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OM716005.1__UNI71915.1__X__00043

Bact-Vir

OM716005.1__UNI71915.1__X__00043

Identity

Accession:
OM716005 ↗
Kingdom:
phage

Quality

91.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-94
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1k38A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.54 41.0 3.10e-01 81.9% 79.9%
2jqjA01 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.54 37.0 3.34e-01 70.2% 87.7%
1ci9A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 39.0 2.65e-01 78.7% 53.6%
1rv9A00 3.60.140.10 Alpha Beta › 4-Layer Sandwich › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases 0.52 43.0 3.35e-01 96.8% 52.9%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4968082 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.54 46.0 3.58e-01 94.7% 72.0%
3996270 109.4.1.872 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › INTS1_INTS2-bd 0.53 47.0 2.77e-01 97.9% 12.7%
3279818 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.52 37.0 3.24e-01 74.5% 68.1%
3518991 284.1.3.4 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › CCTL2_WNK 0.52 33.0 3.69e-01 81.9% 81.3%
3696767 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.52 41.0 2.72e-01 86.2% 33.3%
3945041 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.51 42.0 3.60e-01 93.6% 69.7%
2721343 304.6.1.3 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.51 43.0 3.18e-01 95.7% 81.3%
4182376 323.1.1.25 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › SIDD_N 0.51 39.0 3.25e-01 81.9% 76.5%
D2 medium residues 124-184
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07275.17 best ArdA 40.4 6.20e-10 96.7% 30.3%
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2w82A03 1.10.10.1190 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Antirestriction protein ArdA, domain 3 0.78 66.0 6.63e-01 95.1% 100.0%
1cf7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 49.0 4.58e-01 96.7% 81.7%
3x1oA00 1.20.120.1790 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.60 49.0 3.84e-01 96.7% 39.6%
3qitB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.60 43.0 2.86e-01 100.0% 17.0%
2va8A03 1.10.3380.30 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › 0.59 45.0 3.14e-01 96.7% 23.9%
1k28D02 3.55.50.20 Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › 0.58 42.0 3.78e-01 96.7% 53.4%
4yiiA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 45.0 4.37e-01 95.1% 77.8%
2zj2A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 45.0 4.18e-01 95.1% 70.2%
4ev0A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 39.0 3.74e-01 98.4% 61.0%
2gauA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 40.0 3.78e-01 100.0% 60.5%
2fnaA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 43.0 4.12e-01 96.7% 74.0%
3bwxA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 43.0 2.94e-01 96.7% 20.0%
3dv8A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 41.0 3.90e-01 100.0% 65.4%
4ad9A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 44.0 4.12e-01 98.4% 69.0%
3d0sA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 42.0 3.94e-01 100.0% 66.3%
1ussA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 45.0 4.09e-01 96.7% 67.0%
2bgcA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 44.0 3.81e-01 100.0% 55.4%
2nriB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 40.0 3.61e-01 100.0% 54.3%
2qenA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 40.0 3.91e-01 95.1% 71.4%
3f8mA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 39.0 3.88e-01 98.4% 75.4%
2xkoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 41.0 3.65e-01 100.0% 56.4%
1sd4A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 40.0 4.01e-01 95.1% 81.2%
4etsA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 40.0 3.70e-01 96.7% 62.1%
5hvqC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 42.0 3.68e-01 91.8% 60.2%
1o3sA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 37.0 3.64e-01 100.0% 69.6%
5cvrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 38.0 3.55e-01 100.0% 59.5%
7pzaA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 41.0 3.77e-01 98.4% 64.0%
1xmxA03 1.10.10.680 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Hypothetical protein VC1899 (Restriction endonuclease-like) 0.51 34.0 3.05e-01 98.4% 46.1%
3lstA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 36.0 3.30e-01 91.8% 54.7%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3942694 3489.1.1.1 a+b complex topology › ArdA › ArdA › ArdA › ArdA 0.95 88.0 6.21e-01 98.4% 37.4%
3270163 101.1.2.303 alpha arrays › HTH › HTH › winged helix domain › RPC5 0.70 49.0 4.98e-01 95.1% 75.0%
3396390 101.1.2.303 alpha arrays › HTH › HTH › winged helix domain › RPC5 0.65 47.0 4.69e-01 96.7% 73.8%
3485402 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 45.0 4.62e-01 98.4% 76.7%
5073218 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 49.0 4.38e-01 93.4% 61.1%
1841041 3853.1.1.1 a+b two layers › Oxalate Biosynthetic Component A (ObcA) insertion domains › Oxalate Biosynthetic Component A (ObcA) insertion domains › Oxalate Biosynthetic Component A (ObcA) insertion domains › ObcA_N 0.62 36.0 4.19e-01 96.7% 87.5%
