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OM728297.1__WCS68137.1__Goe21_00270__00027

Bact-Vir

OM728297.1__WCS68137.1__Goe21_00270__00027

Identity

Accession:
OM728297 ↗
Kingdom:
phage

Quality

92.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 75-134
PDB
D2 high residues 143-210
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 53.0 5.79e-01 91.2% 85.7%
3mp6A05 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 52.0 5.40e-01 98.5% 81.0%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.71 46.0 5.31e-01 92.6% 95.7%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 49.0 4.31e-01 97.1% 51.0%
6c6sD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 50.0 5.30e-01 100.0% 96.7%
4g6iB01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.62 45.0 4.17e-01 98.5% 59.6%
4c92B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 54.0 4.70e-01 100.0% 71.4%
5zwzA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 52.0 5.18e-01 97.1% 88.6%
1i8dC02 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.60 44.0 4.09e-01 98.5% 60.2%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 47.0 4.62e-01 91.2% 77.3%
1ylnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 49.0 4.18e-01 92.6% 85.1%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 48.0 4.73e-01 91.2% 82.4%
2fvgA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.58 42.0 4.06e-01 98.5% 68.4%
3jb9F00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 48.0 4.58e-01 100.0% 79.3%
4fssB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 45.0 4.69e-01 89.7% 93.4%
7w0aA02 2.170.260.10 Mainly Beta › Beta Complex › paz domain › paz domain 0.57 51.0 4.13e-01 98.5% 84.0%
5muaB01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.57 46.0 3.79e-01 94.1% 97.1%
1m5q101 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 44.0 4.48e-01 100.0% 89.7%
4f7uG00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 46.0 4.65e-01 100.0% 95.6%
4m7dA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 44.0 4.53e-01 100.0% 95.4%
2zyzB01 3.40.1170.20 Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › tRNA intron endonuclease, N-terminal domain 0.54 38.0 3.57e-01 76.5% 70.5%
1qxmA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 46.0 3.69e-01 100.0% 96.6%
6zqqA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.53 40.0 3.10e-01 88.2% 65.2%
5upiA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.52 42.0 3.18e-01 94.1% 77.7%
1wkrA01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.51 40.0 3.17e-01 94.1% 74.7%
2ix5A02 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.50 37.0 3.27e-01 80.9% 97.2%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4116754 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.82 52.0 6.26e-01 98.5% 97.8%
4627221 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.82 53.0 5.42e-01 98.5% 69.2%
4998329 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 54.0 5.97e-01 100.0% 87.3%
4024913 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 53.0 5.46e-01 97.1% 76.9%
4945288 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 45.0 5.45e-01 88.2% 95.3%
3274551 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.73 53.0 5.18e-01 98.5% 69.3%
5002449 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 50.0 5.44e-01 100.0% 89.1%
3926207 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 52.0 5.84e-01 92.6% 98.1%
4269256 4.1.1.245 beta barrels › SH3 › SH3 › SH3 › SspH 0.71 52.0 5.47e-01 98.5% 86.7%
5038405 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 45.0 5.22e-01 98.5% 97.8%
5038074 314.1.1.6 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB 0.70 47.0 3.31e-01 100.0% 21.9%
4348606 4.1.1.440 beta barrels › SH3 › SH3 › SH3 › PF27165 0.69 52.0 5.32e-01 98.5% 84.6%
3176049 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.68 52.0 5.21e-01 98.5% 79.7%
3373583 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.66 57.0 5.65e-01 97.1% 88.6%
3370388 4.1.1.118 beta barrels › SH3 › SH3 › SH3 › SH3_15 0.66 55.0 5.61e-01 98.5% 92.3%
3401559 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.65 54.0 5.52e-01 98.5% 92.3%
3323551 4.1.1.118 beta barrels › SH3 › SH3 › SH3 › SH3_15 0.65 54.0 5.52e-01 98.5% 92.3%
3629145 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.65 54.0 5.53e-01 97.1% 92.3%
3365104 4.1.1.118 beta barrels › SH3 › SH3 › SH3 › SH3_15 0.65 53.0 5.47e-01 98.5% 92.3%
4602848 1.1.7.5 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Lum_binding 0.64 44.0 4.01e-01 98.5% 53.3%
3790978 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 54.0 5.37e-01 97.1% 87.1%
3323529 4.1.1.118 beta barrels › SH3 › SH3 › SH3 › SH3_15 0.64 53.0 5.42e-01 98.5% 92.3%
3323558 4.1.1.118 beta barrels › SH3 › SH3 › SH3 › SH3_15 0.63 52.0 5.51e-01 97.1% 98.3%
3658643 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.62 53.0 4.06e-01 97.1% 42.8%
3706087 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 44.0 4.63e-01 97.1% 85.0%
3828371 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.62 53.0 4.91e-01 100.0% 74.1%
3908017 4.1.1.253 beta barrels › SH3 › SH3 › SH3 › DUF4537 0.62 53.0 5.02e-01 98.5% 78.8%
