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UTU47192.1

Arc-Vir

OM716000__UTU47192.1__X__00017

Identity

Accession:
OM716000 ↗
Protein ID:
UTU47192.1 ↗
Kingdom:
archaea

Quality

73.1 mean pLDDT

Taxonomy

TaxID: 2964734

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-50
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1cqxA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.75 68.0 4.70e-01 100.0% 46.0%
3kkaD00 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.72 58.0 5.24e-01 89.8% 97.1%
2ig3A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.70 60.0 4.41e-01 95.9% 52.0%
3npiB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.69 50.0 3.29e-01 79.6% 24.3%
2e9xB02 1.20.58.1020 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 58.0 4.45e-01 100.0% 52.3%
3qkaE02 1.10.287.2460 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.63 45.0 4.74e-01 81.6% 88.4%
2cqnA00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.63 53.0 4.61e-01 98.0% 75.3%
2h9aB01 3.20.20.20 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like 0.61 44.0 2.71e-01 79.6% 12.9%
4h63H01 1.20.58.1710 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 53.0 4.64e-01 95.9% 65.3%
7kseA02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.58 49.0 3.59e-01 100.0% 65.8%
4xr9B02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 49.0 3.28e-01 100.0% 42.6%
3gaaB00 3.40.50.10900 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PAC-like subunit 0.55 44.0 2.88e-01 91.8% 43.0%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3959274 103.5.1.3 alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › IPMS_D2 0.75 54.0 4.06e-01 77.6% 40.0%
4286282 507.1.1.1 alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB 0.72 57.0 3.97e-01 87.8% 80.6%
4408869 7579.1.1.44 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_6 0.70 57.0 3.56e-01 89.8% 48.9%
3397412 190.1.1.3 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 0.70 54.0 4.62e-01 81.6% 82.7%
5040462 2004.1.1.79 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Thymidylate_kin 0.70 61.0 4.00e-01 100.0% 54.3%
3245658 102.1.1.1 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_1 0.69 60.0 5.09e-01 100.0% 97.6%
3547162 102.1.1.1 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_1 0.68 60.0 5.13e-01 100.0% 91.3%
4665790 563.1.1.1 alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP 0.66 50.0 3.36e-01 83.7% 44.1%
3174480 101.1.2.527 alpha arrays › HTH › HTH › winged helix domain › WH_RGF3 0.66 53.0 4.13e-01 91.8% 95.5%
2640871 4163.1.2.1 alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF2 C-terminal domain-like › Sld5 0.66 57.0 4.36e-01 100.0% 47.0%
4426593 563.1.1.1 alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP 0.65 46.0 3.19e-01 75.5% 24.7%
3400809 190.1.1.0 alpha arrays › HMG-box-like › HMG-box › HMG-box 0.65 45.0 3.99e-01 73.5% 66.7%
3746159 102.1.1.1 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_1 0.65 57.0 4.68e-01 100.0% 87.8%
4927955 244.3.1.1 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › NifU_N 0.63 50.0 3.87e-01 98.0% 69.6%
4015907 601.33.1.14 alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain › Erg28 0.63 51.0 4.36e-01 93.9% 73.8%
3250878 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 49.0 4.37e-01 91.8% 90.7%
3200045 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.62 53.0 4.97e-01 95.9% 85.0%
4014593 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 46.0 4.50e-01 100.0% 98.2%
3648076 2004.1.1.56 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC 0.52 40.0 2.79e-01 89.8% 26.5%
D2 high residues 61-122
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4a18X01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.70 59.0 5.47e-01 100.0% 73.4%
1vwxS02 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.68 55.0 5.26e-01 100.0% 76.3%
2b9wA03 3.30.70.1990 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 59.0 5.17e-01 100.0% 94.7%
1vwxS01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.67 57.0 5.46e-01 100.0% 83.1%
1imuA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.67 46.0 3.86e-01 72.6% 82.2%
3nycA02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.66 58.0 4.43e-01 100.0% 56.0%
4njcA00 3.10.20.730 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like 0.66 49.0 5.02e-01 100.0% 85.0%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.65 53.0 5.08e-01 100.0% 77.6%
8hw4A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 42.0 2.88e-01 71.0% 67.2%
1x9tA02 3.90.1620.10 Alpha Beta › Alpha-Beta Complex › adenovirus 2 penton base, domain 2 › adenovirus 2 penton base, domain 2 0.62 53.0 3.50e-01 98.4% 43.6%
2yt4A03 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 42.0 3.58e-01 74.2% 66.3%
2zw2A00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.59 51.0 4.65e-01 100.0% 97.6%
2ksvA00 3.10.620.30 Alpha Beta › Roll › C8orf32 fold › 0.58 49.0 3.60e-01 100.0% 42.2%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.57 48.0 4.11e-01 100.0% 56.0%
2cuwA00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.57 47.0 4.39e-01 100.0% 98.8%
1y7xA01 2.30.30.550 Mainly Beta › Roll › SH3 type barrels. › Major Vault Protein repeat 0.57 37.0 4.05e-01 100.0% 89.4%
6tqfA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 38.0 2.68e-01 71.0% 72.9%
1kf6B01 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.55 45.0 4.01e-01 100.0% 80.8%
1pnjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 46.0 4.23e-01 98.4% 89.5%
3fwlA02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.55 40.0 2.52e-01 80.6% 61.8%
1y7xA02 2.30.30.550 Mainly Beta › Roll › SH3 type barrels. › Major Vault Protein repeat 0.55 39.0 4.11e-01 100.0% 87.5%
3b49A00 3.20.80.10 Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain 0.55 43.0 3.11e-01 90.3% 52.9%
2mcfA00 3.40.50.11630 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 37.0 2.85e-01 71.0% 79.7%