4013928 2003.1.5.8 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Ubie_methyltran 0.61 50.0 3.34e-01 100.0% 86.7%
4991793 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 47.0 3.33e-01 96.7% 24.9%
337475 2003.1.5.66 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.60 50.0 3.44e-01 100.0% 95.5%
4227896 2003.1.5.66 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.60 48.0 3.25e-01 98.4% 86.5%
4946851 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 48.0 3.88e-01 96.7% 44.6%
5072071 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 44.0 4.31e-01 93.4% 74.3%
5074322 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 46.0 4.34e-01 96.7% 70.9%
3033172 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 46.0 4.30e-01 96.7% 69.6%
3620712 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.59 46.0 3.99e-01 100.0% 53.3%
4013216 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 43.0 4.34e-01 96.7% 81.7%
4936165 2003.1.5.82 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.58 49.0 3.22e-01 100.0% 79.3%
4558680 101.1.2.807 alpha arrays › HTH › HTH › winged helix domain › MC6 0.58 44.0 4.12e-01 95.1% 66.3%
3988923 101.1.2.158 alpha arrays › HTH › HTH › winged helix domain › DpnI_C 0.58 45.0 4.33e-01 96.7% 74.3%
3270162 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 45.0 4.34e-01 96.7% 77.1%
3392763 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 46.0 4.23e-01 100.0% 68.2%
3905735 101.1.2.94 alpha arrays › HTH › HTH › winged helix domain › ANAPC2 0.57 47.0 4.30e-01 96.7% 68.2%
3330039 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 48.0 4.37e-01 96.7% 77.6%
4995114 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 46.0 4.09e-01 95.1% 61.1%
5073405 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 46.0 4.11e-01 96.7% 68.4%
4560206 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.57 46.0 4.18e-01 96.7% 75.6%
3413051 101.1.2.248 alpha arrays › HTH › HTH › winged helix domain › DUF4777 0.57 42.0 4.22e-01 95.1% 80.0%
4331694 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 40.0 4.09e-01 96.7% 80.0%
3500923 101.1.2.178 alpha arrays › HTH › HTH › winged helix domain › HTH_61 0.57 44.0 4.23e-01 96.7% 76.2%
3995560 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 46.0 4.18e-01 98.4% 71.1%
3693124 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.56 41.0 3.72e-01 82.0% 56.7%
4991791 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 43.0 3.86e-01 98.4% 57.9%
4933063 101.1.2.178 alpha arrays › HTH › HTH › winged helix domain › HTH_61 0.56 45.0 4.19e-01 96.7% 69.4%
4310372 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.56 45.0 3.34e-01 96.7% 36.8%
4232234 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.56 45.0 3.30e-01 96.7% 34.2%
4988748 101.1.2.178 alpha arrays › HTH › HTH › winged helix domain › HTH_61 0.55 44.0 4.06e-01 96.7% 72.2%
3390907 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 43.0 3.99e-01 98.4% 66.7%
3972365 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 44.0 3.29e-01 96.7% 36.8%
3997738 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 37.0 3.41e-01 96.7% 51.8%
5062870 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 44.0 3.97e-01 95.1% 63.3%
4963932 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 44.0 4.09e-01 96.7% 70.6%
3831548 101.1.2.522 alpha arrays › HTH › HTH › winged helix domain › DUF7725 0.55 44.0 3.83e-01 98.4% 57.0%
3555783 101.1.2.374 alpha arrays › HTH › HTH › winged helix domain › MCM4_WHD 0.54 39.0 3.54e-01 95.1% 53.8%
5077428 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 43.0 3.92e-01 95.1% 65.6%
4988076 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 41.0 4.02e-01 96.7% 76.5%
4600309 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.54 42.0 3.76e-01 93.4% 58.0%
3891461 101.1.2.606 alpha arrays › HTH › HTH › winged helix domain › RPC5_C 0.54 45.0 4.15e-01 100.0% 96.5%
5027410 101.1.2.927 alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.54 40.0 3.57e-01 96.7% 54.7%
4946048 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 43.0 4.04e-01 96.7% 82.5%
4941477 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 43.0 3.75e-01 93.4% 61.0%
3716735 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 44.0 3.67e-01 96.7% 70.4%
5073913 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 39.0 3.86e-01 96.7% 78.5%
3615532 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 40.0 3.78e-01 98.4% 67.5%
3228605 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.53 42.0 3.16e-01 96.7% 36.2%
3704256 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 41.0 3.86e-01 100.0% 70.0%
3814573 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 40.0 3.55e-01 98.4% 54.3%
5024565 101.1.2.25 alpha arrays › HTH › HTH › winged helix domain › FUR 0.52 39.0 3.19e-01 96.7% 40.0%
3685767 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 41.0 3.65e-01 96.7% 84.0%
3595933 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 40.0 3.67e-01 93.4% 82.2%
3805792 101.1.2.137 alpha arrays › HTH › HTH › winged helix domain › OST-HTH 0.51 40.0 3.75e-01 98.4% 70.0%
3487600 101.1.2.416 alpha arrays › HTH › HTH › winged helix domain › WH_Egal 0.50 38.0 3.63e-01 98.4% 72.0%