3815495 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.62 53.0 5.31e-01 100.0% 90.0%
4026193 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 52.0 4.83e-01 92.6% 94.1%
3483919 4.1.1.383 beta barrels › SH3 › SH3 › SH3 › PF29857 0.59 54.0 4.68e-01 100.0% 78.6%
5033672 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.59 52.0 3.78e-01 100.0% 53.3%
3556321 4.1.1.118 beta barrels › SH3 › SH3 › SH3 › SH3_15 0.59 54.0 5.09e-01 98.5% 90.0%
3396951 4.1.1.330 beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O, SH3-C_UBE2O 0.58 50.0 3.14e-01 98.5% 16.5%
3480597 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 53.0 4.59e-01 98.5% 79.0%
3501574 4.1.1.118 beta barrels › SH3 › SH3 › SH3 › SH3_15 0.58 53.0 5.17e-01 98.5% 92.0%
2576226 4.34.1.1 beta barrels › SH3 › Tas1 immunity protein PA14_01130 › Tas1 immunity protein PA14_01130 › Tis1_ImmP 0.58 40.0 3.90e-01 100.0% 65.8%
3207383 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.58 49.0 3.15e-01 92.6% 23.0%
3638043 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.57 49.0 3.18e-01 92.6% 24.6%
3254408 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 49.0 5.00e-01 94.1% 96.9%
5009972 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.57 29.0 2.96e-01 98.5% 44.3%
3170649 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.57 51.0 4.71e-01 98.5% 89.4%
4193599 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 50.0 4.31e-01 98.5% 64.8%
3710893 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 51.0 4.03e-01 98.5% 59.2%
3861569 220.1.1.56 beta barrels › PH domain-like › PH domain-like › PH domain-like › ASK_PH 0.55 48.0 4.07e-01 100.0% 73.0%
3611694 219.1.1.19 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C54 0.54 48.0 3.15e-01 100.0% 25.9%
4941925 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 41.0 4.28e-01 85.3% 96.9%
4432481 4205.1.1.1 a+b two layers › SMI1/KNR4-like › SMI1/KNR4-like › SMI1/KNR4-like › Syd 0.52 44.0 3.25e-01 95.6% 35.0%
3716195 6.1.1.0 beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.51 42.0 3.40e-01 98.5% 82.7%
D3 medium residues 1-73
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3zfnA02 2.30.140.40 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Pestivirus Npro endopeptidase C53, interaction domain 0.62 40.0 4.44e-01 87.7% 84.2%
1sp4B00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.60 45.0 3.32e-01 82.2% 66.3%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 38.0 4.06e-01 78.1% 82.3%
2m2lA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 37.0 3.88e-01 72.6% 73.1%
7oc3A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 36.0 3.37e-01 79.5% 52.2%
6cnhA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 31.0 3.10e-01 75.3% 50.0%
4wnoA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 38.0 3.66e-01 79.5% 95.4%
3wasA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 39.0 2.54e-01 84.9% 28.5%
3s95A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 41.0 3.93e-01 87.7% 100.0%
2gpjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 37.0 3.44e-01 79.5% 98.0%
1ir3A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 39.0 3.67e-01 86.3% 95.8%
2eqsA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 41.0 3.87e-01 90.4% 83.1%
2z7rA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 41.0 3.96e-01 93.2% 100.0%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.50 34.0 3.50e-01 76.7% 73.6%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3938002 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.61 50.0 3.37e-01 90.4% 34.9%
3614251 206.1.1.74 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr 0.57 43.0 2.65e-01 82.2% 35.2%
4015167 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.56 43.0 2.71e-01 83.6% 45.9%
3635949 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.56 43.0 2.92e-01 84.9% 63.1%
3651137 206.1.1.74 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr 0.55 42.0 2.87e-01 83.6% 35.1%
3208529 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.54 41.0 2.59e-01 83.6% 38.8%
3705317 206.1.1.71 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Kdo 0.52 43.0 2.91e-01 97.3% 53.4%
3232944 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 40.0 2.62e-01 83.6% 28.8%
3516479 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 40.0 2.80e-01 84.9% 38.0%
3204071 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 39.0 2.49e-01 83.6% 45.3%
3734880 206.1.1.74 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr 0.52 39.0 2.46e-01 83.6% 44.6%
3209501 206.1.1.74 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr 0.51 39.0 2.54e-01 84.9% 49.5%
3601458 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.51 39.0 2.33e-01 84.9% 28.9%
3178971 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.51 39.0 2.67e-01 84.9% 66.1%
3689349 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.51 38.0 2.45e-01 84.9% 44.2%
3240250 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.50 40.0 2.67e-01 90.4% 90.3%
3887624 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.50 39.0 3.14e-01 87.7% 59.4%
3997807 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.50 41.0 3.22e-01 90.4% 60.6%