64.2%
None 0.51 37.0 2.27e-01 80.9% 19.0%
4149684 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.50 38.0 2.63e-01 83.8% 30.0%
D4 medium residues 418-473
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF21446.4 best Gp34_trimer 33.6 6.80e-08 75.0% 34.8%
D5 medium residues 571-623
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ffeX00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.69 49.0 3.49e-01 73.6% 28.7%
2o5nA02 3.30.500.30 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.67 59.0 4.17e-01 98.1% 70.1%
4asmB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.65 57.0 3.46e-01 100.0% 35.0%
7zqiA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.65 57.0 3.94e-01 100.0% 73.6%
4iusA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.64 46.0 2.93e-01 77.4% 29.2%
6aiiA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.64 55.0 3.41e-01 100.0% 42.4%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.62 45.0 4.47e-01 77.4% 94.6%
3dbxA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.62 55.0 3.76e-01 100.0% 71.7%
2vy0B00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 49.0 3.12e-01 90.6% 43.7%
3l9rA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.61 53.0 3.71e-01 100.0% 73.1%
8dc1A01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.60 47.0 3.05e-01 100.0% 18.2%
3r90A00 3.10.400.20 Alpha Beta › Roll › Sulfate adenylyltransferase › 0.60 53.0 3.62e-01 98.1% 40.5%
3noyB02 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.60 46.0 3.84e-01 84.9% 65.3%
1o4yA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 48.0 3.03e-01 88.7% 42.6%
1q7hA01 3.10.450.120 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 0.59 50.0 4.72e-01 94.3% 93.8%
2p3nA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.59 52.0 3.88e-01 100.0% 59.3%
3ilfA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 46.0 2.94e-01 86.8% 43.2%
2pr1A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.58 42.0 3.04e-01 77.4% 58.6%
4awdB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 44.0 2.79e-01 84.9% 45.5%
5dzeA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 46.0 3.18e-01 90.6% 43.2%
2wm1A00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.58 45.0 2.78e-01 83.0% 53.0%
4a2lF02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 46.0 2.87e-01 88.7% 26.3%
3tg9A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.57 51.0 3.11e-01 100.0% 49.1%
2qzbA00 2.60.460.10 Mainly Beta › Sandwich › protein yfey like fold › protein yfey like domain 0.57 43.0 3.34e-01 90.6% 89.7%
5ocqA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 43.0 2.78e-01 86.8% 45.8%
3vfiA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 43.0 3.50e-01 84.9% 85.6%
2xzmR01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 45.0 2.79e-01 88.7% 37.6%
3iv4A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 45.0 3.56e-01 90.6% 84.8%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.55 38.0 3.90e-01 86.8% 76.0%
2lpuA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.55 45.0 3.41e-01 98.1% 54.7%
3d79A01 3.10.450.120 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 0.54 45.0 4.11e-01 94.3% 94.6%
1zldA00 2.60.40.1920 Mainly Beta › Sandwich › Immunoglobulin-like › Proteinaceous host-selective toxin ToxA 0.54 44.0 3.67e-01 96.2% 79.4%
3gjyA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 46.0 2.96e-01 100.0% 63.4%
3e1sA04 2.30.30.940 Mainly Beta › Roll › SH3 type barrels. › 0.54 38.0 3.60e-01 79.2% 85.5%
1thxA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 40.0 3.27e-01 86.8% 83.3%
3lnpA01 2.30.40.10 Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 0.52 44.0 3.37e-01 100.0% 79.7%
5tgfD00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 38.0 2.42e-01 86.8% 17.5%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.50 35.0 3.62e-01 98.1% 83.3%
3wmvB00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.50 34.0 2.62e-01 73.6% 68.5%
1jlxA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.50 37.0 2.96e-01 90.6% 60.7%
3vsfA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.50 37.0 2.82e-01 81.1% 87.9%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4928895 79.1.1.0 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.88 72.0 4.47e-01 100.0% 17.5%
4934918 331.2.1.0 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.73 47.0 4.31e-01 77.4% 50.0%
4484870 298.3.1.0 a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like 0.72 60.0 4.40e-01 94.3% 86.2%
5075886 243.6.1.1 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.70 54.0 4.89e-01 83.0% 98.6%
3980770 79.1.1.0 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.70 61.0 4.22e-01 96.2% 32.7%
150881 233.1.1.0 a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain 0.69 49.0 3.49e-01 73.6% 28.7%
4179984 865.1.1.2 beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain › TilS_C 0.68 52.0 4.01e-01 83.0% 88.7%
327605 233.1.1.8 a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › M157_N_1 0.67 59.0 4.06e-01 98.1% 62.9%
