←Back to structures

OM654377.1__UNY40500.1__KLEP7_gp78__00078

Bact-Vir

OM654377.1__UNY40500.1__KLEP7_gp78__00078

Identity

Accession:
OM654377 ↗
Kingdom:
phage

Quality

86.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudaeromonas_phage_vB_PpeM__KLEP7

TaxID: 2928862

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-42
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h7lA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 60.0 4.59e-01 100.0% 52.7%
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.67 53.0 4.32e-01 100.0% 59.8%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.67 56.0 4.54e-01 100.0% 83.3%
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.66 52.0 5.07e-01 100.0% 84.0%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.65 53.0 4.65e-01 100.0% 60.6%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.62 50.0 3.46e-01 100.0% 28.1%
2ckaA01 3.40.5.120 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.62 47.0 4.54e-01 100.0% 75.5%
3holA03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.61 49.0 4.02e-01 100.0% 94.4%
1xffA00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.61 49.0 3.13e-01 100.0% 16.8%
2lvhA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.60 45.0 4.46e-01 100.0% 77.8%
8gk4C02 3.30.70.1430 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.60 45.0 3.81e-01 100.0% 98.9%
2wadA02 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.60 48.0 3.37e-01 100.0% 26.4%
2ff4A03 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.59 48.0 3.77e-01 100.0% 92.9%
3nycA02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.59 46.0 3.34e-01 100.0% 49.3%
3c0fB00 3.30.1490.340 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.59 43.0 3.56e-01 80.5% 89.4%
4dipH00 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.58 50.0 3.66e-01 100.0% 65.5%
4x9xA01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 40.0 2.78e-01 100.0% 20.8%
2cs4A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 41.0 3.41e-01 100.0% 37.9%
3lyrA00 2.60.40.3180 Mainly Beta › Sandwich › Immunoglobulin-like › Transcription factor COE1, DNA-binding domain 0.57 47.0 3.08e-01 100.0% 47.9%
3obaA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 40.0 3.38e-01 100.0% 40.4%
1wh3A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 42.0 3.78e-01 100.0% 94.4%
3gidB02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.55 40.0 3.42e-01 100.0% 43.4%
3l2pA03 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.55 43.0 3.21e-01 92.7% 96.7%
4tn3A01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.54 36.0 3.70e-01 100.0% 72.5%
4w8oB00 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.54 42.0 2.41e-01 85.4% 87.7%
3r7wC02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.54 48.0 3.50e-01 100.0% 60.7%
3bp6B01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 43.0 3.44e-01 100.0% 46.9%
5x6vF00 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.53 47.0 3.37e-01 100.0% 58.5%
4oj8B00 3.60.130.10 Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like 0.53 40.0 2.49e-01 87.8% 29.9%
3bc9A01 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 43.0 3.48e-01 100.0% 46.2%
5ejrA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 40.0 3.43e-01 100.0% 70.9%
3dadA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.52 41.0 2.54e-01 100.0% 28.7%
3vz3A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.52 43.0 2.67e-01 100.0% 60.1%
3rosA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.52 43.0 2.66e-01 100.0% 59.3%
3r7wB02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 36.0 2.90e-01 90.2% 35.6%
3n6xA03 3.30.1490.270 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.51 40.0 3.72e-01 100.0% 67.9%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5070582 815.1.1.0 ↗ a+b two layers › Chromosomal protein MC1 › Chromosomal protein MC1 › Chromosomal protein MC1 0.69 54.0 4.43e-01 100.0% 45.9%
4962153 7056.1.1.0 ↗ few secondary structure elements › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan 0.66 58.0 5.71e-01 100.0% 91.1%
3216210 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.66 55.0 5.24e-01 100.0% 90.0%
3976564 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.66 58.0 3.92e-01 100.0% 28.7%
1697854 270.2.1.0 ↗ beta barrels › FMT C-terminal domain-like › lantibiotic immunity protein SpaI › lantibiotic immunity protein SpaI 0.66 40.0 2.93e-01 100.0% 21.1%
4296472 329.1.1.1 ↗ a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › GAD 0.65 52.0 3.47e-01 90.2% 61.2%
3721040 4176.1.1.2 ↗ a/b three-layered sandwiches › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › S-Me-THD_N 0.64 50.0 3.23e-01 100.0% 17.1%
5080205 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.62 48.0 4.66e-01 100.0% 82.0%
3963089 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 48.0 3.69e-01 100.0% 54.5%
3388528 7056.1.1.0 ↗ few secondary structure elements › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan 0.60 46.0 4.69e-01 100.0% 90.0%
3701633 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.60 47.0 3.79e-01 90.2% 98.8%
3622513 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.60 48.0 4.43e-01 100.0% 85.0%
3211869 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.60 46.0 3.78e-01 100.0% 43.3%
3397821 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 43.0 2.87e-01 82.9% 52.6%
3475200 223.2.1.33 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 0.58 42.0 3.05e-01 80.5% 31.5%
3963468 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.58 41.0 3.23e-01 82.9% 90.5%
4463006 3115.2.1.0 ↗ a+b two layers › GP2-like › GP2 › GP2 0.58 46.0 4.53e-01 100.0% 88.9%
3889864 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 44.0 4.01e-01 100.0% 63.6%
4315174 11.1.1.587 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › VEGFR1-3_N_Ig-like 0.57 44.0 2.94e-01 100.0% 18.9%
4953501 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 42.0 4.26e-01 100.0% 90.0%
3475783 822.2.1.1 ↗ a+b two layers › GYF/BRK domain-like › BRK domain-like › BRK domain-like › BRK 0.56 39.0 3.99e-01 100.0% 100.0%
4993851 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 42.0 4.19e-01 100.0% 84.4%
3618720 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 45.0 3.60e-01 100.0% 87.4%
4053035 4180.1.1.1 ↗ a+b two layers › SpoVG-like › SpoVG-like › SpoVG-like › SpoVG 0.55 41.0 3.29e-01 82.9% 54.1%
4020851 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 48.0 3.31e-01 100.0% 63.1%
3263784 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 41.0 2.75e-01 82.9% 28.8%
3277720 375.1.1.185 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_8 0.54 40.0 4.08e-01 100.0% 92.5%
3575366 221.1.1.76 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.53 40.0 3.31e-01 97.6% 87.4%
3789521 2003.1.1.48 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › YjeF_N 0.53 44.0 2.75e-01 100.0% 100.0%
3935404 221.1.1.76 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.53 45.0 3.62e-01 100.0% 95.6%
3177841 221.1.1.52 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_2 0.52 45.0 3.55e-01 100.0% 45.6%
3743053 3628.1.1.1 ↗ a+b complex topology › Transcription factor tau 60 kDa subunit › Transcription factor tau 60 kDa subunit › Transcription factor tau 60 kDa subunit › zf-TFIIIC 0.52 39.0 2.62e-01 90.2% 51.3%
4979655 301.9.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › HypA Ni-binding domain › HypA Ni-binding domain › HypA 0.52 40.0 3.04e-01 100.0% 33.6%
4985088 301.9.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › HypA Ni-binding domain › HypA Ni-binding domain › HypA 0.51 41.0 3.08e-01 100.0% 90.2%
3741339 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 45.0 3.45e-01 100.0% 74.2%
3499017 822.2.1.0 ↗ a+b two layers › GYF/BRK domain-like › BRK domain-like › BRK domain-like 0.50 35.0 3.21e-01 95.1% 50.0%