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OM728297.1__WCS68239.1__Goe21_01290__00129
Bact-VirOM728297.1__WCS68239.1__Goe21_01290__00129
Identity
- Accession:
- OM728297 ↗
- Kingdom:
- phage
Quality
93.0
mean pLDDT
Taxonomy
TaxID: 3026978
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 22-78
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ysiA01 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.66 | 39.0 | 4.64e-01 | 75.4% | 100.0% |
| 2yztA00 | 3.30.160.250 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.63 | 44.0 | 4.22e-01 | 73.7% | 68.2% |
| 4ns4A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.60 | 50.0 | 3.31e-01 | 100.0% | 83.4% |
| 4cswA02 | 3.40.366.30 | Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › 50S ribosomal protein L16 arginine hydroxylase; Chain A, Domain 2 | 0.58 | 41.0 | 3.01e-01 | 77.2% | 42.6% |
| 2i2lA01 | 2.10.70.50 | Mainly Beta › Ribbon › Complement Module; domain 1 › | 0.58 | 41.0 | 4.23e-01 | 75.4% | 100.0% |
| 5yk4A04 | 1.10.1420.10 | Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › | 0.57 | 41.0 | 3.21e-01 | 78.9% | 45.6% |
| 4bs9A01 | 3.90.930.60 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › | 0.57 | 41.0 | 3.61e-01 | 80.7% | 97.9% |
| 3a2kA03 | 3.30.465.60 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.57 | 43.0 | 3.81e-01 | 84.2% | 70.9% |
| 1itvA00 | 2.110.10.10 | Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain | 0.56 | 44.0 | 3.09e-01 | 87.7% | 61.5% |
| 5w7zA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.56 | 39.0 | 3.24e-01 | 75.4% | 96.5% |
| 3havA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.56 | 47.0 | 4.11e-01 | 96.5% | 97.8% |
| 3kd6A00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.56 | 48.0 | 3.06e-01 | 98.2% | 89.7% |
| 7o06C01 | 3.30.1470.10 | Alpha Beta › 2-Layer Sandwich › Photosystem 1 Reaction Centre Subunit Ii; Chain: D; › Photosystem I PsaD, reaction center subunit II | 0.56 | 45.0 | 3.83e-01 | 87.7% | 84.6% |
| 6nyoA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.55 | 43.0 | 3.14e-01 | 91.2% | 62.8% |
| 3pfsB00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 36.0 | 2.93e-01 | 70.2% | 87.7% |
| 4zgfA00 | 2.40.128.270 | Mainly Beta › Beta Barrel › Lipocalin › | 0.54 | 41.0 | 3.21e-01 | 86.0% | 95.0% |
| 2q0lA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.54 | 44.0 | 3.24e-01 | 100.0% | 97.3% |
| 4tr6A01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.53 | 41.0 | 3.01e-01 | 87.7% | 97.2% |
| 6qp9B01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.53 | 43.0 | 2.62e-01 | 100.0% | 19.5% |
| 2jrbA00 | 3.30.250.20 | Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › L1 transposable element, C-terminal domain | 0.53 | 41.0 | 4.03e-01 | 91.2% | 81.5% |
| 2kfpA00 | 3.90.1150.30 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.53 | 41.0 | 3.40e-01 | 96.5% | 92.0% |
| 3jtzA00 | 3.30.160.390 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain | 0.52 | 44.0 | 4.06e-01 | 100.0% | 74.0% |
| 2greA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.52 | 41.0 | 2.87e-01 | 94.7% | 35.6% |
| 4fk1A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.52 | 44.0 | 3.17e-01 | 100.0% | 96.3% |
| 1v5rA00 | 3.30.920.20 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Gas2-like domain | 0.52 | 40.0 | 3.63e-01 | 100.0% | 78.4% |
| 1k8kD02 | 3.30.1460.20 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.52 | 39.0 | 3.14e-01 | 87.7% | 87.0% |
| 3au4A04 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 38.0 | 3.36e-01 | 86.0% | 67.7% |
| 1xeaA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.50 | 38.0 | 2.76e-01 | 87.7% | 57.3% |
