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OM654404.1__UPI11684.1__X__00009

Bact-Vir

OM654404.1__UPI11684.1__X__00009

Identity

Accession:
OM654404 ↗
Kingdom:
phage

Quality

80.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autonotataviridae› Ahphunavirus› Aeromonas_phage_yong1

TaxID: 2924882

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-63
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3tdgA01 3.10.450.520 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.72 42.0 4.22e-01 73.0% 56.1%
2kvtA00 3.30.730.30 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein 0.65 54.0 5.27e-01 96.8% 83.1%
2rajA02 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.62 51.0 4.19e-01 96.8% 70.6%
5cxxB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.61 49.0 3.31e-01 93.7% 26.3%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.60 38.0 3.95e-01 100.0% 69.5%
7oufB01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.60 49.0 3.83e-01 95.2% 100.0%
4oxwA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.59 49.0 4.22e-01 96.8% 83.0%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 46.0 4.47e-01 98.4% 81.7%
3i3lA02 3.30.390.160 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.57 48.0 3.88e-01 95.2% 74.4%
6qp7A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 45.0 2.76e-01 95.2% 22.1%
1whnA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 45.0 4.03e-01 100.0% 60.4%
2ltsA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 41.0 3.78e-01 98.4% 60.5%
2wacA01 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 43.0 3.54e-01 88.9% 82.5%
2z17A00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.55 45.0 3.95e-01 92.1% 77.7%
4i1sB00 4.10.80.340 Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › 0.54 35.0 3.73e-01 81.0% 78.8%
5hc2B00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 46.0 2.94e-01 98.4% 76.6%
2i46A00 2.40.50.960 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 40.0 3.05e-01 79.4% 79.6%
6a97C01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.54 42.0 3.55e-01 96.8% 100.0%
2n3gA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 43.0 4.17e-01 98.4% 83.3%
6jptA00 3.30.230.90 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.53 39.0 3.34e-01 85.7% 50.4%
2vifA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.53 44.0 3.65e-01 100.0% 66.7%
2qzbA00 2.60.460.10 Mainly Beta › Sandwich › protein yfey like fold › protein yfey like domain 0.52 36.0 2.87e-01 100.0% 31.7%
3kf8A00 2.40.50.1040 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 43.0 3.09e-01 96.8% 73.9%
4l0mA00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.52 44.0 3.03e-01 96.8% 96.2%
2z5bB01 3.30.230.90 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.52 39.0 3.31e-01 87.3% 56.3%
6cz7A01 2.20.25.90 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains 0.51 33.0 3.32e-01 74.6% 66.1%
2epbA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 36.0 3.57e-01 77.8% 69.1%
6l4lA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.50 40.0 3.23e-01 92.1% 66.9%
5b55A01 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 44.0 3.16e-01 100.0% 61.1%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3738714 220.1.1.74 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H 0.74 54.0 4.43e-01 77.8% 45.5%
3592181 220.1.1.74 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H 0.71 52.0 4.05e-01 77.8% 37.0%
4944647 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.71 48.0 5.48e-01 98.4% 100.0%
4945290 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.65 52.0 5.36e-01 96.8% 91.7%
5046254 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 38.0 4.25e-01 74.6% 77.8%
3836411 252.1.1.1 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD 0.65 43.0 4.39e-01 100.0% 71.7%
3703176 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.65 38.0 4.33e-01 74.6% 81.8%
3257727 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.62 49.0 4.04e-01 93.7% 54.6%
1177166 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 39.0 4.40e-01 90.5% 93.2%
5071179 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 41.0 4.24e-01 71.4% 75.0%
3356481 386.1.1.117 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7028 0.59 38.0 3.52e-01 76.2% 50.6%
3426675 252.1.1.1 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD 0.58 43.0 4.44e-01 95.2% 88.1%
3592743 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.57 49.0 4.58e-01 100.0% 78.8%
5049605 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.57 43.0 4.45e-01 84.1% 98.2%
4609498 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.57 47.0 4.38e-01 98.4% 72.5%
3299580 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.55 41.0 4.12e-01 98.4% 83.1%
3663555 7512.1.1.4 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_10 0.55 44.0 2.76e-01 92.1% 18.2%
3383781 252.1.1.0 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD 0.54 37.0 4.02e-01 92.1% 92.0%
3297981 252.1.1.1 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD 0.54 37.0 3.86e-01 100.0% 81.8%
3929173 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.53 46.0 4.17e-01 98.4% 71.8%
4996610 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.53 43.0 4.00e-01 100.0% 83.3%
3462961 5.1.4.122 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF295 0.53 42.0 2.89e-01 93.7% 23.9%
3740759 4099.1.1.3 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spc24 0.52 40.0 4.14e-01 93.7% 90.0%
3924073 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 35.0 3.04e-01 93.7% 41.9%
3484139 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.52 38.0 3.07e-01 77.8% 88.8%
3973387 5.1.5.74 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DUF3686 0.52 44.0 2.89e-01 100.0% 34.2%
3652838 252.1.1.0 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD 0.51 35.0 2.83e-01 100.0% 31.9%
5047299 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 27.0 3.27e-01 74.6% 80.0%
3673032 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 35.0 3.45e-01 76.2% 64.3%
3445964 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 39.0 2.66e-01 87.3% 26.0%
3518948 214.1.1.9 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7063 0.51 39.0 3.69e-01 92.1% 96.5%
D2 medium residues 77-152
PDB
Domain cluster: representative