5049994 243.6.1.4 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA 0.65 49.0 4.39e-01 83.0% 98.7%
4978884 243.6.1.0 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.64 49.0 4.38e-01 83.0% 100.0%
2533894 10.1.1.74 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › PF30275 0.64 55.0 3.41e-01 100.0% 42.4%
5068490 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.63 45.0 3.10e-01 77.4% 34.6%
4548121 243.6.1.9 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 0.63 40.0 3.75e-01 79.2% 50.0%
3402686 5.1.4.19 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Coatomer_WDAD 0.62 48.0 2.98e-01 83.0% 19.7%
3268583 243.6.1.4 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA 0.62 55.0 4.71e-01 98.1% 88.2%
3273079 9.4.1.0 beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.62 52.0 4.38e-01 92.5% 98.9%
4636520 10.1.1.74 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › PF30275 0.62 50.0 3.16e-01 90.6% 47.1%
3783291 5.1.4.19 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Coatomer_WDAD 0.62 47.0 2.94e-01 83.0% 19.7%
4026913 243.6.1.4 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA 0.61 53.0 4.58e-01 98.1% 88.2%
4946183 243.6.1.12 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › PUA 0.61 47.0 4.18e-01 83.0% 90.7%
3229685 5.1.4.19 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Coatomer_WDAD 0.61 47.0 2.96e-01 84.9% 20.7%
4165617 865.1.1.0 beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain 0.61 55.0 4.12e-01 100.0% 82.4%
4971539 243.6.1.1 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.61 46.0 4.15e-01 83.0% 97.3%
5045984 243.6.1.1 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.61 53.0 4.53e-01 98.1% 81.2%
5071103 5.1.4.43 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP_3 0.60 47.0 2.83e-01 84.9% 24.8%
3709875 10.1.1.56 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › TS_C 0.60 46.0 3.42e-01 84.9% 33.8%
4665982 296.1.1.0 a+b three layers › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 0.60 46.0 3.77e-01 84.9% 62.0%
5067171 243.6.1.1 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.60 44.0 4.16e-01 81.1% 92.3%
4985280 243.6.1.1 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.60 46.0 4.11e-01 83.0% 89.3%
4431016 865.1.1.0 beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain 0.60 53.0 4.06e-01 100.0% 84.2%
5021241 243.6.1.0 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.59 45.0 4.16e-01 83.0% 92.9%
5003057 243.6.1.0 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.59 47.0 4.26e-01 84.9% 94.3%
4077601 296.1.1.3 a+b three layers › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › PF26540 0.59 46.0 3.71e-01 84.9% 59.6%
3262209 243.6.1.4 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA 0.58 51.0 4.28e-01 98.1% 85.6%
3701280 5.1.4.313 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_BBS7 0.58 46.0 2.83e-01 84.9% 24.8%
4988550 243.6.1.4 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA 0.58 44.0 3.93e-01 83.0% 89.3%
4616685 296.1.1.3 a+b three layers › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › PF26540 0.58 43.0 3.36e-01 83.0% 51.7%
3784260 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 45.0 2.73e-01 88.7% 33.5%
3521785 5.1.4.303 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS2_N, BBS2_Mid 0.57 48.0 2.96e-01 94.3% 80.0%
5047980 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.56 48.0 3.04e-01 100.0% 78.9%
5046652 3784.1.1.0 a+b two layers › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related 0.56 47.0 3.29e-01 96.2% 80.0%
3929337 5.1.4.303 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS2_N, BBS2_Mid 0.56 47.0 2.99e-01 94.3% 74.8%
3487549 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.55 47.0 2.60e-01 98.1% 19.4%
4931992 243.6.1.1 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.55 47.0 4.23e-01 98.1% 90.7%
3466830 5.1.4.257 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP, FG-GAP_3 0.55 45.0 2.67e-01 92.5% 26.7%
3993185 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 45.0 2.80e-01 92.5% 33.4%
3659277 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 48.0 2.94e-01 98.1% 33.9%
1164615 243.6.1.1 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.54 45.0 4.03e-01 94.3% 89.7%
1110926 5.1.3.3 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Neur 0.54 46.0 2.82e-01 98.1% 36.2%
1701074 5.1.4.254 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_NOL10_N 0.53 44.0 2.72e-01 100.0% 38.3%
3464260 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.52 43.0 2.59e-01 92.5% 18.0%
5048065 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.52 43.0 3.56e-01 94.3% 53.0%
3813814 5.1.4.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.52 45.0 2.74e-01 100.0% 72.2%
3964807 9.7.1.2 beta barrels › Lipocalins/Streptavidin › Metalloprotease inhibitor › Metalloprotease inhibitor › PF28291 0.51 45.0 3.72e-01 100.0% 63.2%
3542828 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.50 41.0 2.54e-01 100.0% 38.2%
D6 medium residues 651-729
PDB