2bs2B01 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.55 45.0 3.94e-01 100.0% 82.1%
2o3iA01 3.40.1610.10 Alpha Beta › 3-Layer(aba) Sandwich › CV3147-like fold › CV3147-like domain 0.54 41.0 2.89e-01 88.7% 23.3%
6jptA00 3.30.230.90 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.53 40.0 3.27e-01 82.3% 87.6%
5kfzA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.53 43.0 3.64e-01 100.0% 52.0%
1uwwB00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 43.0 3.24e-01 100.0% 59.8%
3vwaA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.51 39.0 3.06e-01 85.5% 44.1%
3qjlA02 3.30.70.1900 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 42.0 3.50e-01 100.0% 100.0%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5065436 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.72 58.0 5.83e-01 100.0% 87.5%
4939739 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.71 56.0 5.74e-01 100.0% 91.5%
4969863 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.71 55.0 5.27e-01 100.0% 72.0%
4990637 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.71 58.0 5.33e-01 100.0% 69.9%
5012895 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.71 56.0 5.80e-01 100.0% 100.0%
1442666 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.70 59.0 5.44e-01 100.0% 71.6%
5067865 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.70 56.0 5.45e-01 100.0% 80.0%
4937773 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.70 56.0 5.77e-01 100.0% 98.3%
3987406 3115.6.1.1 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › RpoY 0.69 59.0 5.60e-01 100.0% 80.0%
4128974 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.69 58.0 5.39e-01 100.0% 75.0%
4846323 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.69 48.0 4.66e-01 87.1% 65.7%
4160542 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.69 55.0 5.64e-01 100.0% 98.3%
4199730 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.69 57.0 4.90e-01 100.0% 57.1%
3551719 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.68 58.0 5.49e-01 100.0% 78.7%
4013514 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.68 55.0 4.77e-01 100.0% 55.2%
4996552 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.68 55.0 5.07e-01 100.0% 68.2%
4084879 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.68 57.0 5.24e-01 100.0% 71.8%
5024241 330.2.1.5 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 0.67 46.0 4.00e-01 72.6% 97.9%
2321315 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.66 58.0 5.02e-01 100.0% 84.8%
3216210 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.66 48.0 5.05e-01 100.0% 100.0%
3966401 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.66 58.0 4.47e-01 100.0% 59.3%
3517068 3115.1.1.6 a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494 0.63 52.0 5.16e-01 100.0% 90.8%
4350613 302.1.1.0 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain 0.62 51.0 4.29e-01 91.9% 63.8%
3700104 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.61 52.0 4.35e-01 100.0% 69.6%
3508212 3115.1.1.6 a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494 0.60 48.0 4.73e-01 100.0% 84.3%
3892842 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.60 47.0 4.74e-01 100.0% 87.7%
4109626 1119.1.1.1 a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW 0.60 46.0 3.19e-01 90.3% 76.9%
3593414 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 41.0 2.82e-01 74.2% 71.5%
4867394 3820.1.1.1 a+b complex topology › CRISPR-associated endonuclease Cas9 C-terminal domain › CRISPR-associated endonuclease Cas9 C-terminal domain › CRISPR-associated endonuclease Cas9 C-terminal domain › Cas9_PI 0.58 49.0 4.29e-01 100.0% 100.0%
4932061 4076.4.1.0 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.57 30.0 3.45e-01 85.5% 68.9%
159110 304.100.1.1 a+b two layers › Alpha-beta plaits › PurS-like › PurS-like › PurS 0.57 47.0 4.39e-01 100.0% 98.8%
3874464 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.56 47.0 3.02e-01 100.0% 17.2%
3600188 3529.1.1.0 beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.55 40.0 4.16e-01 100.0% 87.3%
5027594 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.55 47.0 3.01e-01 100.0% 22.6%
3724875 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.55 45.0 3.02e-01 100.0% 22.3%
3214850 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.55 40.0 2.53e-01 77.4% 90.0%
3714926 3529.1.1.1 beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.55 41.0 4.50e-01 85.5% 100.0%
3287138 303.1.1.1 a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › PvlArgDC 0.54 47.0 3.57e-01 100.0% 44.5%
3606398 3529.1.1.1 beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.54 43.0 4.51e-01 90.3% 96.4%
3279102 2003.1.3.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.54 45.0 2.85e-01 100.0% 29.9%
3172976 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.54 39.0 2.52e-01 77.4% 66.3%
3505724 2492.1.1.8 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › UPF0172 0.54 45.0 3.50e-01 95.2% 68.3%
3464521 264.1.1.7 beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS 0.53 43.0 3.01e-01 91.9% 94.1%
3593797 3529.1.1.0 beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.53 41.0 4.35e-01 90.3% 96.4%
3729499 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.52 44.0 3.30e-01 100.0% 45.3%
3826050 304.48.1.21 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Thg1,Thg1C 0.52 43.0 2.92e-01 98.4% 37.8%
4082091 302.1.1.0 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain 0.52 42.0 3.65e-01 100.0% 60.0%
3622254 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 41.0 3.26e-01 85.5% 89.6%
5028431 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 44.0 4.09e-01 100.0% 76.2%
4966853 375.1.1.324 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF1922 0.52 41.0 3.91e-01 95.2% 77.5%
3217018 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 40.0 3.32e-01 88.7% 73.3%
5004671 2006.1.6.12 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_2 0.51 42.0 2.70e-01 91.9% 83.7%