| 5d1pA01 | 3.10.450.740 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 42.0 | 4.04e-01 | 100.0% | 100.0% |
| 2e8eA00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.50 | 42.0 | 3.34e-01 | 100.0% | 67.4% |
| 3vz9B00 | 3.30.457.50 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Chromosome segregation protein Spc25 | 0.50 | 39.0 | 3.39e-01 | 93.0% | 89.3% |
ECOD (55)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3996644 | 330.1.1.24 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Paxt-1_C | 0.67 | 48.0 | 4.01e-01 | 75.4% | 61.0% |
| 5011977 | 2006.1.2.9 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases › PF27767 | 0.66 | 51.0 | 3.71e-01 | 87.7% | 37.1% |
| 3931157 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.65 | 45.0 | 4.33e-01 | 71.9% | 96.9% |
| 3839435 | 330.9.1.0 ↗ | a+b two layers › dsRBD-like › C-terminal domain in LINE-1 ORF1p › C-terminal domain in LINE-1 ORF1p | 0.65 | 52.0 | 4.88e-01 | 93.0% | 72.0% |
| 5015183 | 7528.1.1.0 ↗ | a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains | 0.65 | 51.0 | 4.28e-01 | 93.0% | 79.1% |
| 4944829 | 4100.1.1.0 ↗ | a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like | 0.64 | 44.0 | 4.74e-01 | 71.9% | 97.8% |
| 3801175 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.62 | 44.0 | 3.69e-01 | 73.7% | 60.0% |
| 3618369 | 330.1.1.24 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Paxt-1_C | 0.62 | 43.0 | 3.64e-01 | 73.7% | 60.0% |
| 5069317 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.61 | 46.0 | 2.82e-01 | 86.0% | 20.0% |
| 3953524 | 378.1.1.23 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DUF222 | 0.60 | 48.0 | 3.63e-01 | 93.0% | 57.4% |
| 4950216 | 4100.1.1.3 ↗ | a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox | 0.60 | 41.0 | 4.31e-01 | 73.7% | 91.7% |
| 3616382 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.60 | 43.0 | 4.34e-01 | 82.5% | 95.0% |
| 4959079 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.59 | 45.0 | 2.63e-01 | 86.0% | 13.1% |
| 3906179 | 4099.1.1.9 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med27 | 0.58 | 46.0 | 3.55e-01 | 94.7% | 74.2% |
| 3551905 | 5086.1.1.143 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › Med27 | 0.58 | 47.0 | 3.54e-01 | 94.7% | 74.2% |
| 3479064 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.58 | 47.0 | 3.88e-01 | 96.5% | 95.7% |
| 3712011 | 216.1.1.1 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con | 0.58 | 45.0 | 3.45e-01 | 98.2% | 90.0% |
| 4965319 | 241.11.1.3 ↗ | a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › Luciferase | 0.57 | 43.0 | 3.47e-01 | 87.7% | 71.1% |
| 4985176 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.57 | 35.0 | 2.91e-01 | 73.7% | 31.8% |
| 3388785 | 109.1.1.11 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › Arc1p_N_like | 0.57 | 43.0 | 3.26e-01 | 93.0% | 30.3% |
| 3458862 | 331.4.1.2 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF | 0.56 | 44.0 | 3.45e-01 | 89.5% | 52.6% |
| 3645374 | 64.1.1.8 ↗ | beta meanders › WW domain-like › WW domain › WW domain › DUF7028 | 0.56 | 43.0 | 4.05e-01 | 86.0% | 68.6% |
| 4819450 | 110.1.1.5 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › CENP-N | 0.56 | 42.0 | 3.31e-01 | 86.0% | 49.6% |
| 3714006 | 10.1.1.56 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › TS_C | 0.56 | 46.0 | 3.07e-01 | 94.7% | 47.3% |
| 3953675 | 330.7.1.0 ↗ | a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain | 0.56 | 45.0 | 4.39e-01 | 96.5% | 96.9% |
| 3474420 | 220.1.1.123 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SSH1-like_1st | 0.56 | 46.0 | 3.49e-01 | 96.5% | 78.7% |
