←Back to structures

OM681334.1__UNJ22062.1__X__00022

Bact-Vir

OM681334.1__UNJ22062.1__X__00022

Identity

Accession:
OM681334 ↗
Kingdom:
phage

Quality

84.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Microcystis_phage_vB_MweS-yong2

TaxID: 2924883

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 91-178
PDB
Domain cluster: rep: MW824397.1__QZI91684.1__PODOV088v1_p0023__00023__D41-137
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bzcA05 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 45.0 4.46e-01 80.7% 85.4%
6o38A04 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.60 44.0 4.45e-01 100.0% 77.5%
2ba0A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 46.0 4.66e-01 83.0% 96.6%
1jb3A00 2.40.50.120 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 41.0 3.64e-01 70.5% 77.2%
1ckmA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 37.0 3.87e-01 71.6% 68.7%
4g56A03 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.58 51.0 4.10e-01 96.6% 87.7%
3tdqA00 2.40.50.320 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Copper binding periplasmic protein CusF 0.58 42.0 4.23e-01 75.0% 81.4%
3zyyX03 3.10.20.880 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.58 43.0 4.32e-01 78.4% 92.0%
2rcnA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 38.0 4.34e-01 71.6% 96.7%
1bkbA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 39.0 4.45e-01 71.6% 98.5%
2k52A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 43.0 4.62e-01 80.7% 100.0%
1t9hA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 42.0 4.50e-01 78.4% 98.6%
3k0xA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 45.0 4.37e-01 100.0% 78.8%
5lm7A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 40.0 4.23e-01 77.3% 96.2%
3u50C01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 49.0 4.33e-01 100.0% 96.1%
3k0yA01 2.40.50.500 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NigD-like N-terminal OB domain 0.54 37.0 4.10e-01 70.5% 98.5%
3trzA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 38.0 3.87e-01 73.9% 95.4%
3kf8B00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 47.0 4.30e-01 100.0% 78.3%
4mlgG00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 47.0 3.24e-01 100.0% 77.5%
2id0A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 35.0 3.69e-01 70.5% 76.9%
1se8A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 37.0 3.46e-01 75.0% 90.1%
1rfmA02 3.30.1370.60 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, NADPH binding domain 0.52 41.0 3.23e-01 90.9% 72.0%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5015045 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 44.0 4.89e-01 100.0% 88.6%
4085660 2.1.1.57 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.63 43.0 4.50e-01 70.5% 92.5%
4362753 2.1.1.18 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.62 37.0 4.30e-01 70.5% 86.7%
4981578 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 51.0 4.84e-01 100.0% 75.2%
4680940 2.1.1.100 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM_2 0.62 43.0 4.58e-01 72.7% 98.7%
4053036 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.61 45.0 4.44e-01 77.3% 86.3%
4072975 2.1.1.57 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.61 42.0 4.37e-01 70.5% 92.5%
4584501 2.1.1.57 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.60 41.0 4.29e-01 70.5% 92.5%
3721143 2.1.1.226 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29086 0.59 46.0 4.22e-01 83.0% 89.6%
4002805 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 44.0 4.79e-01 79.5% 100.0%
4981503 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.59 46.0 4.55e-01 84.1% 100.0%
3694745 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.59 45.0 4.51e-01 81.8% 90.0%
3578306 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 40.0 4.25e-01 70.5% 81.3%
4943514 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 46.0 4.78e-01 85.2% 92.5%
5030021 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 44.0 4.77e-01 81.8% 100.0%
3986747 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.58 43.0 4.02e-01 78.4% 72.2%
3617001 2.1.1.246 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29071 0.58 44.0 4.10e-01 81.8% 85.2%
3817268 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 43.0 4.27e-01 80.7% 84.2%
3838487 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.57 44.0 4.43e-01 83.0% 94.4%
3583375 2.1.1.259 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29495 0.57 44.0 4.21e-01 100.0% 69.5%
3785824 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.57 42.0 4.39e-01 78.4% 97.5%
5004633 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 46.0 4.59e-01 100.0% 86.7%
3303516 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.57 42.0 4.19e-01 80.7% 84.2%
