←Back to structures
OM650248.1__UNI73396.1__ER16_Large7__00007
Bact-VirOM650248.1__UNI73396.1__ER16_Large7__00007
Identity
- Accession:
- OM650248 ↗
- Kingdom:
- phage
Quality
67.8
mean pLDDT
Taxonomy
Orthornavirae›
Duplornaviricota›
Vidaverviricetes›
Mindivirales›
Cystoviridae›
Pseudomonas_phage_ER16
TaxID: 2917704
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-73
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8gccA03 | 1.10.268.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 | 0.76 | 53.0 | 4.66e-01 | 72.6% | 77.9% |
| 4gc0A01 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.53 | 45.0 | 3.22e-01 | 100.0% | 82.7% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4541653 | 4970.1.1.0 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I | 0.66 | 49.0 | 4.41e-01 | 76.7% | 58.9% |
| 4259013 | 3563.1.1.1 ↗ | alpha bundles › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › TatC | 0.62 | 43.0 | 3.06e-01 | 72.6% | 78.2% |
| 3696568 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.60 | 53.0 | 3.97e-01 | 100.0% | 83.2% |
| 3710895 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.60 | 55.0 | 4.64e-01 | 100.0% | 62.6% |
| 3402849 | 859.1.1.4 ↗ | a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › ATG13 | 0.60 | 44.0 | 3.22e-01 | 80.8% | 76.7% |
| 4014856 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 52.0 | 3.27e-01 | 100.0% | 73.4% |
| 3412963 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.54 | 37.0 | 2.98e-01 | 71.2% | 40.0% |
| 3684136 | 604.1.1.154 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF27021 | 0.54 | 46.0 | 3.92e-01 | 90.4% | 99.1% |