| 4629529 | 2002.1.1.420 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI, PF25918 | 0.56 | 39.0 | 2.37e-01 | 78.9% | 10.2% |
| 5045830 | 243.6.1.9 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 | 0.56 | 45.0 | 4.32e-01 | 100.0% | 92.9% |
| 1290334 | 101.1.2.179 ↗ | alpha arrays › HTH › HTH › winged helix domain › ROXA-like_wH | 0.55 | 39.0 | 3.42e-01 | 78.9% | 73.5% |
| 3962428 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.54 | 40.0 | 2.72e-01 | 84.2% | 74.6% |
| 3900771 | 330.9.1.0 ↗ | a+b two layers › dsRBD-like › C-terminal domain in LINE-1 ORF1p › C-terminal domain in LINE-1 ORF1p | 0.54 | 40.0 | 4.05e-01 | 91.2% | 81.7% |
| 4384965 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.54 | 43.0 | 3.99e-01 | 94.7% | 78.8% |
| 3903430 | 220.1.1.123 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SSH1-like_1st | 0.54 | 37.0 | 3.30e-01 | 73.7% | 63.5% |
| 3277795 | 241.11.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › YjbR | 0.53 | 40.0 | 3.25e-01 | 89.5% | 88.9% |
| 184277 | 206.1.1.11 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH | 0.53 | 43.0 | 2.80e-01 | 94.7% | 29.1% |
| 3997581 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.53 | 44.0 | 2.74e-01 | 96.5% | 29.4% |
| 4125300 | 3018.1.1.0 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like | 0.53 | 40.0 | 3.59e-01 | 87.7% | 70.0% |
| 3475647 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.52 | 41.0 | 2.78e-01 | 91.2% | 43.2% |
| 3324335 | 881.1.1.1 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP | 0.52 | 42.0 | 3.19e-01 | 100.0% | 41.8% |
| 4976589 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.52 | 40.0 | 3.48e-01 | 86.0% | 65.3% |
| 3811166 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.52 | 41.0 | 2.74e-01 | 94.7% | 27.1% |
| 3282007 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.52 | 36.0 | 3.54e-01 | 75.4% | 84.6% |
| 9522 | 2003.6.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB | 0.52 | 40.0 | 2.67e-01 | 96.5% | 85.3% |
| 3255991 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.52 | 37.0 | 2.43e-01 | 78.9% | 21.0% |
| 3213990 | 2.18.1.0 ↗ | beta barrels › OB-fold › OB domain in putative lipoprotein BF3042-related proteins › OB domain in putative lipoprotein BF3042-related proteins | 0.52 | 34.0 | 3.29e-01 | 70.2% | 80.0% |
| 4159154 | 3018.1.1.0 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like | 0.52 | 39.0 | 3.54e-01 | 86.0% | 69.4% |
| 3990829 | 59.1.1.2 ↗ | beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › RNA_pol_Rpc4 | 0.52 | 42.0 | 3.39e-01 | 93.0% | 94.9% |
| 3394463 | 2004.1.1.230 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Tsr1_G-like | 0.51 | 41.0 | 3.08e-01 | 100.0% | 85.6% |
| 4316271 | 3018.1.1.0 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like | 0.51 | 41.0 | 3.76e-01 | 91.2% | 73.8% |
| 3622711 | 5.1.5.76 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, Beta-prop_NOL10_N | 0.51 | 39.0 | 2.54e-01 | 89.5% | 22.2% |
| 5079418 | 5050.1.1.10 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_2 | 0.51 | 39.0 | 2.78e-01 | 91.2% | 47.0% |
| 2842269 | 2008.1.1.3 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc | 0.50 | 40.0 | 3.28e-01 | 98.2% | 97.7% |
| 3276724 | 59.1.1.8 ↗ | beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › TFIIF_beta_N | 0.50 | 37.0 | 3.25e-01 | 84.2% | 89.5% |
| 4052917 | 2003.6.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB | 0.50 | 38.0 | 2.48e-01 | 87.7% | 45.9% |
| 4055950 | 3018.1.1.0 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like | 0.50 | 38.0 | 3.62e-01 | 87.7% | 84.3% |