3716427 2.1.1.224 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29084 0.56 45.0 4.01e-01 100.0% 60.8%
3984632 2.25.1.1 ↗ beta barrels › OB-fold › OB domain in IgaA › OB domain in IgaA › IgaA 0.56 46.0 3.78e-01 87.5% 72.9%
4194546 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.56 44.0 4.45e-01 84.1% 100.0%
3633102 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.56 42.0 4.35e-01 79.5% 96.2%
3736756 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.56 42.0 4.36e-01 79.5% 98.8%
5013365 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.55 41.0 4.37e-01 79.5% 98.7%
5024136 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.55 47.0 4.13e-01 100.0% 62.2%
4353586 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 38.0 3.70e-01 71.6% 64.0%
3403141 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.55 42.0 4.48e-01 83.0% 98.7%
3783981 2.1.1.59 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ten1 0.55 49.0 4.41e-01 100.0% 78.4%
5052784 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 40.0 4.27e-01 77.3% 100.0%
4114715 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 38.0 3.61e-01 71.6% 62.9%
3311698 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 42.0 4.49e-01 83.0% 98.6%
2055510 885.1.1.0 ↗ a+b complex topology › Transcription factor NusA, N-terminal domain › Transcription factor NusA, N-terminal domain › Transcription factor NusA, N-terminal domain 0.55 39.0 3.83e-01 75.0% 75.3%
3799466 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 43.0 4.38e-01 85.2% 88.2%
5063475 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 43.0 4.33e-01 100.0% 85.6%
5063149 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 44.0 4.05e-01 100.0% 67.8%
4945258 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.54 44.0 4.46e-01 100.0% 90.0%
4100241 2.1.1.113 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CvfB_2nd 0.54 44.0 4.55e-01 92.0% 94.1%
3435395 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.54 41.0 3.19e-01 95.5% 35.6%
5061448 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 45.0 4.55e-01 98.9% 94.4%
1144506 2.2.1.0 ↗ beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins 0.53 38.0 3.77e-01 75.0% 83.0%
3938425 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 43.0 4.25e-01 97.7% 83.2%
3639760 2.1.1.52 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Stn1 0.53 46.0 3.74e-01 100.0% 66.1%
5059842 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 46.0 4.47e-01 100.0% 94.0%
2759388 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 36.0 3.95e-01 72.7% 93.0%
5059841 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 46.0 4.46e-01 100.0% 91.0%
4185603 2.1.1.63 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1_2 0.52 37.0 4.02e-01 73.9% 95.7%
3744260 2.1.1.177 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1_RRP5 0.52 44.0 4.51e-01 97.7% 98.8%
5012551 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 41.0 4.30e-01 100.0% 96.2%
3386993 2.1.1.14 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N 0.52 35.0 3.86e-01 96.6% 92.3%
3970058 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 45.0 4.29e-01 100.0% 82.9%
4319178 2.10.1.1 ↗ beta barrels › OB-fold › CheW › CheW › CheW 0.52 36.0 3.11e-01 71.6% 50.0%
3758013 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 39.0 2.74e-01 84.1% 47.0%
3538384 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 40.0 2.51e-01 86.4% 25.8%
D2 high residues 191-268
PDB
Domain cluster: rep: NC_073094.1__YP_010742931.1__QAY90_gp51__00051__D40-112
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10983.14 best DUF2793 48.6 8.20e-13 96.2% 75.9%
D3 medium residues 306-339_359-444
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4m0hA01 2.60.120.1440 Mainly Beta › Sandwich › Jelly Rolls › 0.54 39.0 3.71e-01 92.5% 64.0%
5c33A00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.53 39.0 3.40e-01 75.8% 70.0%
2wjsA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 38.0 3.41e-01 75.8% 66.3%
5xrkA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 36.0 3.42e-01 74.2% 80.1%
1yi9A02 2.60.120.230 Mainly Beta › Sandwich › Jelly Rolls › 0.50 36.0 3.44e-01 72.5% 100.0%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5023972 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 33.0 3.81e-01 74.2% 76.5%
3993033 10.1.1.8 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY 0.52 42.0 3.13e-01 90.0% 52.9%
5021913 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.51 26.0 2.91e-01 99.2% 60.0%
D4 medium residues 340-358_445-510
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6i8xA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 37.0 3.20e-01 81.2% 81.2%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4979306 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.56 31.0 3.34e-01 70.6% 62.7%