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OM650248.1UNI73397.1ER16_Large8__00008

Bact-Vir

OM650248.1__UNI73397.1__ER16_Large8__00008

Identity

Accession:: OM650248 ↗
Kingdom:: phage

Quality

78.4 mean pLDDT

Taxonomy

Orthornavirae› Duplornaviricota› Vidaverviricetes› Mindivirales› Cystoviridae› Pseudomonas_phage_ER16

TaxID: 2917704

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 249-433

PDB

Domain cluster: representative

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4jgwA01	1.20.870.10	Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1	0.66	25.0	2.70e-01	74.1%	38.5%
2pvqA02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.61	32.0	4.13e-01	75.7%	88.7%
2uvaG01	1.20.1050.120	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.59	31.0	3.60e-01	75.7%	67.6%
1i6zA00	1.20.58.120	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain	0.59	35.0	4.10e-01	77.3%	81.5%
4k7bA00	1.20.120.1740	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Sodium ion translocating NADH-quinone reductase subunit C-like	0.58	24.0	3.02e-01	73.0%	59.5%
2bwfA00	3.10.20.90	Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1	0.56	25.0	3.70e-01	98.4%	98.7%
4oydB00	1.10.132.20	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor	0.54	32.0	3.99e-01	73.5%	93.2%
1yz5B00	1.20.190.20	Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › 14-3-3 domain	0.52	32.0	2.99e-01	81.6%	46.7%
2x1dA02	1.10.10.2120	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.51	22.0	3.28e-01	75.7%	95.9%
8ek4A01	1.20.120.20	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein	0.50	32.0	3.71e-01	73.5%	87.2%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
55139	604.3.1.1 ↗	alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG	0.63	37.0	4.47e-01	77.3%	87.7%
2725469	4984.1.1.1 ↗	alpha bundles › Duffy-binding-like domain, C-terminal subdomain › Duffy-binding-like domain, C-terminal subdomain › Duffy-binding-like domain, C-terminal subdomain › PFEMP	0.58	34.0	4.11e-01	76.8%	86.9%
3790837	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.57	31.0	3.52e-01	71.9%	68.9%
5000824	4323.1.1.0 ↗	alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C	0.55	33.0	3.71e-01	83.8%	74.5%
4678967	327.5.1.0 ↗	a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins	0.55	31.0	3.61e-01	98.4%	75.6%
4326722	621.1.1.3 ↗	alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Sey1_3HB	0.53	32.0	3.30e-01	81.1%	60.0%
5046568	604.12.1.0 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain	0.53	32.0	3.35e-01	75.7%	62.9%
4960168	3877.1.1.0 ↗	alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC	0.52	29.0	3.10e-01	71.4%	60.6%
3182704	219.1.1.0 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases	0.52	39.0	2.68e-01	76.2%	36.7%
3565301	3860.1.1.1 ↗	alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm › IQ	0.51	26.0	2.47e-01	75.7%	40.0%
3958574	3291.1.1.0 ↗	alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related	0.51	30.0	3.16e-01	74.1%	63.6%
4022048	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.50	34.0	3.56e-01	75.1%	72.0%

D2 medium residues 23-127_227-248

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2e6xA00	3.10.20.570	Alpha Beta › Roll › Ubiquitin-like (UB roll) › Protein of unknown function DUF3248	0.51	28.0	3.74e-01	81.9%	100.0%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2045452	3738.1.1.1 ↗	a+b complex topology › Major inner capsid protein P1 › Major inner capsid protein P1 › Major inner capsid protein P1 › P1	0.77	71.0	4.32e-01	100.0%	37.6%
3487323	214.1.1.1 ↗	a+b two layers › SH2 › SH2 › SH2 › SH2	0.51	20.0	2.42e-01	75.6%	50.6%

D3 medium residues 128-226

PDB

Domain cluster: representative

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2045452	3738.1.1.1 ↗	a+b complex topology › Major inner capsid protein P1 › Major inner capsid protein P1 › Major inner capsid protein P1 › P1	0.62	57.0	3.35e-01	100.0